# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 170 Limkain-b1 PF11608.3 91 0.00084 12.8 0.1 1 1 8.7e-06 0.0016 12.0 0.1 16 70 90 144 80 151 0.89 # 3607 # 4116 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 10_3 - 181 cobW PF02492.14 178 0.0015 11.7 0.0 1 1 1.3e-05 0.0024 11.1 0.0 2 22 2 22 1 30 0.79 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_17 - 402 MipZ PF09140.6 261 3.4e-06 20.0 0.0 1 2 0.0027 0.48 3.1 0.0 3 50 111 163 109 193 0.73 # 10085 # 11290 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_17 - 402 MipZ PF09140.6 261 3.4e-06 20.0 0.0 2 2 8.7e-07 0.00016 14.6 0.0 87 136 233 282 220 296 0.87 # 10085 # 11290 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_6 - 565 3HCDH_N PF02737.13 180 0.0057 10.0 6.4 1 2 0.0047 0.85 2.9 2.4 1 30 99 128 99 134 0.93 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 3HCDH_N PF02737.13 180 0.0057 10.0 6.4 2 2 9e-05 0.016 8.6 0.1 2 39 272 309 271 348 0.73 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 GIDA PF01134.17 392 4.6e-08 26.0 6.6 1 3 3.5e-10 6.2e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 GIDA PF01134.17 392 4.6e-08 26.0 6.6 2 3 0.038 6.8 -0.9 0.0 3 31 273 301 271 315 0.84 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 GIDA PF01134.17 392 4.6e-08 26.0 6.6 3 3 0.018 3.3 0.1 0.1 349 385 393 429 387 433 0.77 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_55 - 145 SSB PF00436.20 104 5.9e-32 103.4 0.2 1 1 3.8e-34 6.8e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 35535 # 35969 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 3_6 - 565 Pyr_redox_2 PF07992.9 201 1.4e-43 142.8 0.0 1 1 3.2e-45 5.8e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_65 - 388 DUF87 PF01935.12 229 0.00016 15.2 0.0 1 1 1.8e-06 0.00033 14.2 0.0 28 45 157 174 155 188 0.89 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 5_3 - 303 AAA_22 PF13401.1 131 7.4e-17 55.5 0.0 1 1 3.1e-18 1.4e-16 54.6 0.0 7 126 64 190 59 194 0.94 # 982 # 1890 # 1 # ID=5_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_65 - 388 AAA_22 PF13401.1 131 5.2e-06 20.4 0.0 1 1 2.9e-07 1.3e-05 19.1 0.0 4 30 152 178 149 243 0.84 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 AAA_22 PF13401.1 131 3e-05 17.9 0.0 1 1 1.3e-06 5.9e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_78 - 1017 AAA_22 PF13401.1 131 0.00035 14.4 0.0 1 1 2.7e-05 0.0012 12.7 0.0 8 73 492 561 486 594 0.70 # 53016 # 56066 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_65 - 388 ATP_bind_1 PF03029.12 238 0.0015 11.8 0.0 1 1 1.3e-05 0.0024 11.2 0.0 1 25 157 181 157 191 0.84 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_6 - 565 DFP PF04127.10 185 0.0014 12.0 2.4 1 2 0.00039 0.071 6.4 0.4 28 51 105 128 99 156 0.83 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DFP PF04127.10 185 0.0014 12.0 2.4 2 2 0.0014 0.25 4.7 0.1 32 53 281 302 276 336 0.77 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_5 - 478 DNA_methylase PF00145.12 335 4e-79 259.8 0.0 1 1 4.4e-81 8e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 3520 # 4953 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 3_6 - 565 NAD_binding_7 PF13241.1 103 6.1e-07 23.4 1.2 1 2 5.4e-05 0.0097 9.9 0.2 9 38 99 128 96 184 0.89 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_7 PF13241.1 103 6.1e-07 23.4 1.2 2 2 1.4e-05 0.0025 11.8 0.1 8 41 270 306 264 380 0.74 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 10_3 - 181 AAA_17 PF13207.1 121 1.1e-06 23.2 0.1 1 1 2.3e-08 2.1e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_78 - 1017 AAA_17 PF13207.1 121 9e-05 17.0 0.1 1 1 8.5e-06 0.00076 14.0 0.0 3 27 492 522 492 581 0.72 # 53016 # 56066 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_65 - 388 Miro PF08477.8 119 0.0017 12.6 0.0 1 1 2.1e-05 0.0038 11.5 0.0 4 28 157 186 156 220 0.72 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 388 MobB PF03205.9 140 0.0009 12.7 0.0 1 1 1e-05 