# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_37 - 234 UPF0020 PF01170.13 180 2.1e-06 19.6 0.0 1 2 0.0001 0.0031 9.3 0.0 103 120 17 34 5 80 0.83 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 234 UPF0020 PF01170.13 180 2.1e-06 19.6 0.0 2 2 0.00019 0.0056 8.4 0.0 28 51 170 193 165 227 0.75 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_24 - 676 UPF0020 PF01170.13 180 0.00014 13.6 0.1 1 2 0.00022 0.0065 8.2 0.1 31 45 209 223 201 230 0.88 # 18025 # 20052 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 676 UPF0020 PF01170.13 180 0.00014 13.6 0.1 2 2 0.01 0.31 2.7 0.0 106 125 292 311 272 318 0.79 # 18025 # 20052 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_30 - 402 MipZ PF09140.6 261 5.3e-07 21.1 0.4 1 2 3.3e-05 0.002 9.4 0.1 1 50 110 164 110 192 0.75 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 402 MipZ PF09140.6 261 5.3e-07 21.1 0.4 2 2 2.9e-05 0.0018 9.6 0.0 90 135 237 282 217 287 0.85 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_6 - 565 3HCDH_N PF02737.13 180 0.0013 10.6 5.9 1 2 0.0047 0.28 2.9 2.4 1 30 99 128 99 134 0.93 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 3HCDH_N PF02737.13 180 0.0013 10.6 5.9 2 2 8.3e-05 0.005 8.7 0.1 2 38 272 308 271 348 0.71 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 1.5e-08 26.0 2.7 1 3 2.6e-10 1.5e-08 26.0 2.7 2 186 100 278 99 294 0.72 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 1.5e-08 26.0 2.7 2 3 0.037 2.2 -0.9 0.0 3 31 273 301 271 318 0.85 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 GIDA PF01134.17 392 1.5e-08 26.0 2.7 3 3 0.018 1.1 0.1 0.1 349 385 393 429 387 433 0.77 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_2 PF07992.9 201 4.3e-44 142.9 0.0 1 1 3.3e-45 2e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 1086 DEAD_2 PF06733.10 174 0.00049 11.7 0.2 1 1 2.2e-05 0.0013 10.3 0.0 122 156 412 444 402 454 0.86 # 13454 # 16711 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_6 - 565 DFP PF04127.10 185 0.00032 12.5 2.1 1 2 0.00039 0.024 6.4 0.4 28 51 105 128 99 156 0.83 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DFP PF04127.10 185 0.00032 12.5 2.1 2 2 0.0011 0.067 5.0 0.1 32 53 281 302 276 337 0.73 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 237 AAA_15 PF13175.1 415 3.3e-09 28.4 0.0 1 1 7.2e-11 4.3e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_6 - 565 NAD_binding_7 PF13241.1 103 1.3e-07 24.0 1.1 1 2 5.4e-05 0.0032 9.9 0.2 9 38 99 128 96 184 0.89 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_7 PF13241.1 103 1.3e-07 24.0 1.1 2 2 9.8e-06 0.00059 12.3 0.1 8 47 270 315 264 381 0.73 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_37 - 234 N6_N4_Mtase PF01555.13 231 6.9e-33 106.2 0.0 1 2 6.8e-13 4.1e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 234 N6_N4_Mtase PF01555.13 231 6.9e-33 106.2 0.0 2 2 2e-23 1.2e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_10 - 237 AAA_21 PF13304.1 303 7.8e-06 18.2 0.0 1 1 2.3e-07 1.4e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_30 - 402 ArsA_ATPase PF02374.10 305 8.2e-06 17.2 0.0 1 1 3e-07 1.8e-05 16.0 0.0 4 136 113 255 110 257 0.75 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_6 - 565 NAD_binding_8 PF13450.1 68 2.1e-05 16.7 1.2 1 2 3.5e-07 2.1e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_8 PF13450.1 68 2.1e-05 16.7 1.2 2 2 0.043 2.6 0.4 0.2 1 25 274 298 274 302 0.81 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 F420_oxidored PF03807.12 96 0.0017 11.0 2.8 1 2 0.0023 0.14 4.9 1.2 2 31 100 126 99 131 0.87 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 F420_oxidored PF03807.12 96 0.0017 11.0 2.8 2 2 0.0075 0.45 3.2 0.0 1 34 271 300 271 319 0.87 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 237 SMC_N PF02463.14 220 1.6e-10 32.7 0.0 1 1 3.9e-12 2.3e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_30 - 402 VirC1 PF07015.6 231 8.8e-05 13.8 0.0 1 3 0.082 4.9 -1.7 0.0 71 86 57 72 49 82 0.87 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 402 VirC1 PF07015.6 231 8.8e-05 13.8 0.0 2 3 0.015 0.89 0.7 0.0 4 26 112 134 110 141 0.83 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 402 VirC1 PF07015.6 231 8.8e-05 13.8 0.0 3 3 3.1e-05 0.0019 9.5 0.0 82 136 244 298 221 