# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_29 - 709 Mg_chelatase PF01078.16 207 0.00091 12.1 0.0 1 1 9.6e-06 0.0017 11.2 0.0 17 69 498 550 491 558 0.84 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_12 PF08242.7 99 1.1e-14 48.4 0.3 1 1 1.4e-16 2.4e-14 47.3 0.1 1 99 50 146 50 146 0.91 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_38 - 276 UPF0020 PF01170.13 180 5.7e-05 16.4 0.1 1 1 1.1e-06 9.3e-05 15.7 0.1 47 112 64 119 23 121 0.83 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 1_25 - 279 UPF0020 PF01170.13 180 0.00033 14.0 0.0 1 2 0.00018 0.015 8.5 0.0 30 101 35 113 28 119 0.73 # 21478 # 22314 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_25 - 279 UPF0020 PF01170.13 180 0.00033 14.0 0.0 2 2 0.0095 0.83 2.9 0.0 90 116 166 192 154 194 0.71 # 21478 # 22314 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 2_43 - 822 TIGR00392 TIGR00392 861 2.2e-72 237.8 5.8 1 4 9.1e-30 1.6e-27 89.4 0.9 3 191 6 175 4 184 0.90 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 TIGR00392 TIGR00392 861 2.2e-72 237.8 5.8 2 4 0.00024 0.043 5.2 0.1 410 458 181 229 177 232 0.91 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 TIGR00392 TIGR00392 861 2.2e-72 237.8 5.8 3 4 1.2e-07 2.1e-05 16.2 0.0 199 374 229 387 222 411 0.76 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 TIGR00392 TIGR00392 861 2.2e-72 237.8 5.8 4 4 9.3e-41 1.6e-38 125.7 0.1 460 818 420 764 407 806 0.73 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_38 - 276 RrnaAD PF00398.15 262 2.6e-06 20.3 0.0 1 1 2.4e-08 4.2e-06 19.6 0.0 18 106 33 123 31 128 0.79 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_29 - 709 Rad17 PF03215.10 519 0.00033 13.1 0.0 1 1 3.4e-06 0.00059 12.2 0.0 49 70 507 528 494 560 0.82 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_18 PF12847.2 112 3.8e-16 53.4 0.0 1 1 6.6e-18 1.2e-15 51.8 0.0 4 107 48 146 45 150 0.91 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 1_41 - 347 Pyr_redox_2 PF07992.9 201 0.001 12.7 0.1 1 1 7.7e-06 0.0013 12.3 0.1 3 119 171 289 169 343 0.63 # 33240 # 34280 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_29 - 709 AAA_22 PF13401.1 131 1.6e-05 18.8 0.5 1 1 1.8e-06 0.00032 14.5 0.5 6 99 505 644 501 671 0.56 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_11 PF08241.7 95 1.1e-21 70.9 0.1 1 1 2.1e-23 1.8e-21 70.2 0.1 1 94 50 147 50 148 0.98 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 1_46 - 341 Methyltransf_11 PF08241.7 95 0.00043 14.5 0.1 1 2 0.0073 0.64 4.3 0.2 2 29 3 34 2 102 0.62 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_46 - 341 Methyltransf_11 PF08241.7 95 0.00043 14.5 0.1 2 2 0.00049 0.043 8.1 0.0 32 73 100 141 71 156 0.70 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 3_28 - 913 DUF927 PF06048.6 286 2.1e-48 158.7 0.0 1 1 2.1e-50 3.7e-48 157.9 0.0 3 284 358 636 356 638 0.92 # 22744 # 25482 # 1 # ID=3_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_29 - 449 DNA_methylase PF00145.12 335 1.9e-45 149.0 0.0 1 1 1.6e-47 2.9e-45 148.5 0.0 3 333 4 440 2 442 0.79 # 24187 # 25533 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_46 - 341 NAD_binding_7 PF13241.1 103 0.0013 12.7 0.0 1 1 1.5e-05 0.0027 11.7 0.0 9 79 3 98 2 108 0.60 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_29 - 709 AAA_17 PF13207.1 121 2.9e-05 18.6 0.0 1 1 3.5e-07 6.2e-05 17.5 0.0 2 24 506 538 505 677 0.79 