# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_135 - 330 ATP_bind_3 PF01171.15 182 0.00018 14.7 0.0 1 2 4.3e-05 0.0074 9.4 0.0 1 59 52 110 52 129 0.78 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 1_135 - 330 ATP_bind_3 PF01171.15 182 0.00018 14.7 0.0 2 2 0.0042 0.72 3.0 0.0 134 161 232 260 206 262 0.73 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 2_16 - 347 Seryl_tRNA_N PF02403.17 108 0.044 7.5 46.3 1 5 0.019 3.2 1.5 8.8 39 98 89 152 77 158 0.72 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_16 - 347 Seryl_tRNA_N PF02403.17 108 0.044 7.5 46.3 2 5 0.00084 0.14 5.9 3.1 50 100 146 196 143 199 0.89 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_16 - 347 Seryl_tRNA_N PF02403.17 108 0.044 7.5 46.3 3 5 2.6e-06 0.00044 13.9 12.2 19 100 216 294 201 297 0.85 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_16 - 347 Seryl_tRNA_N PF02403.17 108 0.044 7.5 46.3 4 5 0.00031 0.052 7.3 2.1 62 105 284 327 282 330 0.90 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_16 - 347 Seryl_tRNA_N PF02403.17 108 0.044 7.5 46.3 5 5 0.0059 1 3.1 1.6 82 105 304 327 296 345 0.51 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_91 - 262 MipZ PF09140.6 261 3.1e-10 33.2 0.0 1 2 6.6e-10 1.1e-07 24.8 0.0 2 52 4 55 3 81 0.83 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_91 - 262 MipZ PF09140.6 261 3.1e-10 33.2 0.0 2 2 0.00031 0.054 6.2 0.0 89 122 117 150 89 166 0.74 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_38 - 176 SSB PF00436.20 104 2.1e-41 133.7 0.3 1 1 1.5e-43 2.6e-41 133.4 0.3 1 104 5 109 5 109 0.99 # 30024 # 30551 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.544 2_14 - 504 UvrD_C_2 PF13538.1 104 1.3e-10 35.0 0.0 1 1 3.5e-12 6e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_68 - 622 DUF87 PF01935.12 229 1.3e-08 28.6 0.1 1 1 3.3e-10 2.8e-08 27.5 0.1 24 63 173 211 168 379 0.87 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_52 - 816 DUF87 PF01935.12 229 4.6e-08 26.8 0.2 1 1 1.1e-09 9.7e-08 25.7 0.2 24 167 452 591 432 654 0.69 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_14 - 504 AAA_22 PF13401.1 131 5.6e-05 17.0 0.0 1 2 8e-05 0.0046 10.8 0.0 8 68 23 92 17 122 0.63 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 AAA_22 PF13401.1 131 5.6e-05 17.0 0.0 2 2 0.015 0.85 3.4 0.0 82 124 189 225 164 229 0.77 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_40 - 323 AAA_22 PF13401.1 131 0.00021 15.1 0.0 1 1 7.8e-06 0.00044 14.1 0.0 5 54 62 103 56 164 0.76 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 622 AAA_22 PF13401.1 131 0.00022 15.1 0.0 1 1 1.2e-05 0.00071 13.4 0.0 3 68 171 231 166 287 0.83 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_21 - 542 DNA_methylase PF00145.12 335 1.1e-28 94.0 0.0 1 1 6.3e-30 5.4e-28 91.7 0.0 3 333 126 441 124 443 0.77 # 17007 # 18632 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_80 - 476 DNA_methylase PF00145.12 335 1.8e-10 34.1 0.0 1 2 4.1e-11 3.5e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 69744 # 71171 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 476 DNA_methylase PF00145.12 335 1.8e-10 34.1 0.0 2 2 0.011 0.95 2.1 0.0 290 330 407 448 343 452 0.74 # 69744 # 71171 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_40 - 323 AAA_3 PF07726.6 131 0.00012 15.4 0.0 1 1 1.1e-06 0.00019 14.7 0.0 3 114 65 188 63 212 0.80 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_30 - 295 N6_N4_Mtase PF01555.13 231 6.8e-09 29.2 0.1 1 2 1.7e-06 0.00029 14.0 0.0 180 223 28 72 4 76 0.84 # 21760 # 22644 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_30 - 295 N6_N4_Mtase PF01555.13 231 6.8e-09 29.2 0.1 2 2 3.5e-06 0.0006 13.0 0.1 2 172 90 267 89 283 0.72 # 21760 # 22644 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_40 - 323 AAA_17 PF13207.1 121 4.3e-05 18.0 0.0 1 1 5.5e-07 9.5e-05 16.9 0.0 3 27 65 89 64 166 0.90 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 622 MobB PF03205.9 140 0.00092 12.6 0.0 1 1 1.7e-05 0.003 10.9 0.0 4 34 176 206 175 214 0.90 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_91 - 262 ArsA_ATPase PF02374.10 305 9.8e-06 18.4 0.0 1 2 3e-07 5.2e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_91 - 262 ArsA_ATPase PF02374.10 305 9.8e-06 18.4 0.0 2 2 0.029 5 -0.3 0.0 124 136 124 136 106 143 0.79 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_14 - 504 PhoH PF02562.11 205 4.4e-06 19.7 0.2 1 2 0.0013 0.23 4.3 0.0 22 45 22 45 4 61 0.78 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 PhoH PF02562.11 205 4.4e-06 19.7 0.2 2 2 7.5e-06 0.0013 11.7 0.0 122 168 196 240 193 255 0.83 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_40 - 323 T2SE PF00437.15 272 6e-05 15.7 0.0 1 1 1.6e-06 0.00014 14.5 0.0 105 148 40 81 9 100 0.77 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 622 T2SE PF00437.15 272 0.00032 13.3 0.0 1 1 5.9e-06 0.0005 12.6 0.0 116 162 163 206 124 227 0.78 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_135 - 330 TIGR02432 TIGR02432 189 5.2e-05 16.6 0.1 1 2 8.9e-06 0.0015 11.8 0.0 1 58 52 109 52 119 0.85 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 1_135 - 330 TIGR02432 TIGR02432 189 5.2e-05 16.6 0.1 2 2 0.0072 1.2 2.3 0.0 140 165 235 260 207 262 0.76 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 1_40 - 323 Arch_ATPase PF01637.13 234 7.2e-05 16.2 0.0 1 1 7e-07 0.00012 15.5 0.0 4 44 45 85 43 94 0.91 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_40 - 323 AAA_16 PF13191.1 185 4.1e-05 17.3 0.8 1 1 2.2e-06 0.00012 15.7 0.0 7 48 47 85 42 102 0.79 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_52 - 816 AAA_16 PF13191.1 185 5.1e-05 17.0 0.2 1 1 4.8e-06 0.00027 14.6 0.2 20 62 447 489 439 648 0.64 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_76 - 206 AAA_16 PF13191.1 185 7.3e-05 16.5 0.1 1 1 1.9e-06 0.00011 15.9 0.1 27 68 11 54 3 168 0.79 # 67953 # 68570 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 2_16 - 347 AAA_13 PF13166.1 712 0.011 7.7 36.6 1 2 0.0019 0.33 2.9 28.3 283 457 85 259 71 272 0.58 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_16 - 347 AAA_13 PF13166.1 712 0.011 7.7 36.6 2 2 2.3e-05 0.004 9.2 23.2 287 474 160 339 154 345 0.78 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_91 - 262 CbiA PF01656.18 195 2e-30 99.3 0.0 1 1 3e-32 2.6e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_52 - 816 CbiA PF01656.18 195 0.00066 12.8 0.0 1 1 1.7e-05 0.0014 11.7 0.0 3 49 455 517 454 593 0.60 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_14 - 504 AAA_14 PF13173.1 128 2.8e-05 17.7 1.3 1 2 2.5e-05 0.0043 10.6 0.1 11 46 28 62 18 156 0.76 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 AAA_14 PF13173.1 128 2.8e-05 17.7 1.3 2 2 0.0011 0.19 5.3 0.0 51 99 176 227 127 241 0.73 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_40 - 323 AAA_29 PF13555.1 62 0.002 11.3 1.0 1 1 2.7e-05 0.0046 10.2 0.3 21 38 59 76 54 79 0.86 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_40 - 323 AAA PF00004.24 132 0.00059 13.7 0.1 1 1 7.4e-06 0.0013 12.6 0.1 2 33 65 96 64 149 0.83 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_14 - 504 UvrD_C PF13361.1 351 1.6e-10 34.6 0.0 1 1 1.7e-12 2.9e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_135 - 330 PAPS_reduct PF01507.14 174 4.2e-12 39.9 0.4 1 2 0.024 2.1 1.8 0.0 2 17 53 68 52 92 0.77 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 1_135 - 330 PAPS_reduct PF01507.14 174 4.2e-12 39.9 0.4 2 2 6.9e-13 5.9e-11 36.1 0.1 58 172 154 279 145 281 