# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_22 - 341 cobW PF02492.14 178 0.00027 13.5 0.0 1 1 6.8e-06 0.00076 12.0 0.0 3 29 155 180 153 197 0.71 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_37 - 239 Seryl_tRNA_N PF02403.17 108 5.2e-06 19.5 0.8 1 2 4.7e-08 5.2e-06 19.5 0.8 24 89 30 94 27 103 0.92 # 29670 # 30386 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 1_37 - 239 Seryl_tRNA_N PF02403.17 108 5.2e-06 19.5 0.8 2 2 0.0051 0.56 3.4 2.4 40 89 154 202 120 219 0.69 # 29670 # 30386 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.526 3_4 - 260 IstB_IS21 PF01695.12 178 9.5e-66 213.6 0.0 1 1 2.2e-67 2.4e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 228 MipZ PF09140.6 261 2.1e-08 26.6 0.4 1 2 0.00026 0.015 7.4 0.0 2 22 12 32 11 36 0.92 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_13 - 228 MipZ PF09140.6 261 2.1e-08 26.6 0.4 2 2 2.1e-07 1.2e-05 17.6 0.1 85 140 74 127 48 165 0.81 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_39 - 228 MipZ PF09140.6 261 4.8e-08 25.4 5.4 1 2 0.00056 0.031 6.3 0.5 6 23 19 36 14 59 0.83 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_39 - 228 MipZ PF09140.6 261 4.8e-08 25.4 5.4 2 2 1.1e-08 6.4e-07 21.7 0.5 83 150 71 138 45 166 0.83 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 154 SSB PF00436.20 104 1.7e-44 143.0 0.8 1 1 1.8e-46 2e-44 142.8 0.8 1 103 6 112 6 113 0.97 # 1141 # 1602 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 2_18 - 689 DUF87 PF01935.12 229 3.7e-27 88.6 0.0 1 2 4e-25 1.5e-23 76.9 0.0 8 153 160 306 153 387 0.84 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_18 - 689 DUF87 PF01935.12 229 3.7e-27 88.6 0.0 2 2 0.00045 0.017 8.0 0.1 189 229 467 507 418 507 0.78 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_23 - 636 DUF87 PF01935.12 229 4.3e-06 19.7 0.0 1 1 2.1e-07 7.6e-06 18.9 0.0 8 63 174 228 169 273 0.86 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_30 - 350 DUF87 PF01935.12 229 0.00026 13.9 0.0 1 1 1.2e-05 0.00043 13.2 0.0 28 47 173 192 152 201 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 AAA_22 PF13401.1 131 1.4e-06 21.6 0.0 1 2 1.7e-05 0.00046 13.4 0.1 4 28 101 125 98 148 0.75 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_22 PF13401.1 131 1.4e-06 21.6 0.0 2 2 0.0033 0.091 6.0 0.0 77 101 151 178 124 201 0.64 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 AAA_22 PF13401.1 131 3e-05 17.3 0.0 1 1 2.1e-06 5.7e-05 16.3 0.0 3 30 167 194 165 249 0.76 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 AAA_22 PF13401.1 131 5.6e-05 16.4 0.0 1 1 4.6e-06 0.00013 15.2 0.0 2 67 150 228 148 259 0.68 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_18 - 689 AAA_22 PF13401.1 131 0.00018 14.7 0.0 1 1 6.3e-05 0.0017 11.5 0.0 5 41 176 215 174 253 0.78 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 350 ATP_bind_1 PF03029.12 238 0.00023 13.8 0.0 1 1 3.1e-06 0.00035 13.2 0.0 1 23 173 195 173 202 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 KAP_NTPase PF07693.9 325 7.6e-05 14.8 0.0 1 1 1.6e-06 0.00018 13.6 0.0 18 53 150 183 135 225 0.78 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 AAA_17 PF13207.1 121 1.9e-05 18.5 0.0 1 1 6.9e-07 3.8e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 AAA_17 PF13207.1 121 0.00043 14.2 0.0 1 1 1.3e-05 0.00072 13.4 0.0 2 26 104 131 103 216 0.74 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 MobB PF03205.9 140 7.1e-05 15.6 0.0 1 1 1.3e-06 0.00014 14.6 0.0 2 27 170 194 169 206 0.81 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 PhoH PF02562.11 205 3.5e-07 22.7 0.1 1 1 5e-09 5.5e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AFG1_ATPase PF03969.11 362 0.00034 12.5 0.0 1 1 5.8e-06 0.00065 11.6 0.0 64 214 103 251 81 258 0.78 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 T2SE PF00437.15 272 2e-49 160.9 0.0 1 1 7e-51 2.6e-49 