0.0019 11.7 0.0 4 25 156 177 154 190 0.85 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 388 T2SE PF00437.15 272 5.1e-23 75.0 0.0 1 1 4.6e-25 8.3e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00083 13.0 0.0 1 2 6.6e-05 0.012 9.3 0.0 1 23 2 24 2 46 0.78 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00083 13.0 0.0 2 2 0.015 2.7 1.6 0.0 112 135 99 122 91 136 0.77 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 Zeta_toxin PF06414.7 201 8.1e-05 15.5 0.0 1 2 4.7e-06 0.00084 12.2 0.0 19 53 3 35 1 120 0.83 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 Zeta_toxin PF06414.7 201 8.1e-05 15.5 0.0 2 2 0.024 4.3 0.1 0.0 45 74 106 133 95 150 0.73 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 3_6 - 565 NAD_binding_8 PF13450.1 68 6.3e-05 16.7 1.2 1 2 3.5e-07 6.3e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_8 PF13450.1 68 6.3e-05 16.7 1.2 2 2 0.041 7.3 0.5 0.2 1 25 274 298 274 303 0.81 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 F420_oxidored PF03807.12 96 0.013 9.7 4.1 1 2 0.0023 0.42 4.9 1.2 2 31 100 126 99 131 0.87 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 F420_oxidored PF03807.12 96 0.013 9.7 4.1 2 2 0.0075 1.3 3.3 0.1 1 34 271 300 271 323 0.87 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_65 - 388 SMC_N PF02463.14 220 0.0021 11.0 0.0 1 1 2.1e-05 0.0038 10.2 0.0 26 50 154 178 147 195 0.81 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 5_3 - 303 AAA_16 PF13191.1 185 2.9e-05 17.8 0.0 1 1 4.9e-06 0.00044 14.0 0.0 8 103 45 145 43 186 0.62 # 982 # 1890 # 1 # ID=5_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_65 - 388 AAA_16 PF13191.1 185 0.0016 12.2 0.0 1 1 3.6e-05 0.0032 11.2 0.0 26 50 154 178 140 211 0.85 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 388 AAA_23 PF13476.1 202 3.6e-06 21.2 0.1 1 1 4.2e-08 7.4e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 AAA_18 PF13238.1 129 1.2e-10 35.5 0.0 1 1 2.4e-12 2.1e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_78 - 1017 AAA_18 PF13238.1 129 0.00015 15.8 1.3 1 1 7.1e-06 0.00063 13.8 0.0 2 19 492 509 492 571 0.76 # 53016 # 56066 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 2_17 - 402 CbiA PF01656.18 195 2.7e-18 59.8 0.0 1 1 2.8e-20 5e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 10085 # 11290 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_65 - 388 KaiC PF06745.8 227 0.0015 11.4 0.0 1 1 1.5e-05 0.0026 10.6 0.0 14 59 147 191 137 201 0.76 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 AAA_14 PF13173.1 128 0.0011 12.7 0.0 1 1 1.1e-05 0.002 11.7 0.0 4 27 2 25 1 54 0.79 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 3_6 - 565 HI0933_like PF03486.9 409 4e-08 25.8 3.7 1 2 1.2e-06 0.00021 13.5 2.5 2 33 99 130 98 138 0.91 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 HI0933_like PF03486.9 409 4e-08 25.8 3.7 2 2 7.2e-06 0.0013 10.9 0.0 82 164 284 366 276 385 0.83 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_65 - 388 AAA_29 PF13555.1 62 1.6e-05 18.1 0.1 1 1 2.2e-07 3.9e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_6 - 565 FAD_binding_2 PF00890.19 417 7.7e-06 18.6 4.7 1 3 4.3e-08 7.7e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 FAD_binding_2 PF00890.19 417 7.7e-06 18.6 4.7 2 3 0.034 6.1 -0.8 0.1 143 204 311 369 297 388 0.72 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 FAD_binding_2 PF00890.19 417 7.7e-06 18.6 4.7 3 3 0.074 13 -1.9 0.0 376 402 388 408 377 424 0.82 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_25 - 137 Ribosomal_L20 PF00453.13 108 0.00069 13.3 0.0 1 1 5.9e-06 0.0011 12.7 0.0 46 98 39 92 28 99 0.92 # 19511 # 19921 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.504 3_6 - 565 Pyr_redox_3 PF13738.1 203 2.3e-17 57.4 0.1 1 2 4.4e-14 8e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 Pyr_redox_3 PF13738.1 203 2.3e-17 57.4 0.1 2 2 9e-07 0.00016 15.5 0.0 93 147 320 375 309 430 0.76 