0.85 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 1_17 - 818 PAPS_reduct PF01507.14 174 4.3e-05 17.0 0.0 1 1 2.1e-06 0.00018 15.0 0.0 3 151 69 256 67 261 0.69 # 12726 # 15179 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_88 - 212 N6_Mtase PF02384.11 311 6.3e-07 22.3 0.0 1 1 5.9e-09 1e-06 21.7 0.0 3 97 71 166 69 201 0.72 # 74354 # 74989 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_68 - 622 TraG-D_C PF12696.2 128 4.9e-15 49.2 0.0 1 1 1e-16 8.8e-15 48.4 0.0 1 124 471 595 471 599 0.83 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_52 - 816 TraG-D_C PF12696.2 128 1.5e-06 21.8 0.0 1 1 4e-08 3.4e-06 20.6 0.0 17 75 674 728 656 734 0.84 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_91 - 262 AAA_31 PF13614.1 157 2.2e-10 34.3 0.0 1 1 2.6e-12 4.5e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_38 - 176 AAA_33 PF13671.1 143 0.00097 12.7 0.0 1 1 8.6e-06 0.0015 12.1 0.0 26 102 33 104 23 109 0.75 # 30024 # 30551 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.544 2_14 - 504 AAA_30 PF13604.1 196 8.4e-08 25.7 0.1 1 2 9.2e-07 0.00016 15.0 0.0 19 80 20 81 11 109 0.77 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 AAA_30 PF13604.1 196 8.4e-08 25.7 0.1 2 2 0.00017 0.03 7.5 0.0 115 133 211 229 174 278 0.75 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_68 - 622 FtsK_SpoIIIE PF01580.13 205 1.5e-07 24.8 0.0 1 2 3.8e-08 2.2e-06 20.9 0.0 36 81 168 211 136 234 0.79 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_68 - 622 FtsK_SpoIIIE PF01580.13 205 1.5e-07 24.8 0.0 2 2 0.042 2.4 1.2 0.0 176 204 481 509 472 510 0.86 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_52 - 816 FtsK_SpoIIIE PF01580.13 205 1.4e-06 21.6 0.1 1 1 6.6e-08 3.8e-06 20.2 0.1 33 84 446 495 401 698 0.67 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_76 - 206 FtsK_SpoIIIE PF01580.13 205 0.0012 11.9 0.2 1 1 7.1e-05 0.004 10.3 0.0 34 53 4 23 1 28 0.83 # 67953 # 68570 # -1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.513 1_40 - 323 ABC_tran PF00005.22 137 0.0012 12.8 0.0 1 1 1.3e-05 0.0023 11.9 0.0 11 46 61 96 55 117 0.85 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 2_14 - 504 AAA_19 PF13245.1 76 2.7e-09 30.4 0.0 1 1 8.4e-11 7.2e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_40 - 323 AAA_19 PF13245.1 76 0.00026 14.4 0.1 1 1 7e-06 0.0006 13.3 0.1 10 35 61 86 51 112 0.76 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_52 - 816 AAA_10 PF12846.2 304 4.6e-59 193.9 0.1 1 1 9e-61 7.7e-59 193.2 0.1 1 296 451 729 451 738 0.93 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_68 - 622 AAA_10 PF12846.2 304 1.6e-18 60.8 0.2 1 1 5.3e-20 4.5e-18 59.3 0.2 2 299 173 549 172 553 0.71 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 2_14 - 504 ResIII PF04851.10 184 1.8e-06 21.5 0.0 1 1 5.5e-08 4.7e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_68 - 622 ResIII PF04851.10 184 0.00018 15.0 0.0 1 1 4.2e-06 0.00036 14.0 0.0 23 57 170 206 129 214 0.74 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 2_16 - 347 DUF3584 PF12128.3 1201 0.028 5.3 51.1 1 2 0.0051 0.87 0.4 32.3 377 534 86 242 42 246 0.65 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_16 - 347 DUF3584 PF12128.3 1201 0.028 5.3 51.1 2 2 2e-05 0.0034 8.3 20.6 613 709 225 327 220 345 0.80 # 14177 # 15217 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_14 - 504 Viral_helicase1 PF01443.13 234 1.6e-10 34.6 0.0 1 3 1.4e-05 0.0024 11.0 0.0 2 49 23 73 22 87 0.67 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 Viral_helicase1 PF01443.13 234 1.6e-10 34.6 0.0 2 3 1.8e-05 0.0031 10.7 0.0 56 105 188 234 146 256 0.78 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 Viral_helicase1 PF01443.13 234 1.6e-10 34.6 0.0 3 3 