# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 260 IstB_IS21 PF01695.12 178 4.5e-66 213.6 0.0 1 1 2.2e-67 1.1e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_7 - 221 MipZ PF09140.6 261 3.9e-10 31.2 1.8 1 1 2.5e-09 1.3e-07 22.9 1.3 2 130 4 111 3 132 0.75 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_21 - 260 AAA_22 PF13401.1 131 6.5e-07 21.6 0.0 1 2 4.1e-06 0.00022 13.4 0.1 4 28 101 125 98 148 0.75 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_22 PF13401.1 131 6.5e-07 21.6 0.0 2 2 0.00082 0.043 6.0 0.0 77 101 151 178 124 201 0.64 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_7 - 221 ATP_bind_1 PF03029.12 238 0.00043 11.8 0.2 1 1 0.00015 0.0077 7.7 0.2 6 40 13 47 10 115 0.83 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 SRP54 PF00448.17 196 0.00026 12.4 0.1 1 1 1.1e-05 0.00055 11.4 0.1 10 98 12 94 3 134 0.78 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_21 - 260 AAA_17 PF13207.1 121 0.0002 14.2 0.0 1 1 6.5e-06 0.00034 13.4 0.0 2 26 104 131 103 216 0.74 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_36 - 257 Adenylsucc_synt PF00709.16 421 0.00097 9.8 4.4 1 2 1.2e-05 0.00061 10.4 0.2 157 229 49 122 31 126 0.75 # 30612 # 31382 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.490 1_36 - 257 Adenylsucc_synt PF00709.16 421 0.00097 9.8 4.4 2 2 0.011 0.55 0.7 0.7 142 177 194 230 147 253 0.53 # 30612 # 31382 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 MobB PF03205.9 140 5.4e-06 18.1 0.7 1 2 1e-05 0.00053 11.7 0.3 2 37 4 40 3 52 0.86 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 MobB PF03205.9 140 5.4e-06 18.1 0.7 2 2 0.0016 0.082 4.6 0.0 44 75 85 119 72 133 0.81 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 ArsA_ATPase PF02374.10 305 3.5e-09 28.0 0.1 1 1 1.2e-10 6.4e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_21 - 260 PhoH PF02562.11 205 1.7e-07 22.7 0.1 1 1 5e-09 2.6e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AFG1_ATPase PF03969.11 362 0.00016 12.5 0.0 1 1 5.8e-06 0.0003 11.6 0.0 64 214 103 251 81 258 0.78 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_29 - 345 T2SE PF00437.15 272 2.8e-46 149.5 0.0 1 1 6.4e-48 3.3e-46 149.3 0.0 12 246 26 286 15 317 0.88 # 24979 # 26013 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_29 - 345 Zeta_toxin PF06414.7 201 0.00021 12.4 0.0 1 1 8.2e-06 0.00043 11.4 0.0 17 59 166 209 153 235 0.76 # 24979 # 26013 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_7 - 221 VirC1 PF07015.6 231 7.5e-09 26.9 0.0 1 1 2.6e-10 1.4e-08 26.1 0.0 3 55 4 56 2 61 0.92 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 Fer4_NifH PF00142.13 273 7.9e-07 20.4 0.2 1 1 3.7e-08 1.9e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_21 - 260 AAA_16 PF13191.1 185 7.6e-06 18.0 2.4 1 3 1.2e-06 6.2e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_16 PF13191.1 185 7.6e-06 18.0 2.4 2 3 0.035 1.8 0.4 0.0 124 162 143 175 125 192 0.74 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_16 PF13191.1 185 7.6e-06 18.0 2.4 3 3 0.072 3.8 -0.6 0.0 38 62 217 242 207 252 0.75 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_36 - 257 AAA_13 PF13166.1 712 7.2e-05 13.3 7.2 1 2 1.7e-06 8.6e-05 13.0 0.0 316 409 29 122 8 141 0.89 # 30612 # 31382 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.490 1_36 - 257 AAA_13 PF13166.1 712 7.2e-05 13.3 7.2 2 2 0.014 0.73 0.1 5.6 87 155 161 229 146 254 0.40 # 30612 # 31382 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 CbiA PF01656.18 195 2.1e-15 48.6 0.6 1 1 2.2e-16 5.6e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_21 - 260 CbiA PF01656.18 195 0.0005 11.5 0.0 1 1 2.5e-05 0.00065 11.1 0.0 3 42 105 145 104 254 0.75 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_14 PF13173.1 128 1.8e-07 23.1 0.0 1 2 1.7e-08 8.9e-07 20.9 0.0 3 97 102 203 100 219 0.64 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_14 PF13173.1 128 1.8e-07 23.1 0.0 2 2 0.048 2.5 0.0 0.0 14 46 215 247 212 257 0.80 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_51 - 172 B5 PF03484.10 70 5.7e-05 14.9 0.0 1 2 0.032 1.7 0.6 0.0 12 38 7 35 1 50 0.76 # 40573 # 41088 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_51 - 172 B5 PF03484.10 70 5.7e-05 14.9 0.0 2 2 1e-05 0.00053 11.9 0.0 16 59 91 144 77 155 0.67 # 40573 # 41088 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_21 - 260 AAA PF00004.24 132 1.1e-08 27.3 0.0 1 1 4.1e-10 2.1e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 Bac_DnaA PF00308.13 219 2.7e-09 28.9 0.0 1 1 7.8e-11 4e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 DUF258 PF03193.11 161 0.00011 13.4 0.0 1 1 3.7e-06 0.00019 12.6 0.0 26 59 92 125 80 153 0.82 