# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 247 Eno-Rase_NADH_b PF12242.3 78 0.00013 15.5 0.1 1 1 4.4e-06 0.00028 14.5 0.1 42 68 9 34 3 42 0.74 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 5_12 - 258 Eno-Rase_NADH_b PF12242.3 78 0.00014 15.5 0.1 1 1 9e-06 0.00056 13.5 0.2 37 65 6 32 1 44 0.77 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 6_6 - 247 Eno-Rase_NADH_b PF12242.3 78 0.00032 14.3 0.5 1 1 1.1e-05 0.00071 13.2 0.5 37 63 5 29 1 42 0.76 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_16 - 578 cobW PF02492.14 178 0.0012 12.1 0.0 1 1 1.1e-05 0.0021 11.3 0.0 5 25 190 212 187 237 0.79 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_4 - 218 Seryl_tRNA_N PF02403.17 108 2.4e-06 21.4 5.7 1 1 1.9e-08 3.6e-06 20.8 3.9 12 101 112 195 103 197 0.87 # 3120 # 3773 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 7_4 - 112 IstB_IS21 PF01695.12 178 2.4e-27 89.3 0.0 1 1 4.3e-29 2.7e-27 89.1 0.0 90 177 2 89 1 90 0.97 # 2106 # 2441 # 1 # ID=7_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.542 7_3 - 147 IstB_IS21 PF01695.12 178 4.4e-11 36.3 0.0 1 1 8.9e-13 5.5e-11 36.0 0.0 3 61 55 113 53 138 0.96 # 1687 # 2127 # 1 # ID=7_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_35 - 76 IstB_IS21 PF01695.12 178 0.00037 13.7 0.0 1 1 6e-06 0.00037 13.7 0.0 44 65 7 28 1 59 0.85 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_61 - 459 MipZ PF09140.6 261 4.6e-09 29.5 0.3 1 2 2.3e-05 0.0043 9.9 0.0 3 52 171 225 169 249 0.75 # 54428 # 55804 # -1 # ID=1_61;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.484 1_61 - 459 MipZ PF09140.6 261 4.6e-09 29.5 0.3 2 2 1.2e-07 2.3e-05 17.4 0.0 89 135 295 341 280 346 0.88 # 54428 # 55804 # -1 # ID=1_61;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.484 5_12 - 258 3HCDH_N PF02737.13 180 0.00066 13.1 1.2 1 2 9.4e-06 0.0018 11.7 0.5 6 70 15 80 9 94 0.79 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 5_12 - 258 3HCDH_N PF02737.13 180 0.00066 13.1 1.2 2 2 0.055 10 -0.5 0.0 12 30 169 187 162 231 0.71 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 2_44 - 421 CoaE PF01121.15 180 0.0012 12.1 0.0 1 1 1.3e-05 0.0025 11.0 0.0 3 25 66 88 64 94 0.90 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_59 - 184 SSB PF00436.20 104 5.3e-43 139.0 0.6 1 1 3.6e-45 6.8e-43 138.6 0.6 1 103 6 112 6 113 0.96 # 51832 # 52383 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_14 - 1739 UvrD_C_2 PF13538.1 104 7.5e-10 32.7 0.1 1 1 1.2e-11 2.3e-09 31.2 0.1 2 101 1331 1435 1330 1438 0.77 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_30 - 864 DUF87 PF01935.12 229 1.1e-06 22.3 0.0 1 1 1.7e-08 3.2e-06 20.9 0.0 26 216 477 658 474 670 0.69 # 28963 # 31554 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 76 NB-ARC PF00931.17 287 0.00093 11.9 0.0 1 1 1e-05 0.00099 11.8 0.0 21 46 12 38 3 68 0.85 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_16 - 578 NB-ARC PF00931.17 287 0.0012 11.4 0.0 1 1 2.1e-05 0.002 10.8 0.0 15 41 181 207 173 256 0.84 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_35 - 76 Septin PF00735.13 281 0.00011 15.1 0.0 1 1 6.8e-07 0.00013 14.8 0.0 4 49 10 56 8 66 0.65 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_35 - 76 AAA_22 PF13401.1 131 9.4e-06 19.6 0.0 1 1 1.7e-07 1.1e-05 19.4 0.0 3 37 9 58 5 73 0.71 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_44 - 421 AAA_22 PF13401.1 131 0.0003 14.7 0.0 1 2 0.00011 0.0067 10.4 0.0 7 34 66 93 60 146 0.78 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 2_44 - 421 AAA_22 PF13401.1 131 0.0003 14.7 0.0 2 2 0.05 3.1 1.7 0.0 72 121 248 305 219 311 0.69 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_16 - 578 AAA_22 PF13401.1 131 0.0016 12.4 0.0 1 1 7.2e-05 0.0045 10.9 0.0 8 30 189 211 183 247 0.78 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_7 - 222 YjeF_N PF03853.10 169 0.0015 12.0 0.0 1 2 0.00013 0.024 8.0 0.0 120 154 81 115 68 130 0.75 # 6076 # 6741 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 3_7 - 222 YjeF_N PF03853.10 169 0.0015 12.0 0.0 2 2 0.01 1.9 1.8 0.0 67 111 168 219 145 221 0.58 # 6076 # 6741 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 2_44 - 421 PRK PF00485.13 194 0.00083 12.7 0.2 1 2 0.036 6.8 -0.0 0.0 45 80 20 55 9 61 0.83 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 2_44 - 421 PRK PF00485.13 194 0.00083 12.7 0.2 2 2 3.1e-05 0.0057 10.0 0.1 2 29 66 93 65 121 0.81 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_16 - 578 AAA_17 PF13207.1 121 0.00023 15.8 0.0 1 1 8.5e-06 0.0008 14.0 0.0 3 62 189 242 187 268 0.64 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_44 - 421 AAA_17 PF13207.1 121 0.0003 15.4 0.0 1 1 1.1e-05 0.001 13.7 0.0 2 46 66 116 65 299 0.72 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_35 - 76 Miro PF08477.8 119 0.00026 15.3 0.0 1 1 3e-06 0.00028 15.2 0.0 2 34 13 45 12 67 0.77 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_44 - 421 Miro PF08477.8 119 0.00063 14.1 0.0 1 1 1.4e-05 0.0013 13.0 0.0 2 25 66 89 65 133 0.81 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_16 - 578 MobB PF03205.9 140 0.00033 14.2 0.0 1 1 4.2e-06 0.00078 13.0 0.0 6 33 191 218 187 224 0.86 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_35 - 76 PhoH PF02562.11 205 0.001 12.1 0.0 1 1 6.4e-06 0.0012 11.9 0.0 16 39 7 30 3 47 0.81 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_35 - 76 T2SE PF00437.15 272 0.00034 13.3 0.0 1 1 1.8e-06 0.00035 13.3 0.0 126 164 8 48 4 65 0.70 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_2 - 247 Shikimate_DH PF01488.15 135 0.0006 13.7 2.3 1 1 9.8e-06 0.0018 12.2 1.6 8 83 2 77 1 98 0.72 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_9 - 84 Cytidylate_kin2 PF13189.1 179 0.0007 13.3 0.4 1 1 4.1e-06 0.00078 13.2 0.4 111 153 39 81 26 83 0.84 # 5697 # 5948 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_61 - 459 Methyltransf_24 PF13578.1 106 0.00027 15.6 0.1 1 1 2.5e-05 0.0048 11.6 0.1 4 88 179 323 176 333 0.59 # 54428 # 55804 # -1 # ID=1_61;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.484 1_16 - 578 Arch_ATPase PF01637.13 234 0.0015 12.0 0.0 1 1 1.4e-05 0.0025 11.3 0.0 27 78 192 237 186 312 0.86 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_44 - 421 AAA_16 PF13191.1 185 5.9e-07 23.4 0.0 1 1 2.5e-08 1.2e-06 22.4 0.0 11 83 49 125 44 159 0.79 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_16 - 578 AAA_16 PF13191.1 185 5e-05 17.1 0.0 1 1 2.5e-06 0.00012 15.9 0.0 21 56 182 218 175 310 0.87 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_30 - 864 AAA_16 PF13191.1 185 0.00017 15.4 0.1 1 1 2e-05 0.00095 13.0 0.0 25 57 475 507 461 519 0.84 # 28963 # 31554 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 76 AAA_16 PF13191.1 185 0.00042 14.1 0.1 1 1 1.1e-05 0.00052 13.8 0.1 26 45 12 31 6 59 0.88 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_44 - 421 AAA_18 PF13238.1 129 0.0016 12.6 0.5 1 1 3.4e-05 0.0064 10.6 0.1 1 21 66 86 66 147 0.77 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 6_6 - 247 adh_short PF00106.20 167 5.5e-38 124.3 1.0 1 1 1.3e-39 7.9e-38 123.8 1.0 1 166 7 174 7 175 0.96 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_2 - 247 adh_short PF00106.20 167 1.2e-36 120.0 3.6 1 1 2.5e-38 1.6e-36 119.5 3.6 2 165 8 173 7 175 0.96 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 5_12 - 258 adh_short PF00106.20 167 5.8e-24 78.7 2.0 1 1 1.3e-25 8.3e-24 78.2 2.0 3 166 10 175 8 176 0.89 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_37 - 288 AAA_13 PF13166.1 712 0.021 7.0 5.0 1 1 0.00015 0.028 6.6 5.0 394 463 7 76 5 77 0.93 # 34112 # 34975 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.554 1_61 - 459 CbiA PF01656.18 195 2.3e-22 73.1 0.1 1 1 3.5e-24 6.6e-22 71.6 0.0 2 144 172 354 171 361 0.75 # 54428 # 55804 # -1 # ID=1_61;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.484 3_2 - 247 Polysacc_synt_2 PF02719.10 294 6.6e-05 15.7 1.0 1 1 4.4e-07 8.3e-05 15.3 1.0 1 116 9 126 9 170 0.78 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_35 - 76 KaiC PF06745.8 227 0.00064 12.7 0.0 1 1 4.1e-06 0.00076 12.4 0.0 14 43 5 35 2 63 0.71 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_44 - 421 AAA_14 PF13173.1 128 0.00016 15.4 0.1 1 1 4.1e-06 0.00078 13.2 0.0 4 44 65 104 62 204 0.79 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 2_44 - 421 AAA_29 PF13555.1 62 8.1e-05 16.0 0.0 1 1 9e-07 0.00017 14.9 0.0 22 42 62 82 49 92 0.76 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 3_2 - 247 KR PF08659.5 181 3.3e-18 59.8 1.1 1 1 7.2e-20 4.5e-18 59.3 1.1 2 161 8 168 8 206 0.88 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 6_6 - 247 KR PF08659.5 181 3e-17 56.6 0.4 1 1 6.5e-19 4.1e-17 56.2 0.4 2 149 8 156 7 192 0.86 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_12 - 258 KR PF08659.5 181 1.8e-11 37.8 2.3 1 1 5.9e-13 3.7e-11 36.8 2.3 4 162 11 170 9 190 0.79 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 76 Sigma54_activat PF00158.21 168 0.00011 15.5 0.0 1 1 6.6e-07 0.00012 15.3 0.0 20 47 8 35 3 60 0.77 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_4 - 218 Ribosomal_L10 PF00466.15 100 0.00029 14.6 0.2 1 2 0.0098 1.8 2.4 0.0 60 93 49 92 22 98 0.74 # 3120 # 3773 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 2_4 - 218 Ribosomal_L10 PF00466.15 100 0.00029 14.6 0.2 2 2 5e-05 0.0094 9.7 0.3 34 68 168 202 164 213 0.88 # 3120 # 3773 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 3_4 - 71 Ribosomal_S5 PF00333.15 67 0.00032 14.2 0.1 1 1 2.2e-06 0.00042 13.9 0.1 42 65 42 65 34 67 0.90 # 3247 # 3459 