160.5 0.0 7 267 26 318 21 322 0.93 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 T2SE PF00437.15 272 9.4e-48 155.4 0.0 1 1 2.9e-49 1.1e-47 155.2 0.0 7 270 31 302 25 304 0.94 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 917 T2SE PF00437.15 272 0.00031 12.7 0.0 1 1 1.6e-05 0.00059 11.8 0.0 114 155 512 562 379 565 0.67 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_22 - 341 Zeta_toxin PF06414.7 201 0.00025 13.2 0.0 1 1 1.1e-05 0.00063 11.9 0.0 14 43 150 179 139 230 0.82 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 350 Zeta_toxin PF06414.7 201 0.0011 11.2 0.0 1 1 4.4e-05 0.0024 10.0 0.0 17 48 169 201 160 224 0.79 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_13 - 228 VirC1 PF07015.6 231 4.1e-05 15.8 0.0 1 1 4.8e-07 5.4e-05 15.4 0.0 9 218 18 226 11 227 0.76 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 341 Arch_ATPase PF01637.13 234 8e-05 15.4 0.0 1 1 1.4e-06 0.00015 14.5 0.0 6 50 140 181 139 227 0.76 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 AAA_16 PF13191.1 185 2.5e-06 20.6 0.0 1 1 1.7e-07 4.6e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 917 AAA_16 PF13191.1 185 1e-05 18.6 0.0 1 1 3.1e-06 8.6e-05 15.6 0.0 19 166 530 769 520 785 0.60 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 3_4 - 260 AAA_16 PF13191.1 185 1.6e-05 18.0 2.4 1 1 4.8e-06 0.00013 15.0 0.1 23 51 100 128 86 149 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 AAA_16 PF13191.1 185 0.00053 13.0 0.0 1 1 3.1e-05 0.00085 12.4 0.0 25 51 169 195 164 261 0.86 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 AAA_23 PF13476.1 202 2.8e-06 20.8 0.0 1 2 0.066 3.7 0.8 0.0 70 133 34 92 5 110 0.78 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 AAA_23 PF13476.1 202 2.8e-06 20.8 0.0 2 2 5.3e-07 3e-05 17.5 0.0 19 39 152 172 142 174 0.91 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_38 - 917 AAA_23 PF13476.1 202 0.00038 13.9 0.0 1 1 1.4e-05 0.00078 12.8 0.0 18 78 534 593 519 647 0.65 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_22 - 341 AAA_18 PF13238.1 129 8.8e-05 15.9 0.0 1 1 2e-06 0.00022 14.6 0.0 2 23 156 179 156 225 0.76 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_13 - 228 CbiA PF01656.18 195 1e-11 37.6 0.4 1 1 2.7e-12 1e-10 34.4 0.4 1 193 13 187 13 189 0.76 # 11666 # 12349 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_39 - 228 CbiA PF01656.18 195 6.7e-05 15.4 3.0 1 1 4.2e-06 0.00015 14.2 3.0 3 174 18 168 16 186 0.67 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 3_4 - 260 CbiA PF01656.18 195 0.0011 11.5 0.0 1 1 3.8e-05 0.0014 11.1 0.0 3 42 105 145 104 254 0.75 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 KaiC PF06745.8 227 0.00041 12.5 0.0 1 2 0.07 7.8 -1.5 0.0 137 180 23 63 15 80 0.72 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 KaiC PF06745.8 227 0.00041 12.5 0.0 2 2 1.3e-05 0.0014 10.8 0.0 16 81 149 210 138 253 0.72 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 AAA_14 PF13173.1 128 3.9e-07 23.1 0.0 1 2 1.7e-08 1.9e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_14 PF13173.1 128 3.9e-07 23.1 0.0 2 2 0.048 5.3 0.0 0.0 14 46 215 247 212 257 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 917 AAA_29 PF13555.1 62 1.7e-05 17.4 0.0 1 1 1.2e-06 4.4e-05 16.1 0.0 18 47 531 559 516 574 0.77 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_22 - 341 AAA_29 PF13555.1 62 0.00036 13.1 0.0 1 1 2.6e-05 0.00098 11.7 0.0 21 40 150 169 144 170 0.82 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 350 AAA_29 PF13555.1 62 0.00038 13.1 0.0 1 1 2.3e-05 0.00085 12.0 0.0 23 40 168 185 160 191 0.85 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 AAA PF00004.24 132 2.4e-08 27.3 0.0 1 1 4.1e-10 4.5e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 Bac_DnaA PF00308.13 219 5.7e-09 28.9 0.0 1 1 7.8e-11 8.6e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 