316 0.86 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 402 Fer4_NifH PF00142.13 273 6.2e-06 17.7 0.0 1 1 2e-07 1.2e-05 16.7 0.0 7 72 117 187 112 198 0.80 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_10 - 237 AAA_23 PF13476.1 202 9.6e-12 37.8 0.0 1 1 1.6e-13 9.6e-12 37.8 0.0 1 53 6 58 6 202 0.88 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_30 - 402 CbiA PF01656.18 195 5.2e-24 76.9 0.1 1 1 1.9e-25 1.1e-23 75.8 0.0 1 148 112 299 112 346 0.76 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_56 - 655 KaiC PF06745.8 227 0.00012 13.4 0.0 1 1 4e-06 0.00024 12.4 0.0 18 53 256 291 252 293 0.93 # 42175 # 44139 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_6 - 565 HI0933_like PF03486.9 409 1.2e-08 26.0 3.8 1 2 1.2e-06 7.2e-05 13.5 2.5 2 33 99 130 98 138 0.91 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 HI0933_like PF03486.9 409 1.2e-08 26.0 3.8 2 2 6.1e-06 0.00036 11.2 0.0 82 164 284 366 275 385 0.82 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 237 AAA_29 PF13555.1 62 3.3e-08 25.2 0.0 1 1 9.2e-10 5.5e-08 24.5 0.0 2 49 5 50 4 57 0.82 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_6 - 565 FAD_binding_2 PF00890.19 417 2.6e-06 18.6 4.7 1 3 4.3e-08 2.6e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 2.6e-06 18.6 4.7 2 3 0.046 2.8 -1.2 0.1 147 204 315 369 305 388 0.69 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 FAD_binding_2 PF00890.19 417 2.6e-06 18.6 4.7 3 3 0.066 3.9 -1.7 0.0 376 402 388 408 365 422 0.83 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_3 PF13738.1 203 6.1e-18 57.8 0.1 1 2 4.4e-14 2.7e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox_3 PF13738.1 203 6.1e-18 57.8 0.1 2 2 6.9e-07 4.1e-05 15.9 0.0 91 147 318 375 307 430 0.76 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 676 N6_Mtase PF02384.11 311 8.3e-53 171.6 0.0 1 1 2.1e-54 1.3e-52 171.0 0.0 5 275 155 460 152 471 0.84 # 18025 # 20052 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_56 - 655 TraG-D_C PF12696.2 128 3e-09 29.0 0.0 1 1 8.3e-11 5e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 42175 # 44139 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_30 - 402 AAA_31 PF13614.1 157 8.7e-08 24.4 0.3 1 2 2.8e-05 0.0017 10.5 0.0 2 71 111 183 110 211 0.76 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 402 AAA_31 PF13614.1 157 8.7e-08 24.4 0.3 2 2 1.6e-05 0.00098 11.3 0.1 110 148 238 275 233 280 0.89 # 22284 # 23489 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_37 - 234 Methyltransf_26 PF13659.1 117 1.6e-11 36.5 0.2 1 2 6.4e-07 1.9e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 234 Methyltransf_26 PF13659.1 117 1.6e-11 36.5 0.2 2 2 3.9e-07 1.2e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_24 - 676 Methyltransf_26 PF13659.1 117 7.1e-09 28.0 0.0 1 1 5.6e-10 1.7e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 18025 # 20052 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_56 - 655 FtsK_SpoIIIE PF01580.13 205 0.0005 11.7 0.0 1 1 2.4e-05 0.0014 10.2 0.0 14 59 231 279 220 282 0.78 # 42175 # 44139 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_10 - 237 DUF2813 PF11398.3 373 3.7e-05 15.0 0.3 1 2 2e-06 0.00012 13.4 0.0 11 49 12 51 3 56 0.79 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_10 - 237 DUF2813 PF11398.3 373 3.7e-05 15.0 0.3 2 2 0.041 2.5 -0.8 0.1 94 148 126 180 118 226 0.52 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_6 - 565 ELFV_dehydrog PF00208.16 244 0.00042 12.1 0.6 1 2 0.00036 0.022 6.5 0.3 33 66 98 129 72 146 0.85 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 ELFV_dehydrog PF00208.16 244 0.00042 12.1 0.6 2 2 0.003 0.18 3.4 0.0 33 106 270 340 259 356 0.78 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 237 ABC_tran PF00005.22 137 5.5e-05 15.7 0.0 1 1 1.4e-06 8.5e-05 15.1 0.0 15 113 28 155 18 173 0.74 # 5832 # 6542 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_6 - 565 K_oxygenase PF13434.1 341 2.9e-06 18.5 0.0 1 3 0.0039 0.24 2.4 0.0 187 220 94 125 59 130 0.79 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 2.9e-06 18.5 0.0 2 3 2.5e-06 0.00015 12.9 0.0 132 231 218 308 202 340 0.80 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 K_oxygenase PF13434.1 341 2.9e-06 18.5 0.0 3 3 0.058 