# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_92 - 172 FeoB_N PF02421.13 156 0.0011 11.3 0.1 1 2 5.9e-05 0.0062 8.8 0.0 3 19 49 65 47 73 0.87 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_92 - 172 FeoB_N PF02421.13 156 0.0011 11.3 0.1 2 2 0.056 6 -0.9 0.0 112 136 113 137 111 143 0.86 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_71 - 431 MipZ PF09140.6 261 3e-05 16.2 0.7 1 2 0.00016 0.017 7.1 0.1 2 51 140 194 139 219 0.73 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_71 - 431 MipZ PF09140.6 261 3e-05 16.2 0.7 2 2 0.00015 0.015 7.3 0.1 89 135 266 312 251 317 0.83 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_46 - 562 3HCDH_N PF02737.13 180 0.02 7.5 7.0 1 2 0.0086 0.91 2.1 2.8 1 30 100 129 100 133 0.93 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 3HCDH_N PF02737.13 180 0.02 7.5 7.0 2 2 0.00028 0.029 7.0 0.1 2 37 273 308 272 359 0.72 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 GIDA PF01134.17 392 2.2e-06 19.7 10.0 1 3 2.6e-08 2.8e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 GIDA PF01134.17 392 2.2e-06 19.7 10.0 2 3 0.079 8.4 -2.0 0.0 141 175 340 371 320 388 0.69 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 GIDA PF01134.17 392 2.2e-06 19.7 10.0 3 3 0.0084 0.9 1.2 0.1 349 385 390 426 376 430 0.79 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 Pyr_redox_2 PF07992.9 201 9.9e-43 139.3 0.2 1 1 1.8e-44 1.9e-42 138.4 0.2 1 199 100 407 100 409 0.96 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_16 - 688 DUF87 PF01935.12 229 4.3e-28 91.6 0.0 1 1 2.8e-28 3e-26 85.6 0.0 2 229 154 506 153 506 0.83 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_16 - 688 AAA_22 PF13401.1 131 3.6e-05 16.9 0.1 1 2 1.2e-05 0.00064 12.9 0.0 5 41 176 215 174 237 0.77 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_16 - 688 AAA_22 PF13401.1 131 3.6e-05 16.9 0.1 2 2 0.053 2.8 1.1 0.0 51 100 459 534 420 563 0.68 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_104 - 253 AAA_22 PF13401.1 131 8.4e-05 15.7 0.0 1 1 5.1e-06 0.00027 14.1 0.0 3 26 173 196 169 235 0.82 # 81083 # 81841 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.432 1_46 - 562 Trp_halogenase PF04820.9 454 0.0048 8.5 3.3 1 1 8.1e-05 0.0086 7.6 3.3 1 47 100 143 100 151 0.76 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 NAD_binding_7 PF13241.1 103 4.7e-06 19.9 1.0 1 2 1.9e-05 0.002 11.4 0.2 9 38 100 129 96 164 0.90 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 NAD_binding_7 PF13241.1 103 4.7e-06 19.9 1.0 2 2 0.00062 0.065 6.5 0.1 8 41 271 307 264 383 0.68 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 334 ADH_zinc_N_2 PF13602.1 127 5.5e-24 78.5 0.0 1 1 8.4e-26 8.9e-24 77.8 0.0 1 127 190 330 190 330 0.82 # 22926 # 23927 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_22 - 334 ADH_zinc_N PF00107.21 130 2.6e-22 71.7 0.2 1 1 4.3e-24 4.6e-22 71.0 0.2 1 120 158 276 158 288 0.93 # 22926 # 23927 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_71 - 431 ArsA_ATPase PF02374.10 305 1.3e-05 17.3 0.1 1 1 3.6e-07 3.8e-05 15.8 0.0 4 136 142 285 139 288 0.70 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_92 - 172 MCM PF00493.18 331 0.0007 11.4 0.0 1 1 9.8e-06 0.001 10.8 0.0 53 76 42 65 35 73 0.89 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_46 - 562 NAD_binding_8 PF13450.1 68 7.3e-05 15.8 1.2 1 1 6.9e-07 7.3e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_71 - 431 Fer4_NifH PF00142.13 273 0.00017 13.8 0.0 1 1 4.2e-06 0.00045 12.4 0.0 8 76 147 221 141 228 0.82 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_92 - 172 AAA_16 PF13191.1 185 0.00091 12.2 0.0 1 1 1.3e-05 0.0014 11.6 0.0 27 45 49 67 29 82 0.82 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_71 - 431 CbiA PF01656.18 195 1.9e-19 62.8 0.0 1 1 3.2e-21 3.4e-19 62.0 0.0 1 144 141 325 141 364 0.75 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_46 - 562 HI0933_like PF03486.9 409 1.6e-08 26.3 4.6 1 2 4.3e-07 4.5e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 HI0933_like PF03486.9 409 1.6e-08 26.3 4.6 2 2 8.3e-06 0.00088 10.7 0.0 83 163 286 362 281 379 0.85 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_82 - 94 CobA_CobO_BtuR PF02572.10 172 0.00027 13.6 0.0 1 1 2.9e-06 0.00031 13.4 0.0 115 159 2 47 1 58 0.89 # 66973 # 67254 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_46 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 1 3 9.5e-09 1e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 2 3 0.028 2.9 -0.5 0.2 142 204 311 366 297 379 0.68 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 3 3 0.0019 0.2 3.4 0.1 373 402 374 405 369 419 0.86 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_26 - 98 Ubie_methyltran PF01209.13 233 0.00068 11.7 0.0 1 1 7.4e-06 0.00079 11.5 0.0 114 155 13 53 3 73 0.78 # 28383 # 28676 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.347 1_46 - 562 