# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 414 Methyltransf_32 PF13679.1 141 0.00012 15.0 0.2 1 1 2.5e-06 0.00032 13.6 0.0 15 77 48 106 34 163 0.78 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_4 - 414 Methyltransf_12 PF08242.7 99 0.00018 15.2 0.3 1 1 7.9e-06 0.001 12.8 0.0 2 37 64 97 63 152 0.76 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_56 - 234 UPF0020 PF01170.13 180 4.7e-06 19.5 0.0 1 2 0.00016 0.0069 9.2 0.0 103 120 17 34 5 75 0.83 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_56 - 234 UPF0020 PF01170.13 180 4.7e-06 19.5 0.0 2 2 0.00028 0.012 8.4 0.0 28 51 170 193 165 227 0.75 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_68 - 188 UPF0020 PF01170.13 180 1.6e-05 17.8 0.0 1 1 2.2e-06 9.4e-05 15.3 0.0 19 54 41 78 39 138 0.74 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_4 - 414 UPF0020 PF01170.13 180 0.00017 14.4 0.0 1 1 8.4e-06 0.00036 13.4 0.0 28 117 58 137 41 169 0.77 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_68 - 188 RrnaAD PF00398.15 262 3.2e-07 22.8 0.0 1 1 3.4e-09 4.4e-07 22.4 0.0 9 113 29 128 26 140 0.90 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_49 - 209 MipZ PF09140.6 261 2.2e-21 69.3 0.5 1 2 1.2e-12 1.5e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 MipZ PF09140.6 261 2.2e-21 69.3 0.5 2 2 1.6e-12 2e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 YhjQ PF06564.7 244 3e-05 16.7 0.3 1 2 1.8e-06 0.00023 13.8 0.3 4 38 3 37 1 50 0.89 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 YhjQ PF06564.7 244 3e-05 16.7 0.3 2 2 0.029 3.8 0.0 0.0 108 144 69 103 44 113 0.78 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_28 - 692 3HCDH_N PF02737.13 180 0.0068 9.3 6.6 1 2 0.006 0.77 2.6 2.4 1 30 99 128 99 134 0.93 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 3HCDH_N PF02737.13 180 0.0068 9.3 6.6 2 2 0.00012 0.016 8.1 0.1 2 39 272 309 271 347 0.73 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 GIDA PF01134.17 392 3.9e-08 25.7 6.0 1 2 4.4e-10 5.7e-08 25.2 3.1 2 186 100 278 99 302 0.72 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 GIDA PF01134.17 392 3.9e-08 25.7 6.0 2 2 0.024 3.1 -0.3 0.1 350 385 394 429 388 433 0.76 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 3_1 - 181 SSB PF00436.20 104 5.4e-42 135.2 0.3 1 1 5.1e-44 6.6e-42 134.9 0.3 1 99 6 105 6 113 0.97 # 271 # 813 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_68 - 188 Methyltransf_18 PF12847.2 112 1.2e-07 25.5 0.0 1 1 3.2e-09 2.1e-07 24.8 0.0 2 107 51 144 50 146 0.92 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_4 - 414 Methyltransf_18 PF12847.2 112 2.4e-06 21.4 0.0 1 1 2.1e-07 1.3e-05 19.0 0.0 3 42 60 99 58 194 0.83 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_36 - 1661 UvrD_C_2 PF13538.1 104 1.7e-07 24.6 0.4 1 1 2.6e-08 1.1e-06 22.0 0.1 3 102 1247 1350 1240 1352 0.75 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 1_36 - 341 UvrD_C_2 PF13538.1 104 1.4e-06 21.7 0.0 1 1 7e-08 3e-06 20.6 0.0 33 104 243 330 222 330 0.75 # 31009 # 32031 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_22 - 327 UvrD_C_2 PF13538.1 104 0.00041 13.8 0.0 1 1 6.6e-05 0.0028 11.1 0.0 70 103 137 171 83 171 0.86 # 20015 # 20995 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_28 - 692 Pyr_redox_2 PF07992.9 201 1.5e-43 142.2 0.0 1 1 5.4e-45 7e-43 140.1 0.0 2 199 100 410 99 412 0.96 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 2_15 - 880 DUF87 PF01935.12 229 5.9e-06 19.5 0.0 1 2 0.056 7.2 -0.4 0.2 113 171 312 362 304 396 0.60 # 10330 # 12969 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_15 - 880 DUF87 PF01935.12 229 5.9e-06 19.5 0.0 2 2 3e-07 3.9e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 10330 # 12969 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_36 - 1661 AAA_22 PF13401.1 131 7.6e-05 16.2 0.0 1 2 0.016 0.69 3.3 0.0 89 121 412 443 375 445 0.72 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 2_36 - 1661 AAA_22 PF13401.1 131 7.6e-05 16.2 0.0 2 2 0.0003 0.013 8.9 0.0 3 29 893 919 890 972 0.79 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 1_36 - 341 AAA_22 PF13401.1 131 9.6e-05 15.8 0.0 1 1 1.1e-05 0.00046 13.6 0.0 8 111 5 155 4 167 0.77 # 31009 # 32031 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_6 - 666 AAA_22 PF13401.1 131 0.00011 15.6 0.1 1 2 0.00035 0.015 8.7 0.0 5 28 39 62 35 98 0.79 # 5621 # 7618 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 666 AAA_22 PF13401.1 131 0.00011 15.6 0.1 2 2 0.0092 0.39 4.1 0.0 55 122 175 247 142 256 0.76 # 5621 # 7618 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.359 1_28 - 692 DFP PF04127.10 185 0.0016 11.3 2.4 1 2 0.0005 0.065 6.1 0.4 28 51 105 128 99 156 0.83 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 DFP PF04127.10 185 0.0016 11.3 2.4 2 2 0.0018 0.23 4.3 0.1 32 53 281 302 276 336 0.77 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_49 - 209 SRP54 PF00448.17 196 3.3e-07 23.2 0.1 1 1 1.5e-08 1.9e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_37 - 521 AAA_15 PF13175.1 415 5.9e-19 61.6 0.1 1 2 2.4e-10 3e-08 26.3 0.0 2 45 5 47 4 64 0.90 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_37 - 521 AAA_15 PF13175.1 415 5.9e-19 61.6 0.1 2 2 1.7e-12 2.2e-10 33.3 0.1 315 414 219 317 177 318 0.72 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_28 - 692 NAD_binding_7 PF13241.1 103 7.3e-07 22.7 1.1 1 2 7.2e-05 0.0092 9.5 0.2 9 38 99 128 96 181 0.90 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 NAD_binding_7 PF13241.1 103 7.3e-07 22.7 1.1 2 2 1.9e-05 0.0024 11.4 0.1 8 41 270 306 264 379 0.74 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_56 - 234 N6_N4_Mtase PF01555.13 231 7.1e-33 107.2 0.0 1 2 3.3e-13 4.2e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_56 - 234 N6_N4_Mtase PF01555.13 231 7.1e-33 107.2 0.0 2 2 2e-23 2.6e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_49 - 209 AAA_17 PF13207.1 121 2.8e-05 18.2 0.0 1 1 4.2e-07 5.5e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_37 - 521 AAA_21 PF13304.1 303 1.2e-14 48.1 0.0 1 2 7e-07 9e-05 15.8 0.0 2 24 27 49 27 78 0.83 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_37 - 521 AAA_21 PF13304.1 303 1.2e-14 48.1 0.0 2 2 3.3e-11 4.3e-09 30.0 0.1 258 301 274 317 222 319 0.86 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 209 MobB PF03205.9 140 7.6e-05 15.7 0.1 1 1 1.6e-06 0.00021 14.3 0.0 10 42 11 41 1 46 0.79 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.8 0.4 1 2 1.2e-09 1.5e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.8 0.4 2 2 0.053 6.9 -1.2 0.0 121 135 69 85 47 86 0.75 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_28 - 692 NAD_binding_8 PF13450.1 68 6.1e-05 16.3 1.2 1 2 4.8e-07 6.1e-05 16.3 1.2 1 35 102 135 102 154 0.91 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 NAD_binding_8 PF13450.1 68 6.1e-05 16.3 1.2 2 