# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_75 - 225 Eno-Rase_NADH_b PF12242.3 78 3.9e-05 16.6 2.1 1 2 1.3e-06 0.00015 14.7 1.0 40 73 4 36 2 41 0.84 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_75 - 225 Eno-Rase_NADH_b PF12242.3 78 3.9e-05 16.6 2.1 2 2 0.042 5.1 0.2 0.0 3 25 43 64 41 79 0.80 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_43 - 399 MipZ PF09140.6 261 2.3e-06 20.0 0.2 1 2 4.5e-05 0.0055 8.9 0.0 2 53 110 166 109 190 0.73 # 42917 # 44113 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_43 - 399 MipZ PF09140.6 261 2.3e-06 20.0 0.2 2 2 4.6e-05 0.0055 8.9 0.0 90 135 236 281 222 287 0.88 # 42917 # 44113 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_62 - 257 AAA_22 PF13401.1 131 2.1e-05 17.8 0.1 1 1 6.6e-07 8e-05 16.0 0.0 5 64 65 125 61 163 0.72 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_65 - 140 tRNA_anti-like PF12869.2 144 7.4e-07 21.9 0.0 1 1 7.1e-08 4.3e-06 19.5 0.0 32 134 39 129 4 138 0.77 # 77926 # 78345 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_99 - 52 tRNA_anti-like PF12869.2 144 0.00011 14.9 0.5 1 1 1.8e-06 0.00011 14.9 0.5 5 41 3 41 1 47 0.80 # 108709 # 108864 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.321 1_62 - 257 KAP_NTPase PF07693.9 325 0.001 11.3 0.0 1 1 1.4e-05 0.0017 10.5 0.0 18 81 62 124 50 135 0.85 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_83 - 253 AAA_15 PF13175.1 415 0.00062 12.0 0.3 1 2 0.00064 0.078 5.1 0.0 27 42 33 48 13 90 0.83 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_83 - 253 AAA_15 PF13175.1 415 0.00062 12.0 0.3 2 2 0.00066 0.08 5.0 0.2 373 397 160 184 151 191 0.92 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_62 - 257 AAA_17 PF13207.1 121 0.0011 13.0 0.0 1 1 2.7e-05 0.0033 11.5 0.0 3 33 68 103 67 149 0.69 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_83 - 253 AAA_21 PF13304.1 303 6.4e-16 52.3 0.1 1 2 7.6e-10 9.1e-08 25.5 0.1 4 25 33 56 31 75 0.74 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_83 - 253 AAA_21 PF13304.1 303 6.4e-16 52.3 0.1 2 2 1.2e-09 1.4e-07 24.9 0.0 220 285 122 184 84 216 0.76 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_20 - 140 NAD_synthase PF02540.12 242 0.00049 12.2 0.0 1 1 6.1e-06 0.00073 11.6 0.0 40 103 7 72 3 78 0.83 # 13465 # 13884 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_74 - 187 Shikimate_DH PF01488.15 135 0.00027 14.2 0.0 1 1 4.1e-06 0.00049 13.4 0.0 11 39 141 169 129 170 0.86 # 85360 # 85920 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_83 - 253 SMC_N PF02463.14 220 4.5e-06 19.2 0.1 1 1 3e-07 3.6e-05 16.2 0.1 28 186 32 184 15 201 0.69 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_43 - 399 Fer4_NifH PF00142.13 273 0.0011 11.3 0.0 1 1 1.7e-05 0.002 10.4 0.0 8 74 117 188 110 197 0.77 # 42917 # 44113 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_62 - 257 AAA_16 PF13191.1 185 1.5e-06 21.5 0.2 1 1 1.2e-07 7.5e-06 19.2 0.1 5 59 48 101 44 148 0.74 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_83 - 253 AAA_16 PF13191.1 185 3.4e-05 17.1 1.3 1 1 1.6e-06 9.7e-05 15.6 1.3 24 79 28 75 15 207 0.76 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_83 - 253 AAA_23 PF13476.1 202 0.0013 12.2 0.1 1 1 1.9e-05 0.0022 11.5 0.1 25 37 34 46 29 51 0.88 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_75 - 225 adh_short PF00106.20 167 2.4e-20 66.3 2.5 1 1 3.5e-22 4.2e-20 65.5 2.5 3 163 6 160 4 164 0.87 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_43 - 399 CbiA PF01656.18 195 6.1e-21 67.9 0.0 1 1 1.1e-22 1.3e-20 66.8 0.0 1 143 111 293 111 324 0.74 # 42917 # 44113 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_62 - 257 AAA_14 PF13173.1 128 0.00075 12.6 0.0 1 1 1.1e-05 0.0014 11.8 0.0 3 74 65 152 63 214 0.65 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_83 - 253 AAA_29 PF13555.1 62 5.2e-05 16.0 0.1 1 1 8.4e-07 0.0001 15.0 0.1 22 40 27 45 16 54 0.82 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_62 - 257 AAA PF00004.24 132 5.4e-08 26.3 0.0 1 1 1.1e-09 1.3e-07 25.0 0.0 2 124 68 211 67 219 0.80 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 225 KR PF08659.5 181 2.2e-05 17.4 3.6 1 1 6e-07 7.3e-05 15.7 3.6 4 162 7 158 5 167 0.84 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_46 - 441 Pyr_redox_3 PF13738.1 203 1.5e-19 64.0 0.0 1 2 1.6e-18 2e-16 