# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 325 Mg_chelatase PF01078.16 207 6.9e-09 27.6 0.0 1 2 0.00013 0.0093 7.6 0.0 25 45 32 52 27 60 0.89 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_11 - 325 Mg_chelatase PF01078.16 207 6.9e-09 27.6 0.0 2 2 1e-07 7.5e-06 17.7 0.0 92 157 86 149 79 158 0.89 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_9 - 303 Eno-Rase_NADH_b PF12242.3 78 4.2e-06 19.0 0.1 1 1 1.1e-07 8.3e-06 18.1 0.1 33 66 52 83 45 93 0.80 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_9 - 303 DUF1776 PF08643.5 299 7.5e-05 14.4 0.0 1 1 1.5e-06 0.00011 13.8 0.0 107 195 152 234 146 239 0.84 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 2_3 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 1 2 0.0027 0.2 3.1 0.0 3 50 111 163 109 193 0.73 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_3 - 402 MipZ PF09140.6 261 1.4e-06 20.0 0.0 2 2 8.7e-07 6.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_11 - 325 AAA_2 PF07724.9 171 3.8e-06 19.4 0.0 1 1 1.2e-07 9.1e-06 18.1 0.0 6 131 32 152 30 181 0.85 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_11 - 325 AAA_16 PF13191.1 185 0.00019 13.9 0.1 1 1 7.2e-06 0.00053 12.5 0.0 18 64 21 69 10 126 0.78 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_9 - 303 adh_short PF00106.20 167 1.2e-34 112.1 0.1 1 1 2.1e-36 1.5e-34 111.8 0.1 3 166 60 225 58 226 0.97 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 223 AAA_13 PF13166.1 712 0.002 9.1 20.8 1 2 8.6e-07 6.3e-05 14.0 12.3 333 457 6 132 3 140 0.91 # 10693 # 11361 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_12 - 223 AAA_13 PF13166.1 712 0.002 9.1 20.8 2 2 0.012 0.88 0.3 1.2 366 397 169 201 149 222 0.35 # 10693 # 11361 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 2_3 - 402 CbiA PF01656.18 195 1.1e-18 59.8 0.0 1 1 2.8e-20 2.1e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_12 - 129 Ribosomal_S20p PF01649.13 84 0.00021 14.2 0.1 1 1 4.8e-06 0.00036 13.4 0.1 6 59 56 109 53 118 0.75 # 10669 # 11055 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_11 - 325 AAA PF00004.24 132 1.2e-05 18.1 0.0 1 1 3.4e-07 2.5e-05 17.0 0.0 1 125 32 167 32 171 0.73 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_9 - 303 KR PF08659.5 181 7.1e-14 44.3 0.0 1 1 1.3e-15 9.7e-14 43.9 0.0 3 174 60 236 59 242 0.81 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_11 - 325 Sigma54_activat PF00158.21 168 1.8e-64 208.7 0.0 1 1 3.6e-66 2.7e-64 208.2 0.0 2 163 9 170 8 175 0.98 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 2_3 - 402 AAA_31 PF13614.1 157 7e-05 15.3 0.0 1 1 5.5e-06 0.0004 12.8 0.0 108 147 235 273 230 279 0.86 # 1727 # 2932 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 303 adh_short_C2 PF13561.1 241 1.9e-30 98.8 0.0 1 1 3e-32 2.2e-30 98.6 0.0 5 239 66 298 63 300 0.95 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_9 - 303 Epimerase PF01370.16 236 1e-06 20.8 0.0 1 1 1.9e-08 1.4e-06 20.4 0.0 1 157 60 224 60 238 0.80 # 7817 # 8725 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_11 - 325 Sigma54_activ_2 PF14532.1 138 4.5e-25 80.8 0.0 1 1 2.2e-26 1.6e-24 79.0 0.0 1 138 9 179 9 179 0.90 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_5 - 131 BOF PF04076.8 103 4.4e-34 109.0 0.0 1 1 7.4e-36 5.4e-34 108.7 0.0 4 103 30 130 26 130 0.97 # 5631 # 6023 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.468 1_11 - 325 AAA_5 PF07728.9 139 1.7e-09 30.0 0.0 1 1 3.8e-11 2.8e-09 29.3 0.0 1 123 31 150 31 169 0.81 # 9548 # 10522 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c62f368a-6b89-41a5-a05a-73089afb1659 # Target file: checkm_output/bins/pm1081/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1081/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c62f368a-6b89-41a5-a05a-73089afb1659 checkm_output/bins/pm1081/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:06 2020 # [ok]