Thi4 PF01946.12 230 0.0003 12.9 0.4 1 1 6.3e-06 0.00067 11.7 0.4 19 70 100 150 95 158 0.88 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 Pyr_redox_3 PF13738.1 203 1.8e-17 57.0 0.1 1 3 1.5e-06 0.00016 14.8 0.0 164 199 95 130 48 134 0.85 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 Pyr_redox_3 PF13738.1 203 1.8e-17 57.0 0.1 2 3 5.8e-09 6.2e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 Pyr_redox_3 PF13738.1 203 1.8e-17 57.0 0.1 3 3 6.7e-07 7.1e-05 15.9 0.0 89 147 317 372 309 431 0.82 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_92 - 172 MMR_HSR1 PF01926.18 116 0.00051 13.0 0.0 1 1 7.8e-06 0.00083 12.3 0.0 2 20 49 67 48 94 0.83 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_92 - 172 DUF258 PF03193.11 161 0.00015 14.0 0.0 1 1 2e-06 0.00021 13.5 0.0 38 61 49 72 12 85 0.69 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_71 - 431 AAA_31 PF13614.1 157 9.8e-07 21.8 0.3 1 3 0.097 10 -1.0 0.0 74 115 14 56 6 61 0.58 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_71 - 431 AAA_31 PF13614.1 157 9.8e-07 21.8 0.3 2 3 0.00034 0.036 7.0 0.0 2 90 140 234 139 249 0.73 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_71 - 431 AAA_31 PF13614.1 157 9.8e-07 21.8 0.3 3 3 1.7e-05 0.0018 11.2 0.0 108 148 266 305 264 308 0.87 # 59852 # 61144 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 1_16 - 688 FtsK_SpoIIIE PF01580.13 205 8.9e-07 21.5 0.0 1 2 6.8e-08 7.2e-06 18.6 0.0 22 80 157 221 138 234 0.64 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_16 - 688 FtsK_SpoIIIE PF01580.13 205 8.9e-07 21.5 0.0 2 2 0.04 4.2 -0.3 0.0 180 204 552 576 512 577 0.82 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_92 - 172 ABC_tran PF00005.22 137 0.001 12.4 0.0 1 1 1.6e-05 0.0017 11.6 0.0 4 29 39 64 37 85 0.88 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 1_46 - 562 K_oxygenase PF13434.1 341 6.5e-06 18.2 0.1 1 3 0.0041 0.43 2.3 0.2 187 223 95 129 86 132 0.74 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 K_oxygenase PF13434.1 341 6.5e-06 18.2 0.1 2 3 2.9e-06 0.00031 12.7 0.0 130 231 217 309 199 338 0.79 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 K_oxygenase PF13434.1 341 6.5e-06 18.2 0.1 3 3 0.094 10 -2.2 0.0 143 160 349 366 319 372 0.67 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_16 - 688 AAA_10 PF12846.2 304 1.4e-20 66.9 0.0 1 1 7.5e-22 8e-20 64.4 0.0 2 297 176 605 175 610 0.67 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_46 - 562 FAD_oxidored PF12831.2 428 6.3e-07 21.7 3.8 1 2 5.9e-09 6.3e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 FAD_oxidored PF12831.2 428 6.3e-07 21.7 3.8 2 2 0.0097 1 1.2 0.0 84 120 305 341 261 365 0.69 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 DAO PF01266.19 358 2.3e-12 39.4 7.4 1 2 1.9e-08 2e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 DAO PF01266.19 358 2.3e-12 39.4 7.4 2 2 2.6e-09 2.7e-07 22.7 0.4 151 239 314 400 274 529 0.80 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 Pyr_redox PF00070.22 80 1e-19 63.7 5.0 1 2 1.2e-06 0.00013 15.4 1.5 2 31 101 130 100 132 0.95 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 Pyr_redox PF00070.22 80 1e-19 63.7 5.0 2 2 4.2e-17 4.5e-15 48.9 0.1 1 71 272 341 272 350 0.92 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_16 - 688 TrwB_AAD_bind PF10412.4 386 8.3e-09 27.4 0.0 1 2 1.8e-08 1.9e-06 19.6 0.0 10 58 170 226 162 232 0.88 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_16 - 688 TrwB_AAD_bind PF10412.4 386 8.3e-09 27.4 0.0 2 2 0.00041 0.043 5.3 0.0 261 321 554 606 551 617 0.84 # 16689 # 18752 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_104 - 253 Sigma54_activ_2 PF14532.1 138 0.00096 12.2 0.0 1 1 1.7e-05 0.0018 11.3 0.0 15 42 168 195 161 212 0.90 # 81083 # 81841 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.432 1_46 - 562 AlaDh_PNT_C PF01262.16 168 8.9e-07 21.6 2.3 1 2 3.9e-06 0.00042 12.9 0.3 16 50 94 128 80 131 0.87 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 562 AlaDh_PNT_C PF01262.16 168 8.9e-07 21.6 2.3 2 2 0.00012 0.012 8.1 0.1 19 60 269 310 260 341 0.84 # 39215 # 40900 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_104 - 253 AAA_25 PF13481.1 194 0.001 11.4 0.0 1 1 1.4e-05 0.0015 10.9 0.0 28 50 169 191 148 234 0.84 # 81083 # 81841 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.432 1_92 - 172 AAA_5 PF07728.9 139 0.00042 13.1 0.0 1 1 7.5e-06 0.00079 12.2 0.0 1 18 48 65 48 86 0.87 # 73119 # 73634 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.494 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5ced02b8-be82-4d90-920c-070524a124d5 # Target file: checkm_output/bins/pm1145/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1145/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5ced02b8-be82-4d90-920c-070524a124d5 checkm_output/bins/pm1145/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:49 2020 # [ok]