5.2e-05 0.0089 9.2 0.0 176 227 404 462 344 467 0.75 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_68 - 622 DEAD PF00270.24 169 4e-05 16.8 0.0 1 1 4.4e-07 7.5e-05 15.9 0.0 13 52 171 208 159 231 0.85 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_68 - 622 DUF853 PF05872.7 504 1.5e-06 20.5 0.0 1 1 1.4e-08 2.3e-06 19.8 0.0 7 60 158 211 153 225 0.93 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_68 - 622 TrwB_AAD_bind PF10412.4 386 3.4e-19 62.3 0.0 1 2 8.9e-13 7.6e-11 34.8 0.0 10 54 167 211 161 313 0.70 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_68 - 622 TrwB_AAD_bind PF10412.4 386 3.4e-19 62.3 0.0 2 2 6.9e-10 5.9e-08 25.3 0.0 242 377 469 609 445 616 0.82 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_52 - 816 TrwB_AAD_bind PF10412.4 386 3.8e-08 25.9 0.0 1 2 1.5e-05 0.0013 11.1 0.0 6 72 442 517 438 520 0.85 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_52 - 816 TrwB_AAD_bind PF10412.4 386 3.8e-08 25.9 0.0 2 2 5.6e-06 0.00048 12.4 0.1 232 301 643 712 613 731 0.66 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_14 - 504 AAA_11 PF13086.1 236 4.9e-07 23.2 0.1 1 1 1.9e-08 3.2e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_52 - 816 Guanylate_kin PF00625.16 183 0.00028 14.0 0.1 1 3 0.0039 0.66 3.0 0.0 3 26 452 475 450 503 0.86 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_52 - 816 Guanylate_kin PF00625.16 183 0.00028 14.0 0.1 2 3 0.012 2 1.4 0.0 76 115 597 637 591 703 0.82 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_52 - 816 Guanylate_kin PF00625.16 183 0.00028 14.0 0.1 3 3 0.001 0.18 4.9 0.0 75 131 714 770 697 777 0.87 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_68 - 622 T4SS-DNA_transf PF02534.9 469 4.4e-05 15.8 0.0 1 2 5.6e-07 9.5e-05 14.7 0.0 37 114 168 248 125 346 0.72 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_68 - 622 T4SS-DNA_transf PF02534.9 469 4.4e-05 15.8 0.0 2 2 0.097 17 -2.6 0.0 328 389 494 555 474 572 0.74 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_68 - 622 ArgK PF03308.11 267 0.00019 13.9 0.0 1 1 1.8e-06 0.00032 13.2 0.0 12 68 158 209 153 214 0.88 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_135 - 330 tRNA_Me_trans PF03054.11 356 0.00012 14.3 0.0 1 1 9.3e-07 0.00016 13.9 0.0 2 71 52 122 51 144 0.74 # 103740 # 104729 # 1 # ID=1_135;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 2_14 - 504 UvrD-helicase PF00580.16 315 9.4e-17 54.9 3.9 1 2 2.9e-06 0.00049 13.1 0.1 2 38 8 44 7 64 0.81 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_14 - 504 UvrD-helicase PF00580.16 315 9.4e-17 54.9 3.9 2 2 3.4e-15 5.8e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 12379 # 13890 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_52 - 816 AAA_25 PF13481.1 194 0.00059 12.9 0.0 1 1 2.5e-05 0.0014 11.6 0.0 36 86 454 494 447 532 0.82 # 42161 # 44608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_91 - 262 AAA_25 PF13481.1 194 0.00067 12.7 0.0 1 1 1.8e-05 0.001 12.1 0.0 42 91 12 51 11 134 0.78 # 76548 # 77333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_68 - 622 AAA_25 PF13481.1 194 0.00067 12.7 0.0 1 1 3.7e-05 0.0021 11.1 0.0 20 137 159 265 145 272 0.78 # 58815 # 60680 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_40 - 323 AAA_5 PF07728.9 139 1.7e-18 60.4 0.0 1 1 1.6e-20 2.7e-18 59.7 0.0 2 125 64 188 63 197 0.94 # 31534 # 32502 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/570b47a9-f555-4d04-8e1f-9429e41dbbb1 # Target file: checkm_output/bins/pm1120/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1120/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/570b47a9-f555-4d04-8e1f-9429e41dbbb1 checkm_output/bins/pm1120/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:32 2020 # [ok]