# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_107 - 253 Mg_chelatase PF01078.16 207 8.8e-05 15.0 0.0 1 1 1.1e-06 0.00015 14.3 0.0 7 82 13 84 8 93 0.82 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_119 - 226 Eno-Rase_NADH_b PF12242.3 78 7.1e-05 15.9 0.1 1 1 1.4e-06 0.00019 14.6 0.1 40 68 4 31 1 41 0.77 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_16 - 400 MipZ PF09140.6 261 2.1e-06 20.2 0.2 1 2 4.8e-05 0.0064 8.9 0.0 2 53 111 167 110 191 0.72 # 23025 # 24224 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.517 1_16 - 400 MipZ PF09140.6 261 2.1e-06 20.2 0.2 2 2 3.7e-05 0.0049 9.2 0.0 89 135 236 282 219 290 0.86 # 23025 # 24224 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.517 1_119 - 226 3HCDH_N PF02737.13 180 5.4e-05 16.2 0.2 1 1 7.5e-07 0.0001 15.3 0.2 2 71 6 74 5 80 0.87 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_104 - 331 Usp PF00582.21 140 0.00062 13.3 0.0 1 1 1.8e-05 0.0024 11.4 0.0 4 134 99 218 96 221 0.85 # 118109 # 119101 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 1_119 - 226 NmrA PF05368.8 233 0.00013 14.6 0.1 1 1 1.7e-06 0.00023 13.8 0.1 1 71 6 78 6 98 0.84 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_129 - 257 AAA_22 PF13401.1 131 4.1e-05 17.1 0.0 1 1 2.4e-06 0.00016 15.1 0.0 5 39 65 101 61 159 0.70 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_68 - 1857 AAA_22 PF13401.1 131 5.4e-05 16.7 0.1 1 1 5.6e-06 0.00037 14.0 0.0 5 125 343 511 338 516 0.70 # 77898 # 83468 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.611 1_125 - 140 tRNA_anti-like PF12869.2 144 4.6e-07 22.7 0.0 1 1 8.2e-09 1.1e-06 21.5 0.0 34 134 41 129 2 138 0.81 # 140083 # 140502 # 1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_107 - 253 AAA_15 PF13175.1 415 0.00035 13.0 0.1 1 2 0.00037 0.05 5.9 0.0 27 43 33 65 17 98 0.76 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_107 - 253 AAA_15 PF13175.1 415 0.00035 13.0 0.1 2 2 0.00066 0.089 5.0 0.2 373 397 160 184 151 191 0.92 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_107 - 253 AAA_21 PF13304.1 303 6.8e-15 49.0 0.3 1 2 4.8e-10 6.5e-08 26.1 0.0 4 32 33 63 31 78 0.76 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_107 - 253 AAA_21 PF13304.1 303 6.8e-15 49.0 0.3 2 2 1.6e-08 2.1e-06 21.2 0.1 234 285 136 184 113 200 0.93 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_107 - 253 Miro PF08477.8 119 0.0012 12.7 0.0 1 1 1.5e-05 0.0021 11.9 0.0 3 26 32 63 30 104 0.72 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_103 - 364 ADH_zinc_N PF00107.21 130 2.4e-22 72.2 0.0 1 1 2.8e-24 3.7e-22 71.6 0.0 2 115 195 309 194 322 0.90 # 116773 # 117864 # -1 # ID=1_103;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.528 1_121 - 187 Shikimate_DH PF01488.15 135 4.7e-05 16.8 0.0 1 2 0.099 13 -0.8 0.0 71 82 47 58 16 67 0.65 # 135433 # 135993 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.588 1_121 - 187 Shikimate_DH PF01488.15 135 4.7e-05 16.8 0.0 2 2 1.4e-06 0.00019 14.9 0.0 8 39 138 169 129 171 0.86 # 135433 # 135993 # -1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.588 1_119 - 226 F420_oxidored PF03807.12 96 0.0005 13.8 0.1 1 1 1.1e-05 0.0015 12.4 0.1 4 73 8 74 5 92 0.83 