# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_3 - 144 Mg_chelatase PF01078.16 207 0.0002 13.2 0.0 1 1 3.7e-06 0.0003 12.6 0.0 23 42 98 117 84 127 0.89 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 IstB_IS21 PF01695.12 178 1.2e-33 108.5 0.1 1 2 0.014 1.1 1.2 0.2 83 111 4 32 2 33 0.89 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 IstB_IS21 PF01695.12 178 1.2e-33 108.5 0.1 2 2 1.7e-34 1.4e-32 105.2 0.0 1 84 51 134 51 141 0.96 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_14 - 389 MipZ PF09140.6 261 1.5e-06 20.0 0.1 1 2 8.4e-08 6.8e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_14 - 389 MipZ PF09140.6 261 1.5e-06 20.0 0.1 2 2 0.043 3.5 -0.8 0.0 88 128 224 264 211 274 0.76 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 3_1 - 153 UvrD_C_2 PF13538.1 104 2.7e-05 16.9 0.0 1 1 4.8e-07 3.9e-05 16.4 0.0 2 80 58 140 57 152 0.71 # 252 # 710 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_25 - 440 DUF87 PF01935.12 229 4.9e-05 15.8 0.2 1 1 1.3e-06 0.00011 14.7 0.2 24 47 163 186 162 193 0.91 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_3 - 144 AAA_22 PF13401.1 131 0.00041 13.1 0.1 1 1 1.2e-05 0.00096 11.9 0.0 7 24 100 117 96 138 0.85 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 1 2 0.025 2.1 1.9 0.0 20 53 8 46 4 89 0.61 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 2 2 1.8e-06 0.00014 15.3 0.0 2 20 100 118 99 136 0.80 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_14 - 389 ArsA_ATPase PF02374.10 305 1.4e-06 20.1 0.0 1 2 2.3e-06 9.3e-05 14.1 0.0 9 40 115 147 109 154 0.90 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_14 - 389 ArsA_ATPase PF02374.10 305 1.4e-06 20.1 0.0 2 2 0.0044 0.18 3.4 0.0 125 136 233 244 223 252 0.89 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_3 - 144 ArsA_ATPase PF02374.10 305 6.2e-05 14.7 0.0 1 1 2.6e-06 0.0001 14.0 0.0 6 34 102 130 98 133 0.87 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 PhoH PF02562.11 205 3.4e-06 19.0 0.0 1 1 6.4e-08 5.2e-06 18.4 0.0 20 47 98 125 82 141 0.86 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_14 - 389 VirC1 PF07015.6 231 8e-06 17.6 0.1 1 2 2.5e-05 0.002 9.8 0.0 4 42 109 147 107 153 0.91 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_14 - 389 VirC1 PF07015.6 231 8e-06 17.6 0.1 2 2 0.00054 0.044 5.4 0.0 100 139 251 290 218 321 0.72 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 1_25 - 440 Arch_ATPase PF01637.13 234 0.00068 11.9 0.0 1 1 1.4e-05 0.0011 11.3 0.0 30 131 172 265 150 273 0.79 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_3 - 144 AAA_16 PF13191.1 185 8.5e-07 21.7 0.1 1 2 0.0025 0.2 4.2 0.0 121 174 19 89 2 97 0.61 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_16 PF13191.1 185 8.5e-07 21.7 0.1 2 2 6.7e-07 5.4e-05 15.8 0.0 24 61 97 134 95 139 0.80 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_18 PF13238.1 129 0.00012 15.0 0.1 1 1 3.6e-06 0.0003 13.8 0.0 1 19 100 118 100 139 0.79 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_14 - 389 CbiA PF01656.18 195 5.3e-33 106.7 0.0 1 1 1.8e-34 7.2e-33 106.2 0.0 1 188 109 333 109 340 0.76 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_3 - 144 CbiA PF01656.18 195 2.8e-05 16.2 0.0 1 1 1.3e-06 5.5e-05 15.2 0.0 9 31 107 129 100 132 0.94 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA PF00004.24 132 6.1e-06 19.1 0.1 1 2 0.069 5.6 -0.2 0.0 23 53 31 61 4 67 0.66 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA PF00004.24 132 6.1e-06 19.1 0.1 2 2 3.3e-07 2.7e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_14 - 389 AAA_31 PF13614.1 157 2.5e-06 20.1 0.1 1 2 1.6e-05 0.00064 12.3 0.0 2 49 108 155 107 178 0.86 