# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 334 Mg_chelatase PF01078.16 207 0.00028 12.1 0.0 1 1 8.7e-06 0.00045 11.4 0.0 13 57 150 194 139 214 0.73 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 cobW PF02492.14 178 5e-05 14.8 0.0 1 1 1.5e-06 7.9e-05 14.1 0.0 3 44 162 200 160 225 0.80 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 IstB_IS21 PF01695.12 178 2.4e-05 15.8 0.0 1 1 9.4e-07 4.9e-05 14.8 0.0 43 79 155 190 128 206 0.82 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 234 3HCDH_N PF02737.13 180 0.011 7.3 9.4 1 2 0.00053 0.028 6.0 1.4 3 55 12 57 6 74 0.56 # 7401 # 8102 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_13 - 234 3HCDH_N PF02737.13 180 0.011 7.3 9.4 2 2 0.0013 0.07 4.7 0.7 45 80 142 177 113 210 0.63 # 7401 # 8102 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_50 - 178 SSB PF00436.20 104 1.2e-43 139.2 0.4 1 1 2.8e-45 1.5e-43 139.0 0.4 1 99 6 105 6 113 0.96 # 38650 # 39183 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.571 1_33 - 1069 UvrD_C_2 PF13538.1 104 8e-16 50.1 0.6 1 1 6.3e-17 3.3e-15 48.2 0.2 3 102 801 900 799 902 0.78 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 334 AAA_2 PF07724.9 171 4.8e-05 15.3 0.1 1 1 1.7e-06 8.9e-05 14.4 0.1 2 49 158 203 157 216 0.84 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_34 - 511 DUF87 PF01935.12 229 2.1e-10 32.8 0.0 1 1 1.2e-11 3.2e-10 32.1 0.0 12 81 118 181 109 252 0.77 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 DUF87 PF01935.12 229 1.9e-05 16.5 0.0 1 1 1.5e-06 4e-05 15.5 0.0 26 61 162 196 156 208 0.84 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 NB-ARC PF00931.17 287 0.00037 11.3 0.0 1 1 1.6e-05 0.00086 10.1 0.0 12 42 152 182 144 214 0.80 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 AAA_22 PF13401.1 131 6.6e-07 21.5 0.0 1 1 6.8e-08 1.8e-06 20.1 0.0 3 68 158 217 155 246 0.78 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_34 - 511 AAA_22 PF13401.1 131 0.00052 12.2 0.1 1 2 0.0014 0.037 6.2 0.0 6 26 128 148 123 171 0.83 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_34 - 511 AAA_22 PF13401.1 131 0.00052 12.2 0.1 2 2 0.029 0.76 1.9 0.0 82 101 346 368 310 385 0.76 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_12 - 858 AAA_17 PF13207.1 121 0.00048 13.0 0.8 1 2 0.0013 0.033 7.0 0.0 3 19 490 506 489 559 0.82 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 858 AAA_17 PF13207.1 121 0.00048 13.0 0.8 2 2 0.065 1.7 1.5 0.1 50 86 617 649 587 730 0.65 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_34 - 511 AAA_17 PF13207.1 121 0.00063 12.6 1.0 1 1 7.7e-05 0.002 11.0 1.0 4 49 131 201 129 311 0.60 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 MobB PF03205.9 140 3e-06 19.0 0.2 1 1 1.7e-07 8.7e-06 17.5 0.0 2 38 161 196 160 208 0.81 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_33 - 1069 PhoH PF02562.11 205 5.5e-10 30.8 2.2 1 2 5.7e-07 1.5e-05 16.3 0.3 5 40 482 518 479 531 0.82 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 1069 PhoH PF02562.11 205 5.5e-10 30.8 2.2 2 2 3.7e-06 9.6e-05 13.6 0.1 120 162 565 608 561 642 0.80 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 334 PhoH PF02562.11 205 1.2e-05 16.5 0.0 1 1 9.2e-07 2.4e-05 15.6 0.0 9 39 149 