# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_62 - 234 UPF0020 PF01170.13 180 4.8e-06 19.2 0.0 1 2 5.2e-05 0.0052 9.2 0.0 103 120 17 34 5 78 0.84 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_62 - 234 UPF0020 PF01170.13 180 4.8e-06 19.2 0.0 2 2 0.00013 0.013 8.0 0.0 28 46 170 188 165 221 0.82 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_69 - 216 MipZ PF09140.6 261 2.9e-17 55.5 0.6 1 2 2.9e-16 2.9e-14 45.6 0.4 2 143 2 123 1 132 0.85 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_69 - 216 MipZ PF09140.6 261 2.9e-17 55.5 0.6 2 2 0.0094 0.94 1.3 0.0 214 235 177 198 171 209 0.82 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_53 - 186 SSB PF00436.20 104 1.6e-41 133.3 0.2 1 1 2e-43 2e-41 133.0 0.2 1 99 6 105 6 113 0.95 # 46056 # 46613 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_5 - 1753 UvrD_C_2 PF13538.1 104 9.7e-08 25.1 0.1 1 1 1.5e-08 7.5e-07 22.2 0.0 3 102 1339 1442 1337 1444 0.79 # 2913 # 8171 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_98 - 327 UvrD_C_2 PF13538.1 104 0.00032 13.8 0.0 1 1 4.4e-05 0.0022 11.1 0.0 70 103 137 171 83 171 0.86 # 83353 # 84333 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 1_23 - 880 DUF87 PF01935.12 229 5.8e-06 19.1 0.0 1 1 2.2e-07 2.2e-05 17.2 0.0 26 222 484 674 481 681 0.79 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_75 - 478 DNA_methylase PF00145.12 335 6.6e-80 261.6 0.0 1 1 1.4e-81 1.4e-79 260.5 0.0 1 331 96 457 96 460 0.86 # 62593 # 64026 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.515 1_69 - 216 SRP54 PF00448.17 196 1.1e-07 24.4 0.2 1 1 1.6e-09 1.6e-07 23.8 0.2 6 98 4 93 1 106 0.87 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_62 - 234 N6_N4_Mtase PF01555.13 231 1.9e-33 108.8 0.0 1 2 4.7e-14 4.7e-12 38.7 0.0 1 113 21 130 21 140 0.86 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_62 - 234 N6_N4_Mtase PF01555.13 231 1.9e-33 108.8 0.0 2 2 4.6e-23 4.6e-21 68.2 0.0 170 227 149 206 135 209 0.93 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_72 - 918 AAA_21 PF13304.1 303 4.4e-11 36.1 1.1 1 2 0.0022 0.22 4.3 0.0 2 82 295 374 294 413 0.88 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_72 - 918 AAA_21 PF13304.1 303 4.4e-11 36.1 1.1 2 2 2.5e-11 2.5e-09 30.4 0.2 219 302 741 859 608 861 0.66 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_23 - 880 MobB PF03205.9 140 0.00072 12.2 0.0 1 2 0.095 9.5 -1.2 0.0 38 91 112 160 106 198 0.78 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_23 - 880 MobB PF03205.9 140 0.00072 12.2 0.0 2 2 5.4e-05 0.0054 9.3 0.0 3 28 484 509 482 523 0.86 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_69 - 216 ArsA_ATPase PF02374.10 305 1.7e-05 16.9 1.0 1 2 1.9e-05 0.0019 10.1 0.5 7 38 7 38 1 47 0.87 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_69 - 216 ArsA_ATPase PF02374.10 305 1.7e-05 16.9 1.0 2 2 0.00054 0.054 5.4 0.0 100 135 50 87 37 90 0.87 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_72 - 918 SMC_N PF02463.14 220 7.5e-08 24.7 0.2 1 2 0.00059 0.059 5.5 0.0 2 46 269 314 268 380 0.84 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_72 - 918 SMC_N PF02463.14 220 7.5e-08 24.7 0.2 2 2 1.3e-07 1.3e-05 17.4 0.1 135 207 603 864 401 877 0.68 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_69 - 216 VirC1 PF07015.6 231 3.8e-09 28.8 0.1 1 1 5.4e-11 5.4e-09 28.3 0.1 6 150 5 144 1 212 0.77 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_69 - 216 Fer4_NifH PF00142.13 273 1.4e-05 17.3 0.2 1 1 3.5e-07 3.5e-05 16.0 0.1 8 39 9 40 1 49 0.85 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_6 - 773 AAA_16 PF13191.1 185 3.7e-06 19.9 0.0 1 1 1.3e-07 1.3e-05 18.1 0.0 20 57 181 219 179 262 0.74 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_72 - 918 AAA_23 PF13476.1 202 3e-08 27.1 11.0 1 1 1e-08 1e-06 22.1 10.9 12 177 285 488 277 740 0.67 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_69 - 216 CbiA PF01656.18 195 9.5e-22 70.2 0.0 1 1 1.2e-23 1.2e-21 69.9 0.0 2 144 4 128 3 184 0.78 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_39 - 278 N6_Mtase PF02384.11 311 1.8e-12 39.8 0.0 1 1 3.2e-14 3.2e-12 39.0 0.0 25 118 139 238 132 270 0.82 # 37138 # 37971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_6 - 773 TraG-D_C PF12696.2 128 6.2e-20 64.3 0.0 1 1 1.6e-21 1.6e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_69 - 216 AAA_31 PF13614.1 157 2.3e-09 30.3 0.2 1 3 4.6e-08 4.6e-06 19.5 0.0 3 42 3 42 1 47 0.89 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_69 - 216 AAA_31 PF13614.1 157 2.3e-09 30.3 0.2 2 3 0.00031 0.031 7.1 0.0 107 137 68 97 58 108 0.77 