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_29 - 709 AAA_21 PF13304.1 303 2e-08 28.2 0.1 1 2 7.3e-08 1.3e-05 19.0 0.0 3 26 507 534 505 559 0.74 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_29 - 709 AAA_21 PF13304.1 303 2e-08 28.2 0.1 2 2 0.00037 0.065 6.8 0.0 237 271 614 645 591 665 0.87 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_41 - 347 ADH_zinc_N_2 PF13602.1 127 1.1e-06 23.3 0.0 1 1 1e-08 1.8e-06 22.6 0.0 1 114 210 328 210 343 0.73 # 33240 # 34280 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_29 - 709 Miro PF08477.8 119 0.00076 13.7 0.0 1 1 8.5e-06 0.0015 12.7 0.0 2 25 506 529 505 588 0.77 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_41 - 347 ADH_zinc_N PF00107.21 130 6.8e-27 87.3 0.0 1 1 7.3e-29 1.3e-26 86.4 0.0 1 117 177 293 177 304 0.94 # 33240 # 34280 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 3_42 - 1858 Helicase_C PF00271.26 78 1.5e-07 25.0 0.0 1 1 2.2e-09 3.9e-07 23.6 0.0 23 78 1458 1514 1443 1514 0.87 # 38079 # 43652 # 1 # ID=3_42;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 2_38 - 276 Methyltransf_24 PF13578.1 106 6.8e-05 17.4 0.0 1 1 6.7e-07 0.00012 16.6 0.0 1 101 50 146 50 148 0.72 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 1_46 - 341 F420_oxidored PF03807.12 96 0.00021 15.4 0.0 1 1 2.7e-06 0.00047 14.3 0.0 1 45 3 45 3 85 0.69 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_38 - 276 CheR PF01739.13 196 4e-12 39.5 3.6 1 3 0.00096 0.17 4.8 0.1 63 80 67 84 36 87 0.78 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_38 - 276 CheR PF01739.13 196 4e-12 39.5 3.6 2 3 1.3e-12 2.2e-10 33.8 0.3 109 171 86 146 82 148 0.89 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_38 - 276 CheR PF01739.13 196 4e-12 39.5 3.6 3 3 0.021 3.7 0.4 0.0 71 100 202 231 195 255 0.80 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_29 - 709 SMC_N PF02463.14 220 1e-08 28.4 0.3 1 2 0.00033 0.057 6.3 0.1 26 42 505 521 493 526 0.82 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_29 - 709 SMC_N PF02463.14 220 1e-08 28.4 0.3 2 2 2.2e-08 3.8e-06 19.9 0.0 136 212 613 683 537 690 0.82 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_16 PF10294.4 174 1.6e-05 18.1 0.0 1 1 1.4e-07 2.4e-05 17.5 0.0 45 139 44 133 29 159 0.75 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_29 - 709 AAA_16 PF13191.1 185 5.1e-06 20.3 0.4 1 1 1.1e-07 2e-05 18.3 0.3 24 58 503 538 491 666 0.77 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_29 - 709 AAA_18 PF13238.1 129 0.00081 13.4 0.0 1 1 9.6e-06 0.0017 12.4 0.0 1 23 506 532 506 589 0.75 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_63 - 1709 adh_short PF00106.20 167 4.2e-45 147.3 0.5 1 1 3.4e-46 2.9e-44 144.6 0.4 1 167 1361 1529 1361 1529 0.98 # 63907 # 69033 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 2_47 - 320 adh_short PF00106.20 167 2.6e-15 50.4 0.3 1 1 1.1e-16 9.4e-15 48.6 0.0 1 139 29 160 29 168 0.89 # 40651 # 41610 # 1 # ID=2_47;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.456 1_63 - 1709 Polysacc_synt_2 PF02719.10 294 0.00041 13.0 0.0 1 1 3.6e-06 0.00064 12.3 0.0 2 87 1364 1452 1363 1501 0.78 # 63907 # 69033 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 2_38 - 276 Methyltransf_25 PF13649.1 101 2.1e-12 41.0 0.1 1 1 2.1e-14 3.7e-12 40.3 0.1 1 101 49 144 49 144 0.88 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_29 - 709 AAA_14 PF13173.1 128 0.00078 13.1 0.0 1 1 1.1e-05 