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_16 - 578 TraG-D_C PF12696.2 128 1.1e-22 74.0 0.0 1 1 2.7e-24 2.5e-22 72.9 0.0 1 127 420 542 420 543 0.83 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_35 - 76 TraG-D_C PF12696.2 128 0.00083 13.0 0.0 1 1 1.2e-05 0.0011 12.6 0.0 34 69 32 71 25 74 0.75 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_61 - 459 AAA_31 PF13614.1 157 8e-07 22.9 0.0 1 2 0.00012 0.023 8.4 0.0 9 63 177 236 170 271 0.75 # 54428 # 55804 # -1 # ID=1_61;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.484 1_61 - 459 AAA_31 PF13614.1 157 8e-07 22.9 0.0 2 2 9.4e-06 0.0018 12.0 0.0 108 146 295 332 294 338 0.82 # 54428 # 55804 # -1 # ID=1_61;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.484 2_44 - 421 NTPase_1 PF03266.10 168 0.00078 13.0 0.0 1 1 9.6e-06 0.0018 11.8 0.0 1 33 65 100 65 107 0.74 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_14 - 1739 AAA_30 PF13604.1 196 1.3e-42 139.4 13.7 1 2 0.0001 0.02 8.3 1.1 39 127 451 532 418 553 0.82 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_14 - 1739 AAA_30 PF13604.1 196 1.3e-42 139.4 13.7 2 2 3.8e-44 7.1e-42 137.0 2.1 2 186 957 1144 956 1148 0.93 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 2_44 - 421 FtsK_SpoIIIE PF01580.13 205 0.00036 13.8 0.0 1 1 5.7e-06 0.00054 13.3 0.0 30 81 53 105 19 119 0.83 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_30 - 864 FtsK_SpoIIIE PF01580.13 205 0.0023 11.2 0.1 1 1 0.00013 0.012 8.8 0.1 39 63 473 499 455 503 0.86 # 28963 # 31554 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_16 - 578 ABC_tran PF00005.22 137 0.00058 14.0 0.0 1 1 1.6e-05 0.001 13.2 0.0 12 42 186 216 183 339 0.89 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_44 - 421 ABC_tran PF00005.22 137 0.00063 13.9 0.0 1 1 1.6e-05 0.001 13.2 0.0 11 40 63 91 51 158 0.72 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_30 - 864 ABC_tran PF00005.22 137 0.0009 13.4 0.0 1 1 4.7e-05 0.0029 11.7 0.0 13 43 476 525 472 613 0.57 # 28963 # 31554 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_14 - 1739 AAA_19 PF13245.1 76 1.1e-06 22.2 0.2 1 1 5.2e-08 9.7e-06 19.1 0.2 9 75 972 1034 963 1035 0.76 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 6_5 - 344 Methyltransf_2 PF00891.13 242 2.4e-49 161.4 0.0 1 1 1.8e-51 3.3e-49 161.0 0.0 4 241 82 318 78 319 0.95 # 2130 # 3161 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 3_2 - 247 NAD_binding_10 PF13460.1 183 2.5e-08 27.9 2.1 1 1 6.1e-10 3.8e-08 27.3 2.1 1 182 9 227 9 228 0.73 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 6_6 - 247 NAD_binding_10 PF13460.1 183 2.1e-05 18.4 3.5 1 1 2.1e-06 0.00013 15.8 3.5 1 182 9 227 9 228 0.72 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 5_12 - 258 NAD_binding_10 PF13460.1 183 7.8e-05 16.5 1.7 1 1 1.3e-05 0.00079 13.2 1.7 2 179 11 232 10 236 0.51 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_30 - 864 AAA_10 PF12846.2 304 1.4e-43 143.2 0.0 1 1 4.2e-45 2.7e-43 142.3 0.0 1 291 474 760 474 768 0.88 # 28963 # 31554 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_16 - 578 AAA_10 PF12846.2 304 6.2e-17 55.7 0.0 1 2 7.6e-09 4.8e-07 23.2 0.0 3 43 187 227 186 250 0.92 