DUF258 PF03193.11 161 0.00023 13.4 0.0 1 1 7.3e-06 0.00041 12.6 0.0 26 59 92 125 80 153 0.82 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 DUF258 PF03193.11 161 0.00065 12.0 0.0 1 1 2.1e-05 0.0011 11.2 0.0 22 69 138 186 123 196 0.81 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_23 - 636 TraG-D_C PF12696.2 128 6.5e-10 32.0 0.0 1 1 1.8e-11 1e-09 31.4 0.0 7 94 406 496 400 527 0.77 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_38 - 917 TraG-D_C PF12696.2 128 0.0002 14.3 0.1 1 1 7.3e-06 0.0004 13.3 0.1 1 72 753 825 753 831 0.83 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 3_4 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 1 2 0.0015 0.17 4.6 0.1 2 30 104 132 103 143 0.82 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 2 2 0.0003 0.033 6.9 0.0 87 108 155 176 141 202 0.77 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_18 - 689 FtsK_SpoIIIE PF01580.13 205 6.8e-07 22.0 0.0 1 1 1.9e-07 7.1e-06 18.6 0.0 29 80 164 221 140 232 0.72 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 350 FtsK_SpoIIIE PF01580.13 205 0.00081 11.9 0.0 1 1 3.3e-05 0.0012 11.4 0.0 41 59 171 189 158 224 0.87 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 917 FtsK_SpoIIIE PF01580.13 205 0.00097 11.7 0.0 1 1 5.8e-05 0.0021 10.6 0.0 15 56 505 553 495 563 0.68 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 1_30 - 350 ABC_tran PF00005.22 137 1.9e-06 21.3 0.0 1 1 1.3e-07 3.5e-06 20.4 0.0 7 45 164 202 161 219 0.82 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 917 ABC_tran PF00005.22 137 5.8e-05 16.5 0.0 1 1 5.1e-06 0.00014 15.2 0.0 13 37 537 561 528 569 0.86 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_22 - 341 ABC_tran PF00005.22 137 0.00012 15.5 0.0 1 1 9.1e-06 0.00025 14.4 0.0 8 49 149 190 146 211 0.82 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 ABC_tran PF00005.22 137 0.00058 13.2 0.2 1 1 8.1e-05 0.0022 11.3 0.1 8 31 98 121 95 132 0.86 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_19 PF13245.1 76 0.00075 12.3 0.2 1 1 2.6e-05 0.0029 10.5 0.0 11 35 103 126 95 157 0.81 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 917 AAA_10 PF12846.2 304 1.4e-42 139.1 0.1 1 1 2.9e-43 5.4e-42 137.2 0.0 2 298 536 830 535 836 0.91 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 2_14 - 851 AAA_10 PF12846.2 304 9.4e-34 110.2 0.0 1 1 9.4e-35 1.7e-33 109.3 0.0 7 303 471 761 466 762 0.91 # 8629 # 11181 # -1 # ID=2_14;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 2_18 - 689 AAA_10 PF12846.2 304 2.2e-19 63.0 0.0 1 1 7.8e-20 1.4e-18 60.3 0.0 2 297 176 606 175 611 0.78 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_23 - 636 AAA_10 PF12846.2 304 2.3e-10 33.4 0.0 1 1 1.8e-09 3.3e-08 26.3 0.0 4 299 192 481 189 483 0.72 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 3_4 - 260 AAA_10 PF12846.2 304 4.1e-05 16.1 0.2 1 2 0.086 1.6 1.1 0.0 106 155 28 69 4 89 0.61 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_10 PF12846.2 304 4.1e-05 16.1 0.2 2 2 2.6e-05 0.00049 12.6 0.1 3 35 103 135 101 172 0.84 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 AAA_10 PF12846.2 304 6.1e-05 15.6 0.0 1 1 5.2e-06 9.6e-05 14.9 0.0 4 23 171 190 168 212 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_30 - 350 DEAD PF00270.24 169 0.0013 11.2 0.0 1 1 2.1e-05 0.0023 10.5 0.0 14 33 168 187 156 241 0.83 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_23 - 636 TrwB_AAD_bind PF10412.4 386 5.1e-10 31.5 0.0 1 2 7.1e-06 0.0002 13.1 0.0 11 53 185 227 180 240 0.88 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_23 - 636 TrwB_AAD_bind PF10412.4 386 5.1e-10 31.5 0.0 2 2 7.3e-07 2e-05 16.3 0.0 263 373 418 533 302 541 0.82 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 2_18 - 689 TrwB_AAD_bind PF10412.4 386 1.3e-08 26.8 0.0 1 2 1.7e-07 4.8e-06 18.4 0.0 10 58 170 226 162 232 