0.0019 11.8 0.0 4 36 505 537 502 595 0.76 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_43 - 822 tRNA-synt_1d PF00750.14 354 1.2e-07 24.6 1.0 1 2 3.7e-07 6.5e-05 15.5 0.0 29 61 46 78 44 84 0.93 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1d PF00750.14 354 1.2e-07 24.6 1.0 2 2 0.00015 0.027 6.9 0.0 271 304 566 595 544 604 0.85 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1 PF00133.17 601 4.5e-75 246.4 3.2 1 5 3.1e-29 5.5e-27 87.6 0.5 3 179 19 176 17 179 0.87 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1 PF00133.17 601 4.5e-75 246.4 3.2 2 5 3e-06 0.00053 11.7 0.2 363 412 180 229 176 233 0.94 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1 PF00133.17 601 4.5e-75 246.4 3.2 3 5 2.3e-17 4e-15 48.4 0.0 186 349 232 411 229 421 0.84 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1 PF00133.17 601 4.5e-75 246.4 3.2 4 5 5e-31 8.7e-29 93.6 0.0 415 601 421 619 417 619 0.74 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1 PF00133.17 601 4.5e-75 246.4 3.2 5 5 0.054 9.5 -2.3 0.1 463 498 658 690 629 707 0.59 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1g PF09334.6 391 1.1e-35 116.7 0.2 1 4 6.7e-23 1.2e-20 67.2 0.0 5 135 43 175 39 180 0.95 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1g PF09334.6 391 1.1e-35 116.7 0.2 2 4 7.8e-05 0.014 7.7 0.1 161 220 172 230 168 239 0.90 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1g PF09334.6 391 1.1e-35 116.7 0.2 3 4 0.0091 1.6 0.9 0.0 219 238 417 436 399 445 0.83 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1g PF09334.6 391 1.1e-35 116.7 0.2 4 4 7.6e-14 1.3e-11 37.4 0.0 314 390 566 640 551 641 0.87 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_29 - 709 AAA_29 PF13555.1 62 7.7e-06 19.1 0.0 1 1 1.5e-07 2.7e-05 17.4 0.0 12 40 493 520 491 534 0.83 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_29 - 709 AAA PF00004.24 132 0.00079 13.4 0.1 1 1 2.9e-05 0.0051 10.7 0.1 2 23 507 528 506 678 0.70 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Ubie_methyltran PF01209.13 233 1.2e-11 37.8 0.3 1 1 1e-13 1.8e-11 37.2 0.3 48 153 46 150 34 168 0.88 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 1_63 - 1709 KR PF08659.5 181 3e-58 190.1 1.0 1 1 6.1e-60 5.4e-58 189.3 0.2 1 180 1361 1541 1361 1542 0.99 # 63907 # 69033 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 2_47 - 320 KR PF08659.5 181 7.4e-06 19.4 0.0 1 1 1.1e-07 9.9e-06 19.0 0.0 3 93 31 113 30 190 0.87 # 40651 # 41610 # 1 # ID=2_47;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.456 2_43 - 822 tRNA-synt_1_2 PF13603.1 185 1.8e-68 223.2 0.0 1 1 1.6e-70 2.8e-68 222.5 0.0 1 184 225 406 225 407 0.97 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_38 - 276 PCMT PF01135.14 210 0.00022 14.5 0.0 1 1 1.9e-06 0.00033 13.9 0.0 70 145 42 116 32 125 0.81 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_43 - 822 tRNA-synt_1b PF00579.20 292 0.00022 14.1 0.6 1 2 6.2e-06 0.0011 11.8 0.1 163 209 542 589 539 675 0.56 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1b PF00579.20 292 0.00022 14.1 0.6 2 2 0.017 3 0.5 0.2 72 263 667 712 626 723 0.55 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_37 - 360 tRNA-synt_2 PF00152.15 335 6.4e-39 127.3 0.0 1 1 4.7e-41 8.3e-39 126.9 0.0 18 333 47 352 38 354 0.86 # 29428 # 30507 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 2_29 - 709 DUF258 PF03193.11 161 6.1e-06 19.2 0.0 1 1 1.4e-07 