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_107 - 253 SMC_N PF02463.14 220 3.4e-06 19.7 0.1 1 1 2e-07 2.7e-05 16.8 0.1 28 186 32 184 15 209 0.72 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_68 - 1857 AAA_16 PF13191.1 185 2.9e-26 85.9 3.9 1 1 6.4e-28 2.9e-26 85.9 3.9 11 185 328 508 323 508 0.87 # 77898 # 83468 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.611 1_129 - 257 AAA_16 PF13191.1 185 2.3e-06 21.0 0.3 1 2 5.7e-07 2.5e-05 17.6 0.0 5 49 48 89 44 115 0.77 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_129 - 257 AAA_16 PF13191.1 185 2.3e-06 21.0 0.3 2 2 0.068 3 1.1 0.0 139 161 120 142 98 163 0.69 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_107 - 253 AAA_16 PF13191.1 185 2.9e-05 17.4 1.1 1 1 2.4e-06 0.00011 15.6 1.1 24 65 28 69 15 205 0.75 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_107 - 253 AAA_23 PF13476.1 202 0.0016 12.1 0.1 1 1 1.9e-05 0.0026 11.4 0.1 25 37 34 46 31 51 0.87 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_119 - 226 adh_short PF00106.20 167 1.5e-20 67.1 1.6 1 1 2e-22 2.7e-20 66.3 1.6 1 163 4 161 4 164 0.80 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_16 - 400 CbiA PF01656.18 195 1.4e-20 66.8 0.0 1 1 2.3e-22 3.1e-20 65.7 0.0 1 143 112 294 112 324 0.74 # 23025 # 24224 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.517 1_107 - 253 AAA_29 PF13555.1 62 5.6e-05 16.0 0.0 1 1 8.4e-07 0.00011 15.0 0.0 22 40 27 45 15 54 0.83 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_129 - 257 AAA PF00004.24 132 9.3e-07 22.4 0.0 1 1 1.7e-08 2.3e-06 21.2 0.0 2 89 68 158 67 196 0.80 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_119 - 226 KR PF08659.5 181 0.00019 14.4 3.4 1 1 5.6e-06 0.00074 12.5 3.4 3 162 6 159 5 171 0.77 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_12 - 441 Pyr_redox_3 PF13738.1 203 1.1e-18 61.3 0.0 1 2 1e-17 1.3e-15 51.3 0.0 73 201 87 218 55 220 0.81 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 441 Pyr_redox_3 PF13738.1 203 1.1e-18 61.3 0.0 2 2 0.00017 0.022 8.1 0.0 79 144 262 337 226 369 0.68 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_107 - 253 DUF258 PF03193.11 161 0.00022 13.8 0.0 1 1 2.5e-06 0.00033 13.2 0.0 18 59 10 52 2 96 0.80 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_16 - 400 AAA_31 PF13614.1 157 3e-05 17.3 0.0 1 2 0.0012 0.17 5.2 0.0 8 53 117 167 110 210 0.79 # 23025 # 24224 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.517 1_16 - 400 AAA_31 PF13614.1 157 3e-05 17.3 0.0 2 2 5e-05 0.0067 9.7 0.0 109 148 237 275 235 280 0.87 # 23025 # 24224 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.517 1_107 - 253 AAA_33 PF13671.1 143 6.1e-05 16.3 0.0 1 1 2.4e-06 0.00032 13.9 0.0 4 98 33 187 31 204 0.80 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_119 - 226 Methyltransf_26 PF13659.1 117 0.00012 15.4 0.0 1 1 1.5e-06 0.0002 14.8 0.0 57 115 58 129 17 131 0.80 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_107 - 253 ABC_tran PF00005.22 137 1e-34 113.1 0.0 1 1 1e-36 1.3e-34 112.7 0.0 1 137 18 167 18 167 0.94 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_12 - 441 K_oxygenase PF13434.1 341 1e-117 386.1 0.0 1 1 9.2e-120 1.2e-117 385.9 0.0 1 340 