2 0.054 7 0.1 0.2 1 25 274 298 274 302 0.81 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_37 - 521 SMC_N PF02463.14 220 1.3e-11 37.4 0.0 1 2 1.4e-11 1.8e-09 30.4 0.0 2 70 4 68 3 79 0.85 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_37 - 521 SMC_N PF02463.14 220 1.3e-11 37.4 0.0 2 2 0.00084 0.11 4.9 0.0 160 204 277 320 203 329 0.85 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 209 VirC1 PF07015.6 231 3.5e-09 29.3 0.0 1 1 5.9e-11 7.7e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 Fer4_NifH PF00142.13 273 9.6e-05 14.9 0.0 1 1 2.3e-06 0.0003 13.3 0.0 8 38 9 39 2 46 0.89 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 2_34 - 771 AAA_16 PF13191.1 185 3.9e-06 20.2 0.0 1 1 1.4e-07 1.8e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 27642 # 29954 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_37 - 521 AAA_23 PF13476.1 202 3e-11 37.3 0.0 1 1 9e-13 1.2e-10 35.3 0.0 1 53 6 58 6 144 0.88 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_49 - 209 CbiA PF01656.18 195 3.1e-22 72.2 0.0 1 1 4.7e-24 6.1e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_4 - 414 Methyltransf_25 PF13649.1 101 0.00061 13.4 0.0 1 1 1.1e-05 0.0014 12.2 0.0 1 73 62 132 62 159 0.84 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_28 - 692 HI0933_like PF03486.9 409 4.9e-08 25.0 3.9 1 2 1.5e-06 0.0002 13.2 2.5 2 33 99 130 98 138 0.91 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 HI0933_like PF03486.9 409 4.9e-08 25.0 3.9 2 2 9.7e-06 0.0013 10.5 0.0 83 164 285 366 277 385 0.83 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_37 - 521 AAA_29 PF13555.1 62 2e-07 23.8 0.0 1 1 5.8e-09 3.8e-07 22.9 0.0 2 49 5 50 4 57 0.81 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 2_36 - 1661 AAA_29 PF13555.1 62 0.00067 12.5 0.1 1 2 0.0071 0.46 3.4 0.1 25 44 388 407 377 415 0.83 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 2_36 - 1661 AAA_29 PF13555.1 62 0.00067 12.5 0.1 2 2 0.0017 0.11 5.4 0.0 22 46 893 917 883 927 0.81 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 1_28 - 692 FAD_binding_2 PF00890.19 417 7e-06 18.3 4.7 1 3 5.4e-08 7e-06 18.3 4.7 2 32 100 130 99 137 0.90 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 FAD_binding_2 PF00890.19 417 7e-06 18.3 4.7 2 3 0.049 6.3 -1.3 0.1 145 204 313 369 304 388 0.71 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 FAD_binding_2 PF00890.19 417 7e-06 18.3 4.7 3 3 0.085 11 -2.1 0.0 376 402 388 408 367 422 0.83 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 2_18 - 134 CobU PF02283.11 167 0.00051 12.7 0.2 1 1 7.2e-06 0.00093 11.9 0.0 64 112 80 129 59 133 0.70 # 14028 # 14429 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 692 Pyr_redox_3 PF13738.1 203 3e-17 56.6 0.1 1 2 6.7e-14 8.6e-12 38.8 0.1 1 201 101 303 101 305 0.75 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 Pyr_redox_3 PF13738.1 203 3e-17 56.6 0.1 2 2 1.2e-06 0.00016 15.1 0.0 93 147 320 375 309 429 0.77 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_4 - 414 N6_Mtase PF02384.11 311 1e-17 57.4 0.4 1 1 2.3e-19 1.5e-17 56.9 0.4 21 271 33 281 26 316 0.80 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_68 - 188 N6_Mtase PF02384.11 311 0.00012 14.4 0.0 1 2 5.3e-05 0.0034 9.7 0.0 28 71 32 75 21 93 0.82 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_68 - 188 N6_Mtase PF02384.11 311 0.00012 14.4 0.0 2 2 0.011 0.73 2.0 0.0 124 138 111 125 95 133 0.81 