2.5e-05 17.2 0.0 33 92 501 564 483 583 0.77 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_26 PF13659.1 117 2.2e-08 27.8 0.0 1 1 7e-10 4.1e-08 27.0 0.0 3 112 48 147 46 150 0.84 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 3_42 - 1858 Methyltransf_26 PF13659.1 117 0.00011 15.9 0.0 1 1 6.2e-06 0.00036 14.3 0.0 25 116 144 236 122 237 0.69 # 38079 # 43652 # 1 # ID=3_42;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 1_25 - 279 Methyltransf_26 PF13659.1 117 0.00014 15.6 0.0 1 1 7.5e-06 0.00044 14.0 0.0 3 82 36 194 34 258 0.78 # 21478 # 22314 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 1_46 - 341 2-Hacid_dh_C PF02826.14 178 0.00066 12.6 0.0 1 1 6.9e-06 0.0012 11.7 0.0 38 73 3 38 2 58 0.84 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_46 - 341 XdhC_C PF13478.1 136 0.00015 15.8 0.0 1 1 1.7e-06 0.0003 14.8 0.0 3 64 6 69 4 82 0.76 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_29 - 709 AAA_30 PF13604.1 196 0.0017 11.7 0.0 1 1 2e-05 0.0035 10.6 0.0 18 52 504 539 498 650 0.65 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 1_46 - 341 ApbA PF02558.11 151 5.1e-13 42.4 0.0 1 1 5.4e-15 9.4e-13 41.6 0.0 1 147 4 161 4 165 0.79 # 40777 # 41799 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_38 - 276 MTS PF05175.9 170 4.9e-08 26.2 0.1 1 1 4.4e-10 7.6e-08 25.6 0.1 31 104 45 119 35 150 0.89 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_43 - 822 tRNA-synt_1f PF01921.13 360 1.8e-08 27.1 0.0 1 2 0.00063 0.11 4.8 0.0 33 62 48 77 45 86 0.83 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1f PF01921.13 360 1.8e-08 27.1 0.0 2 2 2.3e-08 4e-06 19.4 0.0 275 319 572 617 555 650 0.81 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_29 - 709 ABC_tran PF00005.22 137 5.9e-35 114.3 0.0 1 1 5.6e-37 9.8e-35 113.5 0.0 2 137 494 642 493 642 0.86 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_43 - 822 tRNA-synt_1e PF01406.14 301 2.1e-08 27.3 0.0 1 2 0.0026 0.46 3.2 0.0 22 48 51 77 38 79 0.87 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_43 - 822 tRNA-synt_1e PF01406.14 301 2.1e-08 27.3 0.0 2 2 7e-09 1.2e-06 21.5 0.0 236 297 563 624 527 628 0.84 # 34312 # 36777 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.406 2_29 - 709 AAA_19 PF13245.1 76 0.00017 15.0 0.0 1 1 3.1e-06 0.00055 13.4 0.0 9 37 503 529 496 557 0.83 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_47 - 320 NAD_binding_10 PF13460.1 183 2.6e-07 24.5 0.0 1 1 2.7e-09 4.7e-07 23.6 0.0 3 152 33 220 32 241 0.66 # 40651 # 41610 # 1 # ID=2_47;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.456 2_29 - 709 AAA_10 PF12846.2 304 0.00077 12.6 0.0 1 1 1.2e-05 0.002 11.2 0.0 3 31 505 533 503 537 0.78 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 NodS PF05401.6 201 5.8e-07 22.8 0.2 1 1 4.8e-09 8.4e-07 22.2 0.2 45 124 47 131 34 147 0.79 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_47 - 320 adh_short_C2 PF13561.1 241 1.5e-06 21.8 0.0 1 1 2.6e-08 4.6e-06 20.2 0.0 5 86 37 114 35 162 0.82 # 40651 # 41610 # 1 # ID=2_47;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.456 2_29 - 709 SbcCD_C PF13558.1 90 0.00021 14.9 1.2 1 1 4.4e-06 0.00077 13.1 0.1 24 88 605 656 582 658 0.76 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_44 - 406 tRNA-synt_2b PF00587.20 173 5.9e-10 32.7 0.9 1 1 6.1e-12 1.1e-09 31.8 0.9 3 143 74 212 68 251 0.74 # 36861 # 38078 # 1 # ID=2_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.369 