# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 206 MipZ PF09140.6 261 1.1e-13 42.9 1.0 1 2 3.4e-10 2e-08 25.7 0.1 2 46 3 45 2 56 0.84 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 MipZ PF09140.6 261 1.1e-13 42.9 1.0 2 2 2.9e-07 1.7e-05 16.1 0.2 93 141 69 117 47 132 0.81 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_2 - 95 Atg8 PF02991.11 104 0.00032 12.8 0.1 1 2 0.015 0.84 1.9 0.0 45 85 6 49 2 55 0.55 # 1435 # 1719 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.389 1_2 - 95 Atg8 PF02991.11 104 0.00032 12.8 0.1 2 2 7.4e-05 0.0043 9.2 0.0 55 92 56 93 52 94 0.93 # 1435 # 1719 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.389 1_43 - 363 MetW PF07021.7 193 0.00063 11.3 0.0 1 1 1.9e-05 0.0011 10.4 0.0 117 152 236 270 232 273 0.83 # 41857 # 42945 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.619 1_50 - 206 AAA_17 PF13207.1 121 4.7e-05 16.4 0.0 1 1 1e-06 6.1e-05 16.0 0.0 9 78 12 94 11 181 0.73 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 ArsA_ATPase PF02374.10 305 1.3e-07 23.0 0.9 1 2 7.9e-09 4.6e-07 21.2 0.1 5 45 6 45 1 57 0.87 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 ArsA_ATPase PF02374.10 305 1.3e-07 23.0 0.9 2 2 0.021 1.2 0.1 0.1 124 135 72 83 49 85 0.76 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 VirC1 PF07015.6 231 6.6e-14 43.6 0.1 1 1 2.1e-15 1.2e-13 42.8 0.1 1 123 1 114 1 173 0.82 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 Fer4_NifH PF00142.13 273 8.6e-05 13.9 0.0 1 1 2.3e-06 0.00013 13.3 0.0 8 63 10 64 3 93 0.75 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_30 - 462 AAA_23 PF13476.1 202 0.0036 9.7 4.4 1 2 0.00032 0.018 7.4 1.2 106 198 122 233 62 244 0.68 # 28878 # 30263 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_30 - 462 AAA_23 PF13476.1 202 0.0036 9.7 4.4 2 2 0.0051 0.3 3.5 0.1 144 191 349 403 302 437 0.60 # 28878 # 30263 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_50 - 206 AAA_18 PF13238.1 129 0.00034 13.1 0.0 1 1 9.4e-06 0.00055 12.4 0.0 8 84 12 86 10 106 0.67 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 CbiA PF01656.18 195 4.5e-27 86.8 0.6 1 1 1.2e-28 6.7e-27 86.3 0.6 1 142 4 122 4 173 0.75 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 AAA_31 PF13614.1 157 2.3e-11 36.0 0.1 1 2 6.6e-10 3.8e-08 25.5 0.0 1 42 2 42 2 67 0.86 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 AAA_31 PF13614.1 157 2.3e-11 36.0 0.1 2 2 8.7e-05 0.005 8.9 0.1 110 152 68 108 49 111 0.82 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_50 - 206 AAA_24 PF13479.1 213 4.5e-07 21.8 0.2 1 1 1.1e-08 6.5e-07 21.2 0.2 11 88 10 94 3 98 0.86 # 47339 # 47956 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6196954e-a645-45c4-b5b6-c50689e160c9 # Target file: checkm_output/bins/pm1153/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1153/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6196954e-a645-45c4-b5b6-c50689e160c9 checkm_output/bins/pm1153/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:51 2020 # [ok]