3.5 -1.5 0.0 133 160 347 369 315 377 0.67 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_37 - 234 Cons_hypoth95 PF03602.10 183 2.4e-06 19.2 0.0 1 2 0.00016 0.0098 7.4 0.0 113 169 19 77 12 86 0.70 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 234 Cons_hypoth95 PF03602.10 183 2.4e-06 19.2 0.0 2 2 3.1e-05 0.0019 9.8 0.0 20 60 149 188 142 225 0.73 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_56 - 655 AAA_10 PF12846.2 304 1.9e-15 49.2 0.0 1 1 4.5e-16 2.7e-14 45.4 0.0 3 293 259 539 257 547 0.78 # 42175 # 44139 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_6 - 565 FAD_oxidored PF12831.2 428 1.8e-06 19.4 3.6 1 1 2.9e-08 1.8e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 1.6e-09 29.2 11.3 1 3 1.4e-08 8.2e-07 20.3 0.7 1 38 99 134 99 190 0.84 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 1.6e-09 29.2 11.3 2 3 0.031 1.9 -0.6 0.1 3 31 273 301 271 307 0.75 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 DAO PF01266.19 358 1.6e-09 29.2 11.3 3 3 8.7e-07 5.2e-05 14.4 0.4 151 205 313 370 307 422 0.74 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 1086 ResIII PF04851.10 184 8.2e-15 47.3 1.7 1 2 4.8e-16 2.9e-14 45.5 0.1 3 183 295 498 293 499 0.78 # 13454 # 16711 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_22 - 1086 ResIII PF04851.10 184 8.2e-15 47.3 1.7 2 2 0.034 2 0.3 0.1 138 161 655 678 587 708 0.71 # 13454 # 16711 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_59 - 563 DUF3584 PF12128.3 1201 0.084 2.2 22.3 1 2 8e-05 0.0048 6.3 3.2 598 657 321 380 314 386 0.90 # 46121 # 47809 # -1 # ID=1_59;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_59 - 563 DUF3584 PF12128.3 1201 0.084 2.2 22.3 2 2 0.0028 0.17 1.2 11.4 608 673 400 465 395 472 0.82 # 46121 # 47809 # -1 # ID=1_59;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_6 - 565 NAD_binding_9 PF13454.1 156 1.7e-05 16.8 3.2 1 3 0.0081 0.49 2.3 0.1 1 41 101 135 101 162 0.81 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 1.7e-05 16.8 3.2 2 3 0.034 2 0.3 0.0 134 155 218 241 202 242 0.72 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 NAD_binding_9 PF13454.1 156 1.7e-05 16.8 3.2 3 3 5.4e-06 0.00032 12.7 0.1 112 155 321 366 310 367 0.84 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox PF00070.22 80 3.2e-20 64.6 5.6 1 2 1.4e-06 8.6e-05 15.2 1.5 1 31 99 129 99 131 0.96 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 Pyr_redox PF00070.22 80 3.2e-20 64.6 5.6 2 2 1.2e-17 7.2e-16 50.6 0.1 1 74 271 345 271 354 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_56 - 655 TrwB_AAD_bind PF10412.4 386 5.9e-07 20.5 0.0 1 2 4.9e-07 2.9e-05 14.9 0.0 14 57 256 300 247 313 0.85 # 42175 # 44139 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_56 - 655 TrwB_AAD_bind PF10412.4 386 5.9e-07 20.5 0.0 2 2 0.0015 0.089 3.5 0.0 296 368 520 593 426 607 0.84 # 42175 # 44139 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_6 - 565 AlaDh_PNT_C PF01262.16 168 1.5e-05 16.8 2.6 1 2 0.00051 0.031 6.0 0.8 15 50 92 127 89 130 0.90 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 565 AlaDh_PNT_C PF01262.16 168 1.5e-05 16.8 2.6 2 2 3e-05 0.0018 10.0 0.0 16 52 265 301 257 337 0.89 # 2771 # 4465 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_22 - 1086 UvrD-helicase PF00580.16 315 3e-05 15.6 1.3 1 1 1.2e-06 7.4e-05 14.3 0.2 20 271 324 782 308 794 0.68 # 13454 # 16711 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_37 - 234 Methyltransf_15 PF09445.5 164 0.00045 12.0 0.0 1 2 0.023 1.4 0.6 0.0 53 80 4 30 2 38 0.91 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 234 Methyltransf_15 PF09445.5 164 0.00045 12.0 0.0 2 2 7e-05 0.0042 8.8 0.0 3 30 173 200 171 213 0.90 # 29415 # 30116 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_22 - 1086 SNF2_N PF00176.18 299 0.00014 12.9 0.2 1 1 5.3e-06 0.00032 11.7 0.2 1 159 299 459 299 469 0.71 # 13454 # 16711 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c41959b5-5a56-4084-b9fb-fd18fb7ffd28 # Target file: checkm_output/bins/pm1124/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1124/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c41959b5-5a56-4084-b9fb-fd18fb7ffd28 checkm_output/bins/pm1124/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:34 2020 # [ok]