0.88 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_18 - 689 TrwB_AAD_bind PF10412.4 386 1.3e-08 26.8 0.0 2 2 0.00099 0.028 6.0 0.0 261 321 555 607 552 619 0.85 # 16360 # 18426 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 350 TrwB_AAD_bind PF10412.4 386 0.00072 11.2 0.0 1 1 3.4e-05 0.00095 10.8 0.0 17 43 170 196 153 224 0.79 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_38 - 917 TrwB_AAD_bind PF10412.4 386 0.00075 11.2 0.0 1 1 0.00011 0.0031 9.2 0.0 15 37 535 557 525 585 0.75 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 3_4 - 260 Sigma54_activ_2 PF14532.1 138 0.00044 13.4 0.0 1 1 6.3e-06 0.0007 12.7 0.0 9 64 87 144 84 229 0.70 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_23 - 636 T4SS-DNA_transf PF02534.9 469 7.9e-08 24.3 0.0 1 2 1.5e-05 0.0016 10.0 0.0 44 84 181 231 128 272 0.76 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_23 - 636 T4SS-DNA_transf PF02534.9 469 7.9e-08 24.3 0.0 2 2 4e-06 0.00045 11.9 0.0 252 400 350 498 337 512 0.75 # 17676 # 19583 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.532 1_30 - 350 Pox_A32 PF04665.7 241 6.4e-06 18.6 0.1 1 1 8.5e-08 9.5e-06 18.1 0.1 16 61 171 221 161 236 0.81 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_30 - 350 RNA_helicase PF00910.17 107 0.00033 13.9 0.0 1 1 4.9e-06 0.00055 13.2 0.0 2 36 172 211 171 233 0.78 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_22 - 341 Herpes_ori_bp PF02399.10 824 0.0013 9.7 0.0 1 1 1.8e-05 0.002 9.1 0.0 47 78 150 180 137 184 0.85 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_22 - 341 UPF0079 PF02367.12 123 3.2e-06 19.9 0.0 1 1 4.9e-08 5.4e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 2_39 - 228 AAA_24 PF13479.1 213 0.00026 13.6 0.3 1 1 8.2e-06 0.00046 12.9 0.1 5 76 12 94 8 107 0.83 # 32338 # 33021 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 3_4 - 260 AAA_24 PF13479.1 213 0.0015 11.2 0.1 1 1 6.1e-05 0.0034 10.0 0.1 5 23 103 121 99 127 0.85 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_30 - 350 NACHT PF05729.7 166 8.8e-05 15.2 0.0 1 1 5.7e-06 0.00021 14.0 0.0 2 22 170 190 169 195 0.89 # 24321 # 25370 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_4 - 260 NACHT PF05729.7 166 0.00014 14.6 0.0 1 1 6.2e-06 0.00023 13.9 0.0 3 49 104 151 102 200 0.81 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_22 - 341 NACHT PF05729.7 166 0.00096 11.9 0.0 1 1 5.5e-05 0.002 10.8 0.0 3 28 155 180 153 233 0.64 # 19996 # 21018 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 260 AAA_25 PF13481.1 194 8e-07 21.7 0.1 1 1 2.2e-08 2.5e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_13 - 271 IPT PF01745.11 233 0.0054 8.9 5.0 1 2 0.019 2.1 0.5 0.1 125 173 41 90 28 99 0.75 # 7820 # 8632 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.408 2_13 - 271 IPT PF01745.11 233 0.0054 8.9 5.0 2 2 3.8e-05 0.0043 9.3 1.8 134 214 168 250 157 264 0.88 # 7820 # 8632 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.408 3_4 - 260 AAA_28 PF13521.1 163 0.00028 13.9 0.0 1 1 5e-06 0.00055 13.0 0.0 1 49 103 156 103 171 0.73 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_4 - 260 AAA_5 PF07728.9 139 2e-05 17.4 0.0 1 1 9.1e-07 5.1e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 5337 # 6116 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_38 - 917 AAA_5 PF07728.9 139 0.00041 13.2 0.0 1 1 1.7e-05 0.00097 11.9 0.0 2 25 538 561 537 579 0.84 # 30405 # 33155 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.578 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8649d9f9-27d3-4abe-8195-96a97bdc362f # Target file: checkm_output/bins/pm1173/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1173/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8649d9f9-27d3-4abe-8195-96a97bdc362f checkm_output/bins/pm1173/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:05 2020 # [ok]