# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 288 DUF1776 PF08643.5 299 8.1e-07 20.3 0.0 1 1 2.2e-08 1.1e-06 19.9 0.0 105 197 94 183 43 200 0.92 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 288 adh_short PF00106.20 167 9.8e-34 108.6 0.3 1 2 8.5e-35 4.2e-33 106.5 0.1 3 165 11 171 9 173 0.93 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 288 adh_short PF00106.20 167 9.8e-34 108.6 0.3 2 2 0.047 2.3 -0.0 0.0 66 110 227 274 205 279 0.66 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_5 - 129 Ribosomal_S20p PF01649.13 84 0.00014 14.2 0.1 1 1 4.8e-06 0.00024 13.4 0.1 6 59 56 109 53 118 0.75 # 3865 # 4251 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_20 - 288 KR PF08659.5 181 2.7e-13 41.9 0.1 1 1 1.2e-14 6.1e-13 40.7 0.1 4 167 12 172 10 185 0.86 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 288 RmlD_sub_bind PF04321.12 287 0.00038 11.3 0.0 1 1 1.4e-05 0.00068 10.5 0.0 3 69 11 100 8 123 0.84 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 288 NAD_binding_10 PF13460.1 183 8.8e-06 17.7 0.0 1 1 3.4e-07 1.7e-05 16.8 0.0 3 145 13 186 12 213 0.71 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_20 - 288 adh_short_C2 PF13561.1 241 1.8e-19 62.4 0.0 1 1 4.6e-21 2.3e-19 62.0 0.0 5 182 17 188 15 220 0.90 # 18563 # 19426 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6e2baf53-06e3-4f15-8a3c-7971d4a31906 # Target file: checkm_output/bins/pm1168/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1168/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6e2baf53-06e3-4f15-8a3c-7971d4a31906 checkm_output/bins/pm1168/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:00 2020 # [ok]