# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 722 UPF0020 PF01170.13 180 5.9e-08 26.0 0.0 1 1 2.2e-09 1.1e-07 25.1 0.0 30 122 229 327 225 334 0.75 # 41675 # 43840 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_113 - 234 UPF0020 PF01170.13 180 5.5e-06 19.5 0.0 1 2 0.00016 0.0081 9.2 0.0 103 120 17 34 5 75 0.83 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 234 UPF0020 PF01170.13 180 5.5e-06 19.5 0.0 2 2 0.00028 0.014 8.4 0.0 28 51 170 193 165 227 0.75 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_128 - 676 UPF0020 PF01170.13 180 0.00036 13.6 0.1 1 2 0.00032 0.016 8.2 0.1 31 45 209 223 201 230 0.88 # 122524 # 124551 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_128 - 676 UPF0020 PF01170.13 180 0.00036 13.6 0.1 2 2 0.015 0.78 2.7 0.0 106 125 292 311 272 318 0.79 # 122524 # 124551 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_121 - 402 MipZ PF09140.6 261 1.3e-06 21.1 0.4 1 2 3.3e-05 0.005 9.4 0.1 1 50 110 164 110 192 0.75 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_121 - 402 MipZ PF09140.6 261 1.3e-06 21.1 0.4 2 2 2.9e-05 0.0044 9.6 0.0 90 135 237 282 217 287 0.85 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_104 - 171 SSB PF00436.20 104 1.1e-42 137.7 0.3 1 1 8.7e-45 1.3e-42 137.4 0.3 1 103 6 112 6 113 0.97 # 99421 # 99933 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_54 - 1753 UvrD_C_2 PF13538.1 104 1.1e-07 25.4 0.2 1 1 4.8e-09 7.3e-07 22.8 0.0 3 102 1339 1442 1335 1444 0.76 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_126 - 1086 DEAD_2 PF06733.10 174 0.00096 12.1 0.1 1 1 2.2e-05 0.0033 10.3 0.0 122 156 412 444 402 454 0.86 # 117911 # 121168 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_75 - 880 DUF87 PF01935.12 229 7e-06 19.5 0.0 1 2 0.056 8.5 -0.4 0.2 113 171 312 362 304 396 0.60 # 77953 # 80592 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_75 - 880 DUF87 PF01935.12 229 7e-06 19.5 0.0 2 2 3e-07 4.6e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 77953 # 80592 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_54 - 1753 AAA_22 PF13401.1 131 0.00038 14.1 0.0 1 2 0.0058 0.88 3.2 0.0 89 121 504 535 469 537 0.72 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_54 - 1753 AAA_22 PF13401.1 131 0.00038 14.1 0.0 2 2 0.0004 0.06 7.0 0.0 3 28 985 1010 982 1063 0.79 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_142 - 576 AAA_15 PF13175.1 415 8.8e-12 38.2 0.0 1 2 1.2e-07 1.8e-05 17.4 0.0 1 45 4 47 4 93 0.87 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_142 - 576 AAA_15 PF13175.1 415 8.8e-12 38.2 0.0 2 2 4.2e-08 6.4e-06 18.9 0.0 318 414 232 320 176 321 0.80 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_113 - 234 N6_N4_Mtase PF01555.13 231 8.4e-33 107.2 0.0 1 2 3.3e-13 4.9e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 234 N6_N4_Mtase PF01555.13 231 8.4e-33 107.2 0.0 2 2 2e-23 3e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_142 - 576 AAA_21 PF13304.1 303 2.1e-22 73.9 0.0 1 1 3.9e-24 3e-22 73.4 0.0 1 302 26 321 26 322 0.91 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_139 - 935 AAA_21 PF13304.1 303 1.6e-06 21.7 0.6 1 1 5.9e-08 4.5e-06 20.3 0.1 219 302 734 858 608 859 0.65 # 131469 # 134273 # -1 # ID=1_139;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_121 - 402 ArsA_ATPase PF02374.10 305 2.1e-05 17.2 0.0 1 1 3e-07 4.6e-05 16.0 0.0 4 136 113 255 110 257 0.75 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_142 - 576 SMC_N PF02463.14 220 3.6e-12 39.4 0.0 1 2 2.6e-11 2e-09 30.5 0.0 2 55 4 55 3 64 0.89 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_142 - 576 SMC_N PF02463.14 220 3.6e-12 39.4 0.0 2 2 0.00049 0.037 6.7 0.0 161 205 278 324 256 336 0.84 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_139 - 935 SMC_N PF02463.14 220 1.3e-08 27.8 0.6 1 2 0.0029 0.22 4.2 0.0 20 42 324 346 318 364 0.85 # 131469 # 134273 # -1 # ID=1_139;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_139 - 935 SMC_N PF02463.14 220 1.3e-08 27.8 0.6 2 2 1.2e-08 9.1e-07 21.8 0.2 74 215 441 871 409 876 0.84 # 131469 # 134273 # -1 # ID=1_139;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_121 - 402 VirC1 PF07015.6 231 0.00022 13.8 0.0 1 3 0.082 13 -1.7 0.0 71 86 57 72 49 82 0.87 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_121 - 402 VirC1 PF07015.6 231 0.00022 13.8 0.0 2 3 0.015 2.3 0.7 0.0 4 26 112 134 110 141 0.83 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_121 - 402 VirC1 PF07015.6 231 0.00022 13.8 0.0 3 3 3.1e-05 0.0048 9.5 0.0 82 136 244 298 221 316 0.86 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_121 - 402 Fer4_NifH PF00142.13 273 1.6e-05 17.7 0.0 1 1 2e-07 3.1e-05 16.7 0.0 7 72 117 187 112 198 0.80 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_55 - 770 AAA_16 PF13191.1 185 2.9e-06 20.9 0.0 1 1 1.4e-07 2.1e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 60312 # 62621 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_142 - 576 AAA_23 PF13476.1 202 4.5e-13 43.5 0.0 1 1 8.2e-15 6.2e-13 43.0 0.0 2 104 7 99 6 222 0.76 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_139 - 935 AAA_23 PF13476.1 202 2.9e-06 21.2 3.6 1 1 3.8e-08 2.9e-06 21.2 3.6 10 195 319 578 315 584 0.69 # 131469 # 134273 # -1 # ID=1_139;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_121 - 402 CbiA PF01656.18 195 1.3e-23 76.9 0.1 1 1 1.9e-25 2.8e-23 75.8 0.0 1 148 112 299 112 346 0.76 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_142 - 576 AAA_29 PF13555.1 62 1.2e-07 24.8 0.0 1 1 1.5e-09 2.3e-07 23.8 0.0 23 55 25 56 4 60 0.73 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_41 - 722 N6_Mtase PF02384.11 311 3.1e-54 177.6 0.0 1 1 8.5e-56 4.3e-54 177.1 0.0 3 276 177 489 175 508 0.84 # 41675 # 43840 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_128 - 676 N6_Mtase PF02384.11 311 2.1e-52 171.6 0.0 1 1 6.3e-54 3.2e-52 171.0 0.0 5 275 155 460 152 471 0.84 # 122524 # 124551 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_92 - 278 N6_Mtase PF02384.11 311 5.3e-12 38.9 0.0 1 1 1.7e-13 8.5e-12 38.2 0.0 25 117 139 237 130 250 0.85 # 91882 # 92715 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 1_55 - 770 TraG-D_C PF12696.2 128 1e-19 64.2 0.0 1 1 1.6e-21 2.4e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 60312 # 62621 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_121 - 402 AAA_31 PF13614.1 157 2.2e-07 24.4 0.3 1 2 2.8e-05 0.0042 10.5 0.0 2 71 111 183 110 211 0.76 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_121 - 402 AAA_31 PF13614.1 157 2.2e-07 24.4 0.3 2 2 1.6e-05 0.0025 11.3 0.1 110 148 238 275 233 280 0.89 # 113323 # 114528 # 1 # ID=1_121;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_113 - 234 Methyltransf_26 PF13659.1 117 4.1e-11 36.5 0.2 1 2 1.6e-06 4.9e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 234 Methyltransf_26 PF13659.1 117 4.1e-11 36.5 0.2 2 2 9.8e-07 3e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_41 - 722 Methyltransf_26 PF13659.1 117 1.3e-10 34.8 0.0 1 1 9.8e-12 3e-10 33.7 0.0 5 86 232 327 229 390 0.77 # 41675 # 43840 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_128 - 676 Methyltransf_26 PF13659.1 117 1.9e-08 27.9 0.0 1 1 1.4e-09 