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_28 - 612 TraG-D_C PF12696.2 128 5.2e-29 92.7 0.0 1 1 1.7e-30 8.8e-29 92.0 0.0 2 127 416 534 415 535 0.86 # 23141 # 24976 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_31 - 405 DLIC PF05783.6 472 0.0075 6.8 5.0 1 1 0.00026 0.013 6.0 5.0 353 459 90 202 78 209 0.70 # 26209 # 27423 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_7 - 221 AAA_31 PF13614.1 157 4.1e-07 22.0 0.0 1 2 8.5e-07 4.4e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 AAA_31 PF13614.1 157 4.1e-07 22.0 0.0 2 2 0.0021 0.11 4.4 0.0 111 151 73 112 63 115 0.83 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_21 - 260 NTPase_1 PF03266.10 168 0.00012 13.8 0.1 1 2 0.0015 0.079 4.6 0.1 2 30 104 132 103 143 0.82 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 NTPase_1 PF03266.10 168 0.00012 13.8 0.1 2 2 0.0003 0.016 6.9 0.0 87 108 155 176 141 202 0.77 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 ABC_tran PF00005.22 137 0.00027 13.2 0.2 1 1 2e-05 0.0011 11.3 0.1 8 31 98 121 95 132 0.86 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_8 - 221 RuvB_N PF05496.7 234 0.0002 12.4 0.2 1 1 7.7e-06 0.0004 11.4 0.0 78 119 46 86 40 101 0.90 # 4285 # 4947 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 1_21 - 260 AAA_19 PF13245.1 76 0.00035 12.3 0.2 1 1 2.6e-05 0.0014 10.5 0.0 11 35 103 126 95 157 0.81 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_37 - 918 AAA_10 PF12846.2 304 3.8e-35 113.7 0.0 1 1 3.7e-36 9.6e-35 112.4 0.0 3 294 539 825 538 832 0.93 # 31392 # 34145 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.463 1_21 - 260 AAA_10 PF12846.2 304 1.9e-05 16.1 0.2 1 2 0.029 0.75 1.1 0.0 106 155 28 69 4 89 0.61 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_10 PF12846.2 304 1.9e-05 16.1 0.2 2 2 8.8e-06 0.00023 12.6 0.1 3 35 103 135 101 172 0.84 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_29 - 345 DEAD PF00270.24 169 0.00022 12.7 0.0 1 1 7.8e-06 0.00041 11.9 0.0 7 39 156 188 152 241 0.79 # 24979 # 26013 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_28 - 612 TrwB_AAD_bind PF10412.4 386 6.5e-23 72.8 0.0 1 1 2e-24 1e-22 72.2 0.0 165 380 331 548 300 552 0.86 # 23141 # 24976 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_21 - 260 Sigma54_activ_2 PF14532.1 138 0.00021 13.4 0.0 1 1 6.3e-06 0.00033 12.7 0.0 9 64 87 144 84 229 0.70 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_28 - 612 T4SS-DNA_transf PF02534.9 469 8.7e-148 484.6 0.0 1 1 2.1e-149 1.1e-147 484.3 0.0 2 462 102 572 101 580 0.98 # 23141 # 24976 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 221 ArgK PF03308.11 267 0.00029 11.6 0.1 1 2 1.6e-05 0.00083 10.1 0.1 37 66 11 40 3 45 0.88 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 ArgK PF03308.11 267 0.00029 11.6 0.1 2 2 0.071 3.7 -1.8 0.0 154 174 88 107 63 144 0.54 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_7 - 221 GTP_EFTU PF00009.22 188 1.2e-07 23.3 0.1 1 1 2.6e-09 1.4e-07 23.1 0.1 15 139 15 153 6 211 0.72 # 3242 # 3904 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_24 - 165 Nup35_RRM PF05172.8 101 0.00054 11.7 0.0 1 1 1.6e-05 0.00083 11.1 0.0 28 73 94 137 84 144 0.86 # 21447 # 21941 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_21 - 260 AAA_24 PF13479.1 213 0.00069 11.2 0.1 1 1 3e-05 0.0016 10.0 0.1 5 23 103 121 99 127 0.85 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_41 - 170 TIGR00922 TIGR00922 172 3.7e-08 25.1 0.0 1 1 1.5e-09 8e-08 24.0 0.0 55 110 51 106 28 143 0.86 # 35321 # 35830 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.420 1_21 - 260 NACHT PF05729.7 166 6.6e-05 14.6 0.0 1 1 2.1e-06 0.00011 13.9 0.0 3 49 104 151 102 200 0.81 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_25 PF13481.1 194 3.7e-07 21.7 0.1 1 1 4.4e-08 1.2e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_29 - 345 AAA_25 PF13481.1 194 0.00016 13.1 0.0 1 1 9.6e-06 0.00025 12.5 0.0 21 52 152 183 137 226 0.87 # 24979 # 26013 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_21 - 260 AAA_28 PF13521.1 163 0.00013 13.9 0.0 1 1 5e-06 0.00026 13.0 0.0 1 49 103 156 103 171 0.73 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_21 - 260 AAA_5 PF07728.9 139 9.5e-06 17.4 0.0 1 1 4.6e-07 2.4e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 16277 # 17056 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1f19b93b-3ca0-4d7d-ac09-ada5dd1bf6fb # Target file: checkm_output/bins/pm1132/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1132/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1f19b93b-3ca0-4d7d-ac09-ada5dd1bf6fb checkm_output/bins/pm1132/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:38 2020 # [ok]