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_14 - 389 AAA_31 PF13614.1 157 2.5e-06 20.1 0.1 2 2 0.002 0.079 5.5 0.1 116 151 229 267 217 271 0.79 # 7613 # 8779 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 2_3 - 144 AAA_31 PF13614.1 157 0.00021 13.9 0.2 1 1 1.8e-05 0.00071 12.1 0.0 10 36 106 132 100 136 0.91 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_33 PF13671.1 143 0.00021 13.8 0.3 1 2 0.07 5.7 -0.6 0.0 44 44 39 39 4 77 0.46 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_33 PF13671.1 143 0.00021 13.8 0.3 2 2 8.7e-06 0.0007 12.1 0.1 2 19 100 117 100 129 0.85 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_25 - 440 AAA_30 PF13604.1 196 0.00038 12.7 0.7 1 3 0.063 5.1 -0.8 0.0 47 72 61 86 53 96 0.91 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_25 - 440 AAA_30 PF13604.1 196 0.00038 12.7 0.7 2 3 0.00015 0.012 7.8 0.1 16 63 160 204 155 214 0.70 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_25 - 440 AAA_30 PF13604.1 196 0.00038 12.7 0.7 3 3 0.014 1.1 1.4 0.0 16 70 225 275 213 277 0.76 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_25 - 440 ABC_tran PF00005.22 137 0.00026 13.9 0.1 1 1 8.6e-06 0.0007 12.5 0.1 6 35 157 186 155 209 0.91 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_25 - 440 ATP-synt_ab PF00006.20 215 1.9e-77 252.1 0.0 1 1 3.1e-79 2.5e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_3 - 144 RuvB_N PF05496.7 234 6.4e-05 14.7 0.0 1 1 1e-06 8.4e-05 14.3 0.0 48 70 95 117 69 137 0.86 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_19 PF13245.1 76 9.5e-08 24.4 0.2 1 2 0.068 5.5 -0.5 0.0 51 75 47 72 26 73 0.84 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_19 PF13245.1 76 9.5e-08 24.4 0.2 2 2 5.1e-09 4.1e-07 22.3 0.1 13 48 100 131 92 133 0.89 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_10 PF12846.2 304 0.0002 13.4 0.0 1 1 4.2e-06 0.00034 12.7 0.0 3 35 99 131 98 139 0.87 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 ArgK PF03308.11 267 0.00027 12.3 0.0 1 1 5.1e-06 0.00041 11.7 0.0 32 60 100 128 82 133 0.87 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_24 PF13479.1 213 0.00052 12.2 0.0 1 1 1e-05 0.00083 11.6 0.0 5 23 99 117 97 129 0.87 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 NACHT PF05729.7 166 0.00017 13.9 0.0 1 1 4.8e-06 0.00039 12.7 0.0 3 27 100 124 98 137 0.84 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_25 PF13481.1 194 5.2e-07 21.8 0.0 1 1 1.7e-08 6.9e-07 21.4 0.0 29 64 93 129 55 138 0.77 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_25 - 440 AAA_25 PF13481.1 194 2.9e-05 16.1 0.2 1 1 1.7e-06 6.8e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 19656 # 20975 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_3 - 144 AAA_28 PF13521.1 163 0.00016 14.3 0.0 1 2 0.049 4 -0.0 0.0 98 125 22 49 6 76 0.55 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_28 PF13521.1 163 0.00016 14.3 0.0 2 2 9.5e-06 0.00077 12.1 0.0 2 25 100 127 99 136 0.76 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_5 PF07728.9 139 3.4e-06 19.5 0.1 1 2 0.045 3.6 -0.1 0.0 91 126 13 49 3 61 0.52 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_3 - 144 AAA_5 PF07728.9 139 3.4e-06 19.5 0.1 2 2 2e-07 1.6e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 1013 # 1444 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e79368a2-4e26-4712-a2ad-5743bb841457 # Target file: checkm_output/bins/pm1065/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1065/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e79368a2-4e26-4712-a2ad-5743bb841457 checkm_output/bins/pm1065/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:55 2020 # [ok]