4.3e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 122524 # 124551 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_92 - 278 Methyltransf_26 PF13659.1 117 0.00013 15.5 0.1 1 1 9.5e-06 0.00029 14.4 0.1 3 66 171 239 170 267 0.81 # 91882 # 92715 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 1_23 - 260 Methyltransf_26 PF13659.1 117 0.00061 13.3 1.6 1 1 2.4e-05 0.00074 13.1 0.2 2 75 114 180 113 229 0.85 # 25547 # 26326 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_23 - 260 FmrO PF07091.6 251 1.7e-69 227.1 0.0 1 1 2.5e-71 1.9e-69 226.9 0.0 2 251 15 255 14 255 0.97 # 25547 # 26326 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.673 1_24 - 142 FmrO PF07091.6 251 4.6e-09 29.1 0.1 1 1 7.9e-11 6e-09 28.7 0.1 20 72 84 134 77 139 0.86 # 26319 # 26744 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 1_54 - 1753 AAA_30 PF13604.1 196 1.2e-44 145.7 5.8 1 2 1.1e-06 0.00016 14.7 0.8 9 126 423 535 421 560 0.85 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_54 - 1753 AAA_30 PF13604.1 196 1.2e-44 145.7 5.8 2 2 1.4e-42 2.1e-40 131.9 0.4 2 186 970 1157 969 1161 0.94 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_75 - 880 FtsK_SpoIIIE PF01580.13 205 0.00017 14.6 0.0 1 1 2.7e-06 0.00041 13.3 0.0 39 63 480 506 466 508 0.85 # 77953 # 80592 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_142 - 576 DUF2813 PF11398.3 373 1.3e-05 17.9 0.0 1 1 1.6e-07 2.4e-05 17.0 0.0 3 65 4 66 2 100 0.87 # 136285 # 138012 # -1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_113 - 234 Cons_hypoth95 PF03602.10 183 4.6e-06 19.6 0.0 1 2 0.00025 0.019 7.8 0.0 113 170 19 78 12 86 0.73 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 234 Cons_hypoth95 PF03602.10 183 4.6e-06 19.6 0.0 2 2 6.3e-05 0.0048 9.8 0.0 20 60 149 188 142 225 0.73 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_41 - 722 Cons_hypoth95 PF03602.10 183 0.00043 13.2 0.0 1 1 2.4e-05 0.0018 11.1 0.0 72 152 268 347 263 360 0.82 # 41675 # 43840 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_41 - 722 Eco57I PF07669.6 106 3.9e-05 17.5 0.0 1 1 5e-06 0.00076 13.4 0.0 2 103 311 441 310 444 0.77 # 41675 # 43840 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_54 - 1753 AAA_19 PF13245.1 76 3.4e-06 20.3 0.5 1 1 4.5e-08 3.4e-06 20.3 0.5 8 74 983 1046 975 1049 0.71 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_141 - 472 AAA_19 PF13245.1 76 1.5e-05 18.2 0.3 1 2 3.4e-06 0.00026 14.3 0.3 11 62 11 55 3 74 0.76 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_141 - 472 AAA_19 PF13245.1 76 1.5e-05 18.2 0.3 2 2 0.067 5.1 0.5 0.0 42 57 253 268 243 291 0.77 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_75 - 880 AAA_10 PF12846.2 304 1.2e-45 149.7 0.0 1 1 2.5e-47 1.9e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 77953 # 80592 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_55 - 770 AAA_10 PF12846.2 304 3.3e-09 30.1 0.0 1 1 1.2e-08 9.4e-07 22.0 0.0 3 296 187 494 186 499 0.63 # 60312 # 62621 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_144 - 191 NodS PF05401.6 201 0.00079 12.3 0.0 1 2 0.055 8.3 -0.8 0.0 42 154 34 59 20 67 0.62 # 138703 # 139275 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.672 1_144 - 191 NodS PF05401.6 201 0.00079 12.3 0.0 2 2 1.9e-05 0.0028 10.5 0.0 26 86 100 160 86 173 0.82 # 138703 # 139275 # 1 # ID=1_144;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.672 1_126 - 1086 ResIII PF04851.10 184 9.5e-15 48.4 1.1 1 2 5.5e-16 4.2e-14 46.3 0.1 3 183 295 498 293 499 0.78 # 117911 # 121168 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_126 - 1086 ResIII PF04851.10 184 9.5e-15 48.4 