3_42 - 1858 ResIII PF04851.10 184 2.1e-05 18.1 0.0 1 2 1.3e-05 0.0023 11.5 0.0 23 85 851 917 798 937 0.80 # 38079 # 43652 # 1 # ID=3_42;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 3_42 - 1858 ResIII PF04851.10 184 2.1e-05 18.1 0.0 2 2 0.0056 0.98 2.9 0.0 137 182 1027 1114 955 1116 0.67 # 38079 # 43652 # 1 # ID=3_42;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 2_38 - 276 Methyltransf_31 PF13847.1 152 2.8e-18 59.6 0.6 1 1 2e-20 3.4e-18 59.4 0.6 2 112 44 152 43 225 0.86 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_38 - 276 Methyltransf_3 PF01596.12 205 6.5e-08 25.5 0.2 1 1 5.5e-10 9.6e-08 25.0 0.2 47 157 47 145 40 172 0.80 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_47 - 320 Epimerase PF01370.16 236 1.1e-05 18.6 0.0 1 1 8.7e-08 1.5e-05 18.2 0.0 2 177 32 221 31 230 0.74 # 40651 # 41610 # 1 # ID=2_47;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.456 2_38 - 276 PrmA PF06325.8 295 8.6e-10 31.8 0.2 1 1 6.3e-12 1.1e-09 31.5 0.2 158 232 42 120 33 183 0.81 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 3_5 - 519 TIGR00344 TIGR00344 847 6.2e-05 14.7 0.9 1 1 5.1e-07 8.9e-05 14.2 0.9 684 782 185 278 142 293 0.75 # 2924 # 4480 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 2_38 - 276 TIGR00755 TIGR00755 256 1.9e-06 20.7 0.1 1 1 1.7e-08 3e-06 20.1 0.1 17 102 33 122 30 125 0.81 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 1_25 - 279 MethyltransfD12 PF02086.10 260 2.4e-59 194.5 0.2 1 1 1.6e-61 2.7e-59 194.4 0.2 1 260 16 261 16 261 0.94 # 21478 # 22314 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_23 PF13489.1 161 9.1e-13 41.9 0.0 1 1 9.1e-15 1.6e-12 41.1 0.0 15 111 36 146 27 149 0.87 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 2_29 - 709 NACHT PF05729.7 166 0.00078 12.8 0.1 1 1 1.3e-05 0.0022 11.3 0.0 3 21 506 524 504 529 0.89 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_29 - 709 AAA_25 PF13481.1 194 0.00038 13.6 0.0 1 1 5.1e-06 0.00089 12.4 0.0 28 55 499 525 477 570 0.85 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_37 - 360 tRNA-synt_2d PF01409.15 247 8.8e-06 18.7 0.5 1 2 0.00034 0.059 6.2 0.0 111 134 131 154 121 180 0.80 # 29428 # 30507 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 2_37 - 360 tRNA-synt_2d PF01409.15 247 8.8e-06 18.7 0.5 2 2 1.5e-05 0.0026 10.6 0.1 213 235 323 345 314 349 0.90 # 29428 # 30507 # 1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 3_42 - 1858 SNF2_N PF00176.18 299 1.4e-18 60.3 0.0 1 1 2.8e-20 4.8e-18 58.6 0.0 27 298 855 1262 842 1263 0.75 # 38079 # 43652 # 1 # ID=3_42;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 2_29 - 709 AAA_28 PF13521.1 163 0.00057 13.6 0.1 1 1 7e-06 0.0012 12.5 0.1 2 21 506 525 505 555 0.90 # 20481 # 22607 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.434 2_38 - 276 Methyltransf_4 PF02390.12 197 0.00013 14.7 0.1 1 1 2.2e-06 0.00039 13.2 0.1 11 95 38 118 27 150 0.82 # 30595 # 31422 # 1 # ID=2_38;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.379 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fb67764a-0736-491d-b208-64b744d37bd7 # Target file: checkm_output/bins/pm115/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm115/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fb67764a-0736-491d-b208-64b744d37bd7 checkm_output/bins/pm115/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:50 2020 # [ok]