# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 145 SSB PF00436.20 104 6.2e-31 99.1 0.3 1 1 8.5e-33 7.1e-31 98.9 0.3 2 103 7 111 6 112 0.96 # 7143 # 7577 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_23 - 388 DUF87 PF01935.12 229 7.6e-05 15.2 0.0 1 1 1.8e-06 0.00015 14.2 0.0 28 45 157 174 155 188 0.89 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 AAA_22 PF13401.1 131 2.4e-06 20.4 0.0 1 1 1.4e-07 5.9e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_36 - 1017 AAA_22 PF13401.1 131 0.00017 14.4 0.0 1 1 1.3e-05 0.00056 12.7 0.0 8 73 492 561 486 594 0.70 # 24802 # 27852 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 388 ATP_bind_1 PF03029.12 238 0.00068 11.8 0.0 1 1 1.3e-05 0.0011 11.2 0.0 1 25 157 181 157 191 0.84 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_36 - 1017 AAA_17 PF13207.1 121 5.1e-05 16.8 0.0 1 1 4.3e-06 0.00035 14.0 0.0 3 27 492 522 492 581 0.72 # 24802 # 27852 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 388 Miro PF08477.8 119 0.00079 12.6 0.0 1 1 2.1e-05 0.0018 11.5 0.0 4 28 157 186 156 220 0.72 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 MobB PF03205.9 140 0.00042 12.7 0.0 1 1 1e-05 0.00086 11.7 0.0 4 25 156 177 154 190 0.85 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 T2SE PF00437.15 272 2.4e-23 75.0 0.0 1 1 4.6e-25 3.8e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 SMC_N PF02463.14 220 0.00097 11.0 0.0 1 1 2.1e-05 0.0018 10.2 0.0 26 50 154 178 147 195 0.81 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 AAA_16 PF13191.1 185 0.00073 12.2 0.0 1 1 1.8e-05 0.0015 11.2 0.0 26 50 154 178 140 211 0.85 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 AAA_23 PF13476.1 202 1.7e-06 21.2 0.1 1 1 4.2e-08 3.5e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_36 - 1017 AAA_18 PF13238.1 129 7e-05 15.8 1.3 1 1 3.5e-06 0.00029 13.8 0.0 2 19 492 509 492 571 0.76 # 24802 # 27852 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_23 - 388 KaiC PF06745.8 227 0.0007 11.4 0.0 1 1 1.5e-05 0.0012 10.6 0.0 14 59 147 191 137 201 0.76 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 AAA_29 PF13555.1 62 7.4e-06 18.1 0.1 1 1 2.2e-07 1.8e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 Ribosomal_S5 PF00333.15 67 2.5e-05 16.7 0.1 1 2 0.00091 0.076 5.5 0.0 26 45 84 103 76 114 0.83 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 Ribosomal_S5 PF00333.15 67 2.5e-05 16.7 0.1 2 2 0.00012 0.0097 8.4 0.0 21 54 242 274 230 278 0.91 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_43 - 696 TraG-D_C PF12696.2 128 0.00011 14.7 0.1 1 1 2.4e-06 0.0002 13.9 0.1 3 94 437 524 435 556 0.78 # 35524 # 37611 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_23 - 388 FtsK_SpoIIIE PF01580.13 205 8.2e-05 14.8 0.0 1 1 1.9e-06 0.00016 13.8 0.0 41 59 155 173 129 184 0.85 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 ABC_tran PF00005.22 137 0.00012 15.1 0.0 1 1 2.7e-06 0.00022 14.2 0.0 16 33 157 174 149 217 0.83 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_36 - 1017 AAA_19 PF13245.1 76 0.00043 12.7 0.0 1 1 1.6e-05 0.0013 11.1 0.0 14 31 492 508 481 518 0.90 # 24802 # 27852 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_36 - 1017 AAA_10 PF12846.2 304 6.9e-41 133.2 0.1 1 1 5.5e-42 1.5e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 24802 # 27852 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_43 - 696 AAA_10 PF12846.2 304 5.2e-10 31.8 0.0 1 1 2.8e-11 7.8e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 35524 # 37611 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_23 - 388 AAA_10 PF12846.2 304 1.2e-06 20.8 0.0 1 1 2.5e-07 6.9e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_36 - 1017 DUF2075 PF09848.4 352 0.00029 12.5 0.0 1 1 1.1e-05 0.00091 10.8 0.0 5 22 492 509 489 537 0.87 # 24802 # 27852 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_4 - 287 Methyltransf_27 PF13708.1 194 1.1e-68 223.2 0.0 1 1 2.3e-70 1.9e-68 222.5 0.0 2 194 89 282 88 282 0.97 # 2615 # 3475 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_43 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 1 3 1.7e-05 0.0014 9.8 0.0 16 36 134 154 125 158 0.88 # 35524 # 37611 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_43 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 2 3 9.3e-05 0.0077 7.4 0.1 93 140 235 281 229 303 0.80 # 35524 # 37611 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_43 - 696 TrwB_AAD_bind PF10412.4 386 1.5e-06 19.6 0.9 3 3 0.083 6.9 -2.3 0.0 293 323 482 512 405 546 0.58 # 35524 # 37611 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_23 - 388 GTP_EFTU PF00009.22 188 0.00089 11.4 0.0 1 1 2e-05 0.0016 10.5 0.0 8 34 157 183 155 195 0.87 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 RNA_helicase PF00910.17 107 0.00093 12.1 0.0 1 1 2.5e-05 0.0021 10.9 0.0 3 26 157 180 156 197 0.81 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 NACHT PF05729.7 166 0.00028 13.2 0.0 1 1 6.6e-06 0.00055 12.3 0.0 4 29 156 181 154 188 0.83 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 388 AAA_25 PF13481.1 194 4.8e-06 18.7 0.0 1 1 1.3e-07 1.1e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 13339 # 14502 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/96423802-c3ed-4ad5-9d90-623087ebfd29 # Target file: checkm_output/bins/pm1084/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1084/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/96423802-c3ed-4ad5-9d90-623087ebfd29 checkm_output/bins/pm1084/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:09 2020 # [ok]