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_3 - 303 TniB PF05621.6 302 8.7e-213 698.1 6.2 1 1 5.4e-215 9.7e-213 697.9 6.2 1 302 1 302 1 302 1.00 # 982 # 1890 # 1 # ID=5_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_65 - 388 Ribosomal_S5 PF00333.15 67 5.4e-05 16.7 0.1 1 2 0.00091 0.16 5.5 0.0 26 45 84 103 76 114 0.83 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 388 Ribosomal_S5 PF00333.15 67 5.4e-05 16.7 0.1 2 2 0.00012 0.021 8.4 0.0 21 54 242 274 230 278 0.91 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_4 - 696 TraG-D_C PF12696.2 128 0.00024 14.7 0.1 1 1 2.4e-06 0.00042 13.9 0.1 3 94 437 524 435 556 0.78 # 4164 # 6251 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_17 - 402 AAA_31 PF13614.1 157 0.00017 15.3 0.0 1 1 5.5e-06 0.00098 12.8 0.0 108 147 235 273 230 279 0.86 # 10085 # 11290 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 10_3 - 181 AAA_33 PF13671.1 143 1e-10 35.4 0.0 1 1 7.3e-13 1.3e-10 35.0 0.0 2 127 3 130 2 151 0.75 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_65 - 388 FtsK_SpoIIIE PF01580.13 205 0.00018 14.8 0.0 1 1 1.9e-06 0.00034 13.8 0.0 41 59 155 173 129 184 0.85 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 388 ABC_tran PF00005.22 137 0.00025 15.1 0.0 1 1 2.7e-06 0.00047 14.2 0.0 16 33 157 174 149 217 0.83 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_6 - 565 K_oxygenase PF13434.1 341 1e-05 18.3 0.0 1 3 0.0039 0.71 2.4 0.0 187 220 94 125 59 130 0.79 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 K_oxygenase PF13434.1 341 1e-05 18.3 0.0 2 3 3.3e-06 0.0006 12.5 0.0 132 231 218 308 202 332 0.82 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 K_oxygenase PF13434.1 341 1e-05 18.3 0.0 3 3 0.057 10 -1.4 0.0 132 160 346 369 314 377 0.67 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 10_3 - 181 TIGR03263 TIGR03263 180 0.0013 11.8 0.0 1 1 1.6e-05 0.0029 10.7 0.0 3 26 2 25 1 31 0.81 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 AAA_19 PF13245.1 76 0.00042 13.8 0.0 1 1 1.6e-05 0.0015 12.1 0.0 15 33 5 22 2 38 0.84 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_78 - 1017 AAA_19 PF13245.1 76 0.00091 12.7 0.0 1 1 3.2e-05 0.0029 11.1 0.0 14 31 492 508 481 518 0.90 # 53016 # 56066 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_78 - 1017 AAA_10 PF12846.2 304 1.6e-40 133.1 0.0 1 1 5.5e-42 3.3e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 53016 # 56066 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_4 - 696 AAA_10 PF12846.2 304 1.1e-09 31.8 0.0 1 1 2.8e-11 1.7e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 4164 # 6251 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_65 - 388 AAA_10 PF12846.2 304 2.6e-06 20.8 0.0 1 1 2.5e-07 1.5e-05 18.3 0.0 3 27 154 178 152 196 0.74 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 3_6 - 565 FAD_oxidored PF12831.2 428 5.2e-06 19.4 3.6 1 1 2.9e-08 5.2e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DAO PF01266.19 358 7.6e-09 28.6 11.7 1 3 1.4e-08 2.4e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DAO PF01266.19 358 7.6e-09 28.6 11.7 2 3 0.032 5.7 -0.6 0.1 3 31 273 301 271 307 0.75 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DAO PF01266.19 358 7.6e-09 28.6 11.7 3 3 9.4e-07 0.00017 14.3 0.5 152 208 314 372 307 433 0.74 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_78 - 1017 DUF2075 PF09848.4 352 0.00063 12.5 0.0 1 1 1.1e-05 0.002 10.8 0.0 5 22 492 509 489 537 0.87 # 53016 # 56066 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 3_6 - 565 NAD_binding_9 PF13454.1 156 5.1e-05 16.8 2.8 1 3 0.0081 1.5 2.3 0.1 1 41 101 135 101 162 0.81 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_9 PF13454.1 156 5.1e-05 16.8 2.8 2 3 0.034 6 0.3 0.0 134 155 218 241 202 242 0.72 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_9 PF13454.1 156 5.1e-05 16.8 2.8 3 3 6.6e-06 0.0012 12.4 0.1 112 155 321 366 311 367 0.85 