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_34 - 771 TraG-D_C PF12696.2 128 7.4e-19 61.2 0.0 1 1 1.3e-20 1.7e-18 60.0 0.0 1 127 419 541 419 542 0.88 # 27642 # 29954 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_49 - 209 AAA_31 PF13614.1 157 5.5e-06 19.7 0.0 1 2 2.5e-07 3.2e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 AAA_31 PF13614.1 157 5.5e-06 19.7 0.0 2 2 0.055 7.1 -0.2 0.0 109 127 68 86 62 113 0.68 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_68 - 188 Methyltransf_26 PF13659.1 117 2.4e-13 43.5 0.1 1 1 8.8e-15 3.8e-13 42.8 0.1 2 111 52 144 51 148 0.90 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_56 - 234 Methyltransf_26 PF13659.1 117 3.5e-11 36.5 0.2 1 2 9.7e-07 4.2e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_56 - 234 Methyltransf_26 PF13659.1 117 3.5e-11 36.5 0.2 2 2 5.9e-07 2.5e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_4 - 414 Methyltransf_26 PF13659.1 117 1.1e-09 31.6 0.0 1 1 4.8e-11 2.1e-09 30.8 0.0 3 116 61 186 59 187 0.69 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_36 - 1661 AAA_30 PF13604.1 196 7.6e-43 139.6 15.8 1 2 4.4e-07 5.6e-05 16.0 1.0 9 126 331 443 329 468 0.86 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 2_36 - 1661 AAA_30 PF13604.1 196 7.6e-43 139.6 15.8 2 2 4.6e-43 5.9e-41 133.4 0.8 2 186 878 1065 877 1069 0.94 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 2_15 - 880 FtsK_SpoIIIE PF01580.13 205 0.00014 14.6 0.0 1 1 2.7e-06 0.00035 13.3 0.0 39 63 480 506 466 508 0.85 # 10330 # 12969 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_4 - 414 MTS PF05175.9 170 4.4e-11 35.7 0.1 1 2 4e-12 2.6e-10 33.2 0.0 20 116 47 144 43 151 0.81 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_4 - 414 MTS PF05175.9 170 4.4e-11 35.7 0.1 2 2 0.092 6 -0.5 0.1 72 104 271 305 249 313 0.73 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_68 - 188 MTS PF05175.9 170 1.4e-09 30.8 0.0 1 1 3e-11 1.9e-09 30.3 0.0 24 142 43 150 38 170 0.84 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_37 - 521 DUF2813 PF11398.3 373 4.4e-05 15.9 3.2 1 2 5.9e-06 0.00076 11.8 0.0 12 49 13 51 3 56 0.79 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_37 - 521 DUF2813 PF11398.3 373 4.4e-05 15.9 3.2 2 2 0.0012 0.15 4.3 0.2 280 333 271 325 258 330 0.80 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_37 - 521 ABC_tran PF00005.22 137 0.00038 14.1 0.0 1 1 9.1e-06 0.0012 12.5 0.0 15 113 28 155 18 161 0.71 # 32016 # 33578 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_28 - 692 K_oxygenase PF13434.1 341 1.4e-05 17.4 0.0 1 2 0.0051 0.66 2.0 0.0 187 220 94 125 61 130 0.79 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 K_oxygenase PF13434.1 341 1.4e-05 17.4 0.0 2 2 4.2e-06 0.00054 12.1 0.0 132 231 218 308 203 339 0.82 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_56 - 234 Cons_hypoth95 PF03602.10 183 3.9e-06 19.6 0.0 1 2 0.00012 0.016 7.8 0.0 113 170 19 78 12 86 0.73 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_56 - 234 Cons_hypoth95 PF03602.10 183 3.9e-06 19.6 0.0 2 2 3.1e-05 0.004 9.8 0.0 20 60 149 188 142 225 0.73 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_4 - 414 Eco57I PF07669.6 106 2e-07 24.7 0.3 1 1 4.6e-09 6e-07 23.1 0.0 4 103 128 234 125 237 0.84 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_36 - 1661 AAA_19 PF13245.1 76 4.9e-07 22.8 0.8 1 1 7.6e-09 4.9e-07 22.8 0.8 8 74 891 954 883 957 0.71 