179 142 210 0.77 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 T2SE PF00437.15 272 2e-53 172.9 0.1 1 1 4.6e-55 2.4e-53 172.7 0.1 3 270 11 311 9 313 0.92 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 Zeta_toxin PF06414.7 201 1.5e-06 19.4 0.0 1 1 4.7e-08 2.5e-06 18.7 0.0 11 51 154 194 144 206 0.82 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 Arch_ATPase PF01637.13 234 1.8e-05 16.5 0.0 1 1 6.1e-07 3.2e-05 15.7 0.0 16 69 157 207 144 248 0.86 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 AAA_16 PF13191.1 185 2.4e-07 22.9 0.0 1 1 2.9e-08 5e-07 21.8 0.0 24 51 159 186 138 211 0.81 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 858 AAA_16 PF13191.1 185 6.7e-05 14.9 0.1 1 2 0.00021 0.0037 9.2 0.0 25 47 487 506 474 558 0.76 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 858 AAA_16 PF13191.1 185 6.7e-05 14.9 0.1 2 2 0.03 0.53 2.2 0.0 118 170 658 712 621 719 0.77 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_34 - 511 AAA_16 PF13191.1 185 0.00012 14.1 0.0 1 1 2.8e-05 0.00049 12.1 0.0 26 174 128 370 120 379 0.72 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_34 - 511 AAA_23 PF13476.1 202 0.00015 14.1 1.0 1 1 4.1e-06 0.00021 13.6 1.0 23 47 130 156 127 374 0.76 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 AAA_18 PF13238.1 129 5.3e-05 15.5 0.0 1 1 4.7e-06 0.00012 14.4 0.0 1 28 162 194 162 216 0.76 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_34 - 511 AAA_18 PF13238.1 129 0.00027 13.3 0.0 1 1 2.3e-05 0.00059 12.1 0.0 3 42 131 184 130 257 0.67 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_37 - 239 CbiA PF01656.18 195 9.1e-08 23.7 0.9 1 1 3.9e-07 2e-05 16.0 0.9 3 167 5 144 3 170 0.69 # 30391 # 31107 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_34 - 511 AAA_14 PF13173.1 128 9.5e-05 14.3 0.6 1 2 0.0001 0.0054 8.6 0.1 7 41 131 169 127 305 0.81 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_34 - 511 AAA_14 PF13173.1 128 9.5e-05 14.3 0.6 2 2 0.0078 0.4 2.6 0.0 60 77 342 370 302 395 0.59 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_35 - 141 Rossmann-like PF10727.4 127 7.2e-05 14.5 0.0 1 1 2e-06 0.0001 14.0 0.0 78 111 73 106 45 115 0.85 # 29048 # 29470 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_12 - 858 AAA_29 PF13555.1 62 1.7e-05 16.3 0.0 1 1 1.5e-06 3.9e-05 15.2 0.0 23 41 487 504 475 508 0.86 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_19 - 334 AAA_29 PF13555.1 62 4.7e-05 14.9 0.0 1 1 4.8e-06 0.00013 13.6 0.0 22 53 158 189 149 197 0.83 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 Sigma54_activat PF00158.21 168 5.1e-06 18.0 0.0 1 1 1.8e-07 9.3e-06 17.2 0.0 16 67 153 204 140 213 0.80 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 MMR_HSR1 PF01926.18 116 0.00043 12.3 0.0 1 1 1.8e-05 0.00095 11.2 0.0 2 24 162 189 161 244 0.73 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 DUF258 PF03193.11 161 5.9e-05 14.3 0.0 1 1 2.2e-06 0.00011 13.4 0.0 30 97 154 219 135 229 0.74 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_34 - 511 TraG-D_C PF12696.2 128 1.4e-20 65.4 0.0 1 1 5e-22 2.6e-20 64.6 0.0 1 127 352 474 352 475 0.82 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 AAA_33 PF13671.1 143 0.00012 14.0 0.0 1 1 