53.8 0.0 73 201 87 218 55 220 0.82 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_46 - 441 Pyr_redox_3 PF13738.1 203 1.5e-19 64.0 0.0 2 2 0.00015 0.018 8.3 0.0 99 144 289 337 229 374 0.70 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_83 - 253 DUF258 PF03193.11 161 0.00027 13.3 0.0 1 1 3.4e-06 0.00042 12.7 0.0 19 59 11 52 2 96 0.79 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_43 - 399 AAA_31 PF13614.1 157 3e-05 17.2 0.0 1 2 0.0033 0.2 4.8 0.0 8 53 116 166 109 209 0.79 # 42917 # 44113 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_43 - 399 AAA_31 PF13614.1 157 3e-05 17.2 0.0 2 2 8.2e-05 0.005 10.0 0.0 109 148 236 274 234 279 0.87 # 42917 # 44113 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_62 - 257 AAA_31 PF13614.1 157 0.00018 14.6 0.0 1 2 0.0003 0.018 8.1 0.0 5 30 68 93 66 116 0.87 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_62 - 257 AAA_31 PF13614.1 157 0.00018 14.6 0.0 2 2 0.0053 0.32 4.1 0.0 19 37 119 137 118 152 0.86 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_83 - 253 AAA_33 PF13671.1 143 0.00014 14.9 0.0 1 1 6.4e-06 0.00077 12.5 0.0 4 98 33 187 31 203 0.70 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_83 - 253 ABC_tran PF00005.22 137 1.7e-35 115.5 0.0 1 1 1.8e-37 2.2e-35 115.1 0.0 1 137 18 167 18 167 0.97 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_46 - 441 K_oxygenase PF13434.1 341 1.2e-117 385.7 0.0 1 1 1.2e-119 1.5e-117 385.5 0.0 1 340 2 332 2 333 0.95 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_75 - 225 RmlD_sub_bind PF04321.12 287 4.7e-05 15.5 0.1 1 1 5.3e-07 6.4e-05 15.1 0.1 2 89 5 114 4 129 0.82 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_75 - 225 NAD_binding_10 PF13460.1 183 2.8e-09 30.4 0.6 1 1 3.2e-11 3.9e-09 29.9 0.6 2 107 7 140 6 207 0.65 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_75 - 225 adh_short_C2 PF13561.1 241 2.3e-11 37.0 0.0 1 1 2.4e-13 2.9e-11 36.7 0.0 5 165 12 163 9 189 0.79 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_83 - 253 SbcCD_C PF13558.1 90 9.2e-05 15.5 0.0 1 2 0.044 5.3 0.3 0.0 53 72 44 64 28 83 0.73 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_83 - 253 SbcCD_C PF13558.1 90 9.2e-05 15.5 0.0 2 2 3.8e-05 0.0046 10.1 0.0 28 89 134 182 117 183 0.73 # 96571 # 97329 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 1_46 - 441 FMO-like PF00743.14 532 7.1e-07 20.9 0.0 1 2 3.6e-07 4.4e-05 15.0 0.0 85 202 97 199 80 225 0.77 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_46 - 441 FMO-like PF00743.14 532 7.1e-07 20.9 0.0 2 2 0.00071 0.086 4.1 0.0 315 337 316 338 251 348 0.88 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_46 - 441 NAD_binding_9 PF13454.1 156 4.6e-05 16.4 7.0 1 3 2.2e-05 0.0027 10.7 0.1 61 154 63 149 39 151 0.65 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_46 - 441 NAD_binding_9 PF13454.1 156 4.6e-05 16.4 7.0 2 3 0.025 3 0.8 0.1 2 20 185 203 184 213 0.81 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_46 - 441 NAD_binding_9 PF13454.1 156 4.6e-05 16.4 7.0 3 3 0.00053 0.064 6.2 0.2 121 155 292 331 206 332 0.74 # 47818 # 49140 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_75 - 225 Epimerase PF01370.16 236 3.1e-08 26.5 0.1 1 1 5.1e-10 6.2e-08 25.5 0.1 2 119 7 134 6 168 0.70 # 85966 # 86640 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.622 1_45 - 732 Plug PF07715.10 108 1.3e-22 73.4 2.0 1 1 3.9e-24 4.7e-22 71.6 2.0 3 107 43 144 41 145 0.95 # 45600 # 47795 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.528 1_62 - 257 RNA_helicase PF00910.17 107 0.0002 14.7 0.0 1 1 6e-06 0.00073 12.9 0.0 2 41 68 112 67 116 0.72 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_62 - 257 NACHT PF05729.7 166 0.00013 14.8 0.0 1 2 7.8e-05 0.0094 8.8 0.0 3 26 67 90 65 103 0.85 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_62 - 257 NACHT PF05729.7 166 0.00013 14.8 0.0 2 2 0.0028 0.33 3.7 0.0 74 159 122 207 103 214 0.68 # 74194 # 74964 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d6606ceb-8bdd-4971-8403-381bad1be6e1 # Target file: checkm_output/bins/pm1158/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1158/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d6606ceb-8bdd-4971-8403-381bad1be6e1 checkm_output/bins/pm1158/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:54 2020 # [ok]