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 1_49 - 209 AAA_19 PF13245.1 76 0.00073 12.6 0.1 1 2 0.00019 0.012 8.6 0.0 20 48 11 35 9 44 0.84 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_49 - 209 AAA_19 PF13245.1 76 0.00073 12.6 0.1 2 2 0.044 2.9 1.1 0.0 42 62 135 155 118 180 0.75 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_68 - 188 Methyltransf_2 PF00891.13 242 0.0015 11.0 0.0 1 1 1.7e-05 0.0023 10.4 0.0 111 159 60 110 40 119 0.83 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_15 - 880 AAA_10 PF12846.2 304 1e-45 149.7 0.0 1 1 5e-47 1.6e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 10330 # 12969 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_34 - 771 AAA_10 PF12846.2 304 4.2e-09 29.5 0.0 1 1 3.7e-08 1.2e-06 21.4 0.0 3 295 187 493 186 499 0.63 # 27642 # 29954 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_49 - 209 AAA_10 PF12846.2 304 0.0002 14.1 0.0 1 1 1e-05 0.00032 13.4 0.0 11 39 11 39 3 67 0.90 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_42 - 132 AAA_10 PF12846.2 304 0.00099 11.8 0.0 1 2 0.00027 0.0088 8.7 0.0 241 264 12 35 9 45 0.89 # 35577 # 35972 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_42 - 132 AAA_10 PF12846.2 304 0.00099 11.8 0.0 2 2 0.054 1.7 1.2 0.0 209 235 104 128 68 130 0.72 # 35577 # 35972 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_28 - 692 FAD_oxidored PF12831.2 428 4.9e-06 19.1 3.6 1 1 3.8e-08 4.9e-06 19.1 3.6 2 41 100 138 99 167 0.83 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 DAO PF01266.19 358 1.3e-07 24.0 16.5 1 4 1.8e-08 2.4e-06 19.9 0.8 1 38 99 134 99 189 0.85 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 DAO PF01266.19 358 1.3e-07 24.0 16.5 2 4 0.041 5.2 -1.0 0.1 3 31 273 301 271 305 0.74 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 DAO PF01266.19 358 1.3e-07 24.0 16.5 3 4 1.1e-06 0.00015 14.0 0.6 152 227 314 391 305 457 0.75 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 DAO PF01266.19 358 1.3e-07 24.0 16.5 4 4 0.048 6.2 -1.2 0.3 204 204 578 578 529 685 0.51 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_4 - 414 Methyltransf_31 PF13847.1 152 8.8e-07 21.9 0.0 1 1 1.4e-08 1.8e-06 20.8 0.0 2 43 57 97 56 143 0.87 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_42 - 132 Zot PF05707.7 193 0.00034 13.4 0.0 1 1 4.7e-06 0.00061 12.5 0.0 98 127 5 35 1 46 0.82 # 35577 # 35972 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 1_36 - 341 Viral_helicase1 PF01443.13 234 4.8e-11 35.8 0.3 1 2 4.9e-07 6.3e-05 15.8 0.0 2 30 5 38 4 54 0.72 # 31009 # 32031 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_36 - 341 Viral_helicase1 PF01443.13 234 4.8e-11 35.8 0.3 2 2 2.1e-07 2.7e-05 17.0 0.5 63 233 133 330 125 331 0.66 # 31009 # 32031 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 692 NAD_binding_9 PF13454.1 156 5.6e-05 16.2 2.7 1 3 0.01 1.4 2.0 0.1 1 41 101 135 101 162 0.81 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 NAD_binding_9 PF13454.1 156 5.6e-05 16.2 2.7 2 3 0.044 5.6 -0.0 0.0 134 155 218 241 203 242 0.72 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 NAD_binding_9 PF13454.1 156 5.6e-05 16.2 2.7 3 3 8.6e-06 0.0011 12.0 0.1 112 155 321 366 311 367 0.85 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 Pyr_redox PF00070.22 80 2.4e-19 62.9 11.6 1 3 1.8e-06 0.00023 14.8 1.5 1 31 99 129 99 131 0.96 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 Pyr_redox