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 Pyr_redox PF00070.22 80 6.4e-20 65.1 6.0 1 2 1.4e-06 0.00026 15.2 1.5 1 31 99 129 99 131 0.96 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 Pyr_redox PF00070.22 80 6.4e-20 65.1 6.0 2 2 6.2e-18 1.1e-15 51.6 0.2 1 74 271 345 271 354 0.90 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_46 - 287 Methyltransf_27 PF13708.1 194 3.5e-69 225.9 0.0 1 1 3.3e-71 5.8e-69 225.2 0.0 2 194 89 282 88 282 0.98 # 31007 # 31867 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_4 - 696 TrwB_AAD_bind PF10412.4 386 3.3e-06 19.6 0.9 1 3 1.7e-05 0.0031 9.8 0.0 16 36 134 154 125 158 0.88 # 4164 # 6251 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_4 - 696 TrwB_AAD_bind PF10412.4 386 3.3e-06 19.6 0.9 2 3 9.3e-05 0.017 7.4 0.1 93 140 235 281 229 303 0.80 # 4164 # 6251 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_4 - 696 TrwB_AAD_bind PF10412.4 386 3.3e-06 19.6 0.9 3 3 0.083 15 -2.3 0.0 293 323 482 512 405 546 0.58 # 4164 # 6251 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 5_3 - 303 AAA_32 PF13654.1 509 0.00014 14.3 0.0 1 2 7.3e-06 0.0013 11.1 0.0 8 81 34 112 26 124 0.86 # 982 # 1890 # 1 # ID=5_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 5_3 - 303 AAA_32 PF13654.1 509 0.00014 14.3 0.0 2 2 0.0097 1.7 0.8 0.0 472 503 255 286 241 291 0.90 # 982 # 1890 # 1 # ID=5_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_65 - 388 GTP_EFTU PF00009.22 188 0.0019 11.4 0.0 1 1 2e-05 0.0035 10.5 0.0 8 34 157 183 155 195 0.87 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 RNA_helicase PF00910.17 107 0.001 13.0 0.0 1 1 1.8e-05 0.0016 12.3 0.0 1 26 3 28 3 47 0.84 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_65 - 388 RNA_helicase PF00910.17 107 0.002 12.1 0.0 1 1 4.9e-05 0.0044 10.9 0.0 3 26 157 180 156 197 0.81 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 UPF0079 PF02367.12 123 0.00036 13.9 0.0 1 1 3.3e-06 0.00059 13.2 0.0 17 36 2 21 1 30 0.88 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 3_6 - 565 AlaDh_PNT_C PF01262.16 168 4.3e-05 16.9 3.1 1 2 0.00051 0.092 6.0 0.8 15 50 92 127 89 130 0.90 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 AlaDh_PNT_C PF01262.16 168 4.3e-05 16.9 3.1 2 2 2.1e-05 0.0038 10.5 0.1 16 58 265 307 257 339 0.84 # 2393 # 4087 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 10_3 - 181 AAA_24 PF13479.1 213 0.00013 15.3 0.0 1 1 1.4e-06 0.00025 14.4 0.0 6 33 3 34 1 73 0.90 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 NACHT PF05729.7 166 2.7e-05 17.6 0.0 1 2 1.5e-06 0.00014 15.3 0.0 2 22 2 22 1 37 0.89 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 NACHT PF05729.7 166 2.7e-05 17.6 0.0 2 2 0.091 8.1 -0.2 0.0 77 91 151 177 95 179 0.61 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_65 - 388 NACHT PF05729.7 166 0.0006 13.2 0.0 1 1 1.3e-05 0.0012 12.3 0.0 4 29 156 181 154 188 0.83 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 388 AAA_25 PF13481.1 194 1e-05 18.7 0.0 1 1 1.3e-07 2.3e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 41733 # 42896 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 10_3 - 181 AAA_28 PF13521.1 163 0.00024 14.8 0.0 1 1 2.9e-06 0.00052 13.7 0.0 2 30 3 34 2 165 0.89 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 APS_kinase PF01583.15 157 2.5e-05 17.7 0.0 1 2 7.3e-06 0.0013 12.1 0.0 4 24 2 22 1 35 0.87 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 10_3 - 181 APS_kinase PF01583.15 157 2.5e-05 17.7 0.0 2 2 0.0032 0.58 3.5 0.1 34 73 107 148 95 160 0.86 # 1036 # 1578 # 1 # ID=10_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e568a8a4-2bca-4510-b8a1-67849afc27b4 # Target file: checkm_output/bins/pm1080/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1080/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e568a8a4-2bca-4510-b8a1-67849afc27b4 checkm_output/bins/pm1080/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:06 2020 # [ok]