1.1 2 2 0.077 5.9 0.1 0.1 138 162 655 679 589 711 0.71 # 117911 # 121168 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_141 - 472 ResIII PF04851.10 184 0.0013 12.1 0.0 1 1 3e-05 0.0023 11.3 0.0 26 70 10 55 4 72 0.78 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_141 - 472 Viral_helicase1 PF01443.13 234 8.5e-12 38.5 0.0 1 3 1.3e-05 0.0019 11.2 0.0 5 38 16 54 12 78 0.65 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_141 - 472 Viral_helicase1 PF01443.13 234 8.5e-12 38.5 0.0 2 3 2.6e-08 3.9e-06 20.0 0.0 62 123 121 179 113 196 0.85 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_141 - 472 Viral_helicase1 PF01443.13 234 8.5e-12 38.5 0.0 3 3 0.003 0.45 3.4 0.0 215 233 445 463 425 464 0.81 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_55 - 770 TrwB_AAD_bind PF10412.4 386 1.5e-148 488.0 0.0 1 1 2.4e-150 1.9e-148 487.7 0.0 2 386 172 561 171 561 0.99 # 60312 # 62621 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_75 - 880 TrwB_AAD_bind PF10412.4 386 2.3e-05 16.6 0.2 1 1 8e-07 6.1e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 77953 # 80592 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_54 - 1753 AAA_11 PF13086.1 236 3.9e-06 20.1 0.1 1 3 9.3e-07 0.00014 15.0 0.0 2 72 970 1037 969 1064 0.82 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_54 - 1753 AAA_11 PF13086.1 236 3.9e-06 20.1 0.1 2 3 0.044 6.7 -0.4 0.0 206 232 1083 1107 1043 1109 0.73 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_54 - 1753 AAA_11 PF13086.1 236 3.9e-06 20.1 0.1 3 3 0.033 5 0.1 0.0 3 34 1181 1211 1179 1330 0.69 # 55054 # 60312 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_55 - 770 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.6 0.0 1 2 0.08 12 -2.3 0.0 130 199 262 330 253 360 0.69 # 60312 # 62621 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_55 - 770 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.6 0.0 2 2 3.3e-10 5e-08 25.3 0.0 274 393 392 507 361 559 0.74 # 60312 # 62621 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_75 - 880 Pox_A32 PF04665.7 241 0.00011 15.0 0.0 1 1 1.5e-06 0.00023 14.0 0.0 6 40 474 508 470 523 0.82 # 77953 # 80592 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_141 - 472 UvrD-helicase PF00580.16 315 1.4e-12 41.0 0.0 1 2 6.5e-05 0.005 9.6 0.1 14 67 10 57 3 78 0.76 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_141 - 472 UvrD-helicase PF00580.16 315 1.4e-12 41.0 0.0 2 2 8.9e-11 6.8e-09 28.9 0.0 246 304 111 168 97 178 0.87 # 134873 # 136288 # -1 # ID=1_141;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_126 - 1086 UvrD-helicase PF00580.16 315 6.2e-05 15.9 0.5 1 1 2.8e-06 0.00021 14.1 0.0 20 271 324 782 309 794 0.70 # 117911 # 121168 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_113 - 234 Methyltransf_15 PF09445.5 164 0.0011 12.0 0.0 1 2 0.023 3.5 0.6 0.0 53 80 4 30 2 38 0.91 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 234 Methyltransf_15 PF09445.5 164 0.0011 12.0 0.0 2 2 7e-05 0.011 8.8 0.0 3 30 173 200 171 213 0.90 # 104785 # 105486 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_126 - 1086 SNF2_N PF00176.18 299 0.00037 12.8 0.1 1 1 5.2e-06 0.00079 11.7 0.1 1 159 299 459 299 469 0.71 # 117911 # 121168 # -1 # ID=1_126;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0c1bcc71-2562-4af9-9bc2-fbf855379092 # Target file: checkm_output/bins/pm1118/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1118/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0c1bcc71-2562-4af9-9bc2-fbf855379092 checkm_output/bins/pm1118/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:30 2020 # [ok]