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_69 - 216 AAA_31 PF13614.1 157 2.3e-09 30.3 0.2 3 3 0.055 5.5 -0.2 0.0 87 114 183 210 130 213 0.78 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_62 - 234 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.2 1 2 7e-07 3.5e-05 16.8 0.0 63 113 13 70 3 75 0.70 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_62 - 234 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.2 2 2 1.5e-07 7.5e-06 18.9 0.1 4 46 174 215 171 228 0.82 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_39 - 278 Methyltransf_26 PF13659.1 117 0.00026 13.9 0.1 1 1 1.4e-05 0.0007 12.6 0.0 3 67 171 240 170 269 0.79 # 37138 # 37971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_5 - 1753 AAA_30 PF13604.1 196 1.7e-42 138.1 14.0 1 2 8.9e-07 8.9e-05 15.0 1.9 9 126 423 535 421 560 0.86 # 2913 # 8171 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_5 - 1753 AAA_30 PF13604.1 196 1.7e-42 138.1 14.0 2 2 4.8e-42 4.8e-40 130.1 0.9 2 186 970 1157 969 1161 0.95 # 2913 # 8171 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_23 - 880 FtsK_SpoIIIE PF01580.13 205 0.00012 14.5 0.0 1 1 2.8e-06 0.00028 13.3 0.0 39 63 478 506 459 508 0.85 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_72 - 918 ABC_tran PF00005.22 137 0.00037 13.7 0.7 1 2 0.00014 0.014 8.6 0.3 15 51 296 332 285 500 0.84 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_72 - 918 ABC_tran PF00005.22 137 0.00037 13.7 0.7 2 2 0.021 2.1 1.6 0.0 104 135 792 823 684 825 0.54 # 58283 # 61036 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 1_62 - 234 Cons_hypoth95 PF03602.10 183 8.5e-06 18.1 0.0 1 2 0.00025 0.012 7.8 0.0 113 170 19 78 12 86 0.73 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_62 - 234 Cons_hypoth95 PF03602.10 183 8.5e-06 18.1 0.0 2 2 0.00019 0.0094 8.2 0.0 35 59 163 187 145 203 0.76 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_75 - 478 Cons_hypoth95 PF03602.10 183 0.00027 13.3 0.0 1 1 1.4e-05 0.00072 11.9 0.0 44 89 96 141 87 169 0.80 # 62593 # 64026 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.515 1_5 - 1753 AAA_19 PF13245.1 76 5.2e-06 19.1 0.8 1 1 2.3e-07 2.3e-05 17.1 0.8 10 75 986 1047 979 1048 0.70 # 2913 # 8171 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_23 - 880 AAA_10 PF12846.2 304 2.4e-45 148.1 0.0 1 1 7.7e-47 3.8e-45 147.4 0.0 1 294 481 773 481 779 0.86 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_6 - 773 AAA_10 PF12846.2 304 4.1e-09 29.1 0.0 1 2 1.1e-05 0.00054 12.3 0.0 3 43 187 227 186 249 0.92 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_6 - 773 AAA_10 PF12846.2 304 4.1e-09 29.1 0.0 2 2 2.1e-06 0.0001 14.7 0.0 207 296 404 494 294 499 0.85 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_69 - 216 DAO PF01266.19 358 0.00093 11.0 0.0 1 1 1.2e-05 0.0012 10.6 0.0 14 111 21 137 16 192 0.84 # 55530 # 56177 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_44 - 292 Methyltransf_27 PF13708.1 194 1.6e-63 206.6 0.0 1 1 2.1e-65 2.1e-63 206.2 0.0 5 194 95 287 91 287 0.93 # 39898 # 40773 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_6 - 773 TrwB_AAD_bind PF10412.4 386 1.4e-148 487.4 0.0 1 1 3.6e-150 1.8e-148 487.1 0.0 2 386 172 561 171 561 0.99 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_23 - 880 TrwB_AAD_bind PF10412.4 386 1.1e-05 17.1 0.1 1 1 5.6e-07 2.8e-05 15.7 0.0 16 96 482 558 474 569 0.76 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_6 - 773 T4SS-DNA_transf PF02534.9 469 7.2e-09 27.5 0.0 1 2 0.034 3.4 -1.1 0.0 128 200 260 331 252 355 0.73 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_6 - 773 T4SS-DNA_transf PF02534.9 469 7.2e-09 27.5 0.0 2 2 2.8e-10 2.8e-08 25.6 0.0 276 394 391 508 377 564 0.76 # 8171 # 10489 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_23 - 880 Pox_A32 PF04665.7 241 0.00013 14.2 0.0 1 1 2.7e-06 0.00027 13.2 0.0 6 40 474 508 470 523 0.81 # 24107 # 26746 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_62 - 234 Methyltransf_15 PF09445.5 164 0.00093 11.7 0.1 1 2 0.023 2.3 0.6 0.0 53 80 4 30 2 38 0.91 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_62 - 234 Methyltransf_15 PF09445.5 164 0.00093 11.7 0.1 2 2 8.8e-05 0.0088 8.5 0.0 3 30 173 200 171 208 0.90 # 51216 # 51917 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fa6ffb6d-94e5-4368-9abe-ef539170bcfc # Target file: checkm_output/bins/pm1068/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1068/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa6ffb6d-94e5-4368-9abe-ef539170bcfc checkm_output/bins/pm1068/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:53:00 2020 # [ok]