2 332 2 333 0.96 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_119 - 226 THF_DHG_CYH_C PF02882.14 161 0.00056 12.3 0.1 1 1 6.3e-06 0.00084 11.8 0.1 36 112 3 84 1 112 0.74 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_119 - 226 RmlD_sub_bind PF04321.12 287 3.2e-06 19.5 0.1 1 1 3.4e-08 4.6e-06 19.0 0.1 2 88 5 114 4 129 0.80 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_119 - 226 NAD_binding_10 PF13460.1 183 3e-10 33.7 0.6 1 1 4e-12 5.4e-10 32.9 0.6 1 82 6 93 6 208 0.66 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_119 - 226 adh_short_C2 PF13561.1 241 4.4e-10 33.0 0.0 1 1 4.1e-12 5.5e-10 32.7 0.0 5 164 12 163 9 188 0.85 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_107 - 253 SbcCD_C PF13558.1 90 0.00047 13.4 0.0 1 1 4.5e-05 0.006 9.9 0.0 29 89 135 182 119 183 0.73 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_12 - 441 FMO-like PF00743.14 532 4e-06 18.5 0.0 1 1 1.9e-07 2.5e-05 15.9 0.0 135 337 135 338 92 348 0.67 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 441 NAD_binding_9 PF13454.1 156 8e-07 22.3 5.4 1 3 6.5e-06 0.00087 12.4 0.1 61 154 63 149 39 151 0.66 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 441 NAD_binding_9 PF13454.1 156 8e-07 22.3 5.4 2 3 0.0065 0.87 2.7 0.2 1 24 184 206 184 221 0.80 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 441 NAD_binding_9 PF13454.1 156 8e-07 22.3 5.4 3 3 0.00019 0.025 7.7 0.2 121 155 292 331 206 332 0.80 # 18010 # 19332 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_119 - 226 Epimerase PF01370.16 236 1.9e-07 24.1 0.1 1 1 2.7e-09 3.6e-07 23.1 0.1 1 123 6 138 6 173 0.70 # 133603 # 134280 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_13 - 732 Plug PF07715.10 108 1.2e-22 73.6 1.9 1 1 5.2e-24 3.5e-22 72.1 1.9 3 107 43 144 41 145 0.95 # 19357 # 21552 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_92 - 722 Plug PF07715.10 108 4.2e-15 49.4 0.7 1 1 2e-16 1.3e-14 47.8 0.7 4 107 68 164 65 165 0.94 # 103746 # 105911 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_129 - 257 RNA_helicase PF00910.17 107 0.00091 12.8 0.0 1 1 1.9e-05 0.0025 11.3 0.0 2 36 68 107 67 118 0.72 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_129 - 257 NACHT PF05729.7 166 3.8e-05 16.7 0.0 1 2 0.00014 0.019 7.9 0.0 3 22 67 86 65 103 0.86 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_129 - 257 NACHT PF05729.7 166 3.8e-05 16.7 0.0 2 2 0.00036 0.048 6.6 0.0 77 143 125 191 101 214 0.73 # 143551 # 144321 # -1 # ID=1_129;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_107 - 253 AAA_25 PF13481.1 194 0.00027 13.7 0.2 1 1 3.4e-06 0.00046 12.9 0.2 29 132 24 114 10 162 0.69 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_107 - 253 AAA_5 PF07728.9 139 0.00094 12.2 0.2 1 1 1.8e-05 0.0024 10.9 0.2 4 75 33 119 30 187 0.68 # 120639 # 121397 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f00d42e8-a4b4-40c0-bd39-a0a057325d82 # Target file: checkm_output/bins/pm1157/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1157/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f00d42e8-a4b4-40c0-bd39-a0a057325d82 checkm_output/bins/pm1157/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:55 2020 # [ok]