4.1e-06 0.00021 13.2 0.0 2 62 162 236 161 249 0.81 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_33 - 1069 AAA_30 PF13604.1 196 3.2e-50 162.4 4.5 1 1 1.2e-51 3.2e-50 162.4 4.5 1 186 480 657 480 665 0.97 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 334 AAA_30 PF13604.1 196 3.2e-05 15.5 0.1 1 1 2e-06 5.3e-05 14.8 0.1 13 65 155 206 143 228 0.77 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 FtsK_SpoIIIE PF01580.13 205 4.1e-07 21.6 0.0 1 1 3.7e-08 6.5e-07 21.0 0.0 27 65 148 186 120 207 0.71 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 858 FtsK_SpoIIIE PF01580.13 205 4.3e-06 18.3 0.0 1 1 6.7e-07 1.2e-05 16.9 0.0 21 64 457 512 441 522 0.80 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_34 - 511 FtsK_SpoIIIE PF01580.13 205 3.2e-05 15.4 0.0 1 2 6.7e-05 0.0012 10.3 0.0 29 65 111 153 93 166 0.75 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_34 - 511 FtsK_SpoIIIE PF01580.13 205 3.2e-05 15.4 0.0 2 2 0.015 0.25 2.7 0.0 100 137 424 463 415 481 0.77 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 ABC_tran PF00005.22 137 1.4e-07 23.9 0.0 1 1 4.3e-09 2.2e-07 23.2 0.0 8 51 156 200 152 260 0.86 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 AAA_19 PF13245.1 76 4e-05 15.4 0.1 1 1 1.8e-06 9.4e-05 14.2 0.1 6 47 155 191 151 221 0.80 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_33 - 1069 Helicase_RecD PF05127.9 177 0.0013 10.4 5.9 1 1 9e-06 0.00047 11.8 1.3 5 115 457 589 455 603 0.58 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 858 AAA_10 PF12846.2 304 1e-31 102.4 0.0 1 1 2e-32 3.4e-31 100.7 0.0 2 293 487 763 486 770 0.88 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_34 - 511 AAA_10 PF12846.2 304 8.3e-12 37.0 0.0 1 2 3.4e-08 5.9e-07 21.1 0.0 3 46 128 172 126 215 0.86 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_34 - 511 AAA_10 PF12846.2 304 8.3e-12 37.0 0.0 2 2 5.6e-06 9.7e-05 13.8 0.0 214 285 329 415 308 433 0.70 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 AAA_10 PF12846.2 304 0.0001 13.8 0.0 1 1 1.2e-05 0.00021 12.8 0.0 3 28 161 186 159 218 0.74 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 ResIII PF04851.10 184 5.7e-05 15.0 0.0 1 1 2.1e-06 0.00011 14.1 0.0 22 58 141 194 100 214 0.73 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_33 - 1069 Viral_helicase1 PF01443.13 234 1.9e-15 48.9 1.8 1 2 1e-07 5.4e-06 18.0 0.0 3 117 502 619 500 667 0.67 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 1069 Viral_helicase1 PF01443.13 234 1.9e-15 48.9 1.8 2 2 3.4e-11 1.7e-09 29.4 0.7 165 234 833 903 780 903 0.68 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 334 DUF2075 PF09848.4 352 1.4e-05 16.1 0.0 1 1 3.7e-07 1.9e-05 15.7 0.0 1 58 159 213 159 240 0.70 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 DEAD PF00270.24 169 9e-06 17.2 0.1 1 1 3e-07 1.6e-05 16.5 0.1 11 70 156 212 147 232 0.79 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_34 - 511 TrwB_AAD_bind PF10412.4 386 1.9e-110 361.0 0.0 1 1 1.3e-111 2.2e-110 360.8 0.0 1 385 112 493 112 494 0.94 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_12 - 858 TrwB_AAD_bind PF10412.4 386 4.3e-06 17.5 0.1 1 1 1e-06 1.8e-05 15.5 0.0 16 51 487 522 480 531 0.92 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_19 - 334 TrwB_AAD_bind PF10412.4 386 1.1e-05 16.1 0.0 1 1 1e-06 1.8e-05 15.4 0.0 13 49 157 192 149 201 0.82 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 Sigma54_activ_2 PF14532.1 138 1.9e-07 23.2 0.0 1 1 6.9e-09 3.6e-07 22.3 0.0 14 68 152 206 145 213 0.91 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_34 - 511 T4SS-DNA_transf PF02534.9 469 1.2e-14 45.6 0.0 1 2 0.024 1.2 -0.6 0.0 46 88 128 173 100 266 0.76 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_34 - 511 T4SS-DNA_transf PF02534.9 469 1.2e-14 45.6 0.0 2 2 1e-15 5.3e-14 43.5 0.0 252 439 302 488 298 502 0.82 # 27516 # 29048 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 Pox_A32 PF04665.7 241 0.00016 13.0 0.0 1 1 5.5e-06 0.00029 12.2 0.0 14 44 160 190 149 211 0.82 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_33 - 1069 PIF1 PF05970.9 364 1.3e-05 16.2 0.2 1 2 6.8e-06 0.00018 12.5 0.1 5 66 484 541 480 604 0.80 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 1069 PIF1 PF05970.9 364 1.3e-05 16.2 0.2 2 2 0.019 0.5 1.1 0.0 334 362 798 825 785 827 0.87 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 334 PIF1 PF05970.9 364 0.0004 11.3 0.0 1 1 2.6e-05 0.00067 10.6 0.0 21 57 158 194 150 208 0.80 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 RNA_helicase PF00910.17 107 0.00024 13.3 0.0 1 1 1.4e-05 0.00075 11.7 0.0 1 24 162 185 162 215 0.79 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 UPF0079 PF02367.12 123 6.2e-06 17.9 0.0 1 1 2.3e-07 1.2e-05 17.0 0.0 11 45 155 189 145 193 0.85 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_19 - 334 NACHT PF05729.7 166 1.5e-05 16.7 0.0 1 1 1.2e-06 3.2e-05 15.6 0.0 1 24 160 183 160 188 0.90 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_12 - 858 NACHT PF05729.7 166 0.00048 11.8 0.1 1 2 0.00049 0.013 7.2 0.1 3 19 489 505 488 514 0.86 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 858 NACHT PF05729.7 166 0.00048 11.8 0.1 2 2 0.022 0.57 1.8 0.0 100 161 728 789 692 794 0.78 # 4812 # 7385 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_19 - 334 AAA_25 PF13481.1 194 9.9e-05 13.8 0.0 1 1 7e-06 0.00036 11.9 0.0 20 58 147 184 129 210 0.78 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_33 - 1069 Herpes_Helicase PF02689.9 819 1.2e-05 15.2 0.4 1 3 0.0011 0.058 3.0 0.0 169 209 538 578 490 585 0.85 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 1069 Herpes_Helicase PF02689.9 819 1.2e-05 15.2 0.4 2 3 0.041 2.1 -2.2 0.0 397 454 639 704 625 709 0.67 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 1069 Herpes_Helicase PF02689.9 819 1.2e-05 15.2 0.4 3 3 1.4e-05 0.00075 9.2 0.0 736 782 851 898 829 917 0.77 # 24305 # 27511 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_19 - 334 AAA_5 PF07728.9 139 1.5e-05 16.8 0.0 1 1 6.6e-07 3.4e-05 15.6 0.0 2 31 162 192 161 221 0.77 # 12410 # 13411 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cfe2a6b9-57d2-4e66-ba9b-5d87fff8aa3c # Target file: checkm_output/bins/pm1108/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1108/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cfe2a6b9-57d2-4e66-ba9b-5d87fff8aa3c checkm_output/bins/pm1108/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:22 2020 # [ok]