PF00070.22 80 2.4e-19 62.9 11.6 2 3 8.3e-18 1.1e-15 51.2 0.2 1 74 271 345 271 354 0.90 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 Pyr_redox PF00070.22 80 2.4e-19 62.9 11.6 3 3 0.021 2.7 1.8 0.2 14 50 649 685 646 689 0.83 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 2_34 - 771 TrwB_AAD_bind PF10412.4 386 7.7e-148 485.4 0.0 1 1 1.5e-149 9.8e-148 485.0 0.0 2 386 172 561 171 561 0.99 # 27642 # 29954 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_15 - 880 TrwB_AAD_bind PF10412.4 386 2e-05 16.6 0.2 1 1 8e-07 5.2e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 10330 # 12969 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_36 - 1661 AAA_11 PF13086.1 236 2.1e-05 17.4 3.0 1 2 3.6e-07 4.6e-05 16.3 0.0 2 72 878 945 877 972 0.83 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 2_36 - 1661 AAA_11 PF13086.1 236 2.1e-05 17.4 3.0 2 2 0.031 4 0.1 0.0 3 35 1089 1120 1087 1247 0.70 # 30234 # 35216 # 1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.623 2_34 - 771 T4SS-DNA_transf PF02534.9 469 9.5e-08 24.2 0.0 1 2 0.08 10 -2.3 0.0 130 199 262 330 253 360 0.69 # 27642 # 29954 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 2_34 - 771 T4SS-DNA_transf PF02534.9 469 9.5e-08 24.2 0.0 2 2 1.8e-09 2.3e-07 23.0 0.0 274 374 392 488 361 556 0.75 # 27642 # 29954 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_68 - 188 TIGR00755 TIGR00755 256 8.2e-08 24.7 0.0 1 1 1.8e-09 1.2e-07 24.2 0.0 8 105 29 123 26 128 0.90 # 53572 # 54135 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_4 - 414 TIGR00755 TIGR00755 256 1.3e-06 20.8 0.0 1 1 4.4e-08 2.8e-06 19.7 0.0 3 108 33 140 31 165 0.77 # 3475 # 4716 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_15 - 880 Pox_A32 PF04665.7 241 9.7e-05 15.0 0.0 1 1 1.5e-06 0.0002 14.0 0.0 6 40 474 508 470 523 0.82 # 10330 # 12969 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_28 - 692 AlaDh_PNT_C PF01262.16 168 5.1e-05 16.1 3.1 1 2 0.00066 0.085 5.7 0.8 15 50 92 127 89 130 0.90 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_28 - 692 AlaDh_PNT_C PF01262.16 168 5.1e-05 16.1 3.1 2 2 2.8e-05 0.0036 10.2 0.1 16 58 265 307 257 339 0.84 # 24662 # 26737 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.659 1_36 - 341 UvrD-helicase PF00580.16 315 2.7e-08 26.7 0.0 1 2 1.2e-05 0.0016 11.0 0.0 16 67 4 47 2 86 0.80 # 31009 # 32031 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_36 - 341 UvrD-helicase PF00580.16 315 2.7e-08 26.7 0.0 2 2 1.9e-06 0.00025 13.6 0.0 242 294 115 170 91 174 0.86 # 31009 # 32031 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 1_49 - 209 AAA_25 PF13481.1 194 0.00017 14.3 0.1 1 1 3.1e-06 0.0004 13.1 0.0 42 87 10 44 3 90 0.78 # 39088 # 39714 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_56 - 234 Methyltransf_15 PF09445.5 164 0.00097 12.0 0.0 1 2 0.023 3 0.6 0.0 53 80 4 30 2 38 0.91 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_56 - 234 Methyltransf_15 PF09445.5 164 0.00097 12.0 0.0 2 2 7e-05 0.009 8.8 0.0 3 30 173 200 171 213 0.90 # 45969 # 46670 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/69b033c0-5db6-4d8f-8764-6b30d92a2403 # Target file: checkm_output/bins/pm1102/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1102/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/69b033c0-5db6-4d8f-8764-6b30d92a2403 checkm_output/bins/pm1102/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:20 2020 # [ok]