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 578 AAA_10 PF12846.2 304 6.2e-17 55.7 0.0 2 2 4.8e-11 3e-09 30.5 0.0 194 300 393 499 283 503 0.89 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_35 - 76 AAA_10 PF12846.2 304 0.00036 13.8 0.0 1 2 5.2e-05 0.0033 10.6 0.1 2 25 11 34 10 39 0.88 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_35 - 76 AAA_10 PF12846.2 304 0.00036 13.8 0.0 2 2 0.029 1.8 1.6 0.0 260 291 38 72 33 74 0.79 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 5_12 - 258 adh_short_C2 PF13561.1 241 4.1e-36 118.7 0.9 1 1 7.5e-38 4.7e-36 118.5 0.9 5 240 16 252 13 253 0.91 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 3_2 - 247 adh_short_C2 PF13561.1 241 1.3e-16 54.8 1.4 1 1 2.6e-18 1.6e-16 54.5 1.4 5 186 15 193 13 238 0.91 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 6_6 - 247 adh_short_C2 PF13561.1 241 1.7e-12 41.4 0.2 1 1 5.1e-14 3.2e-12 40.5 0.2 5 189 15 196 13 228 0.82 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_35 - 76 ResIII PF04851.10 184 0.00015 15.4 0.1 1 1 1e-06 0.00019 15.1 0.1 23 45 8 30 1 62 0.77 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_45 - 419 SPOUT_MTase PF02590.12 155 0.00039 14.0 0.0 1 1 3.2e-06 0.00061 13.3 0.0 32 111 31 109 1 130 0.73 # 40119 # 41375 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.512 1_35 - 76 PduV-EutP PF10662.4 143 0.00062 13.1 0.0 1 1 3.7e-06 0.00069 12.9 0.0 3 21 12 30 10 52 0.78 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 6_6 - 247 Epimerase PF01370.16 236 3.6e-06 20.3 0.4 1 2 1.1e-06 6.7e-05 16.2 0.2 1 116 9 142 9 147 0.74 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 6_6 - 247 Epimerase PF01370.16 236 3.6e-06 20.3 0.4 2 2 0.017 1 2.5 0.0 5 77 152 226 151 240 0.73 # 3343 # 4083 # 1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 3_2 - 247 Epimerase PF01370.16 236 4.1e-06 20.1 1.2 1 1 1.7e-07 1.1e-05 18.8 1.2 1 104 9 126 9 226 0.78 # 991 # 1731 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 5_12 - 258 Epimerase PF01370.16 236 0.00015 15.1 0.2 1 1 8.2e-06 0.00051 13.3 0.2 2 227 11 238 10 248 0.69 # 7789 # 8562 # 1 # ID=5_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 76 DEAD PF00270.24 169 0.0015 11.8 0.0 1 1 8.1e-06 0.0015 11.8 0.0 12 36 8 32 4 66 0.79 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_16 - 578 TrwB_AAD_bind PF10412.4 386 4.3e-149 490.1 0.0 1 1 8e-151 5e-149 489.8 0.0 2 386 172 562 171 562 0.99 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_30 - 864 TrwB_AAD_bind PF10412.4 386 0.00022 13.7 0.0 1 1 6.2e-06 0.00039 12.9 0.0 16 62 475 520 470 543 0.80 # 28963 # 31554 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 2_44 - 421 TrwB_AAD_bind PF10412.4 386 0.00038 12.9 0.0 1 1 9.7e-06 0.0006 12.2 0.0 12 38 60 86 52 96 0.89 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_14 - 1739 AAA_11 PF13086.1 236 0.00019 14.9 0.0 1 1 3.7e-06 0.00069 13.0 0.0 2 72 957 1024 956 1096 0.89 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 2_44 - 421 Sigma54_activ_2 PF14532.1 138 0.0019 12.1 0.0 1 1 3.8e-05 0.0036 11.2 0.0 6 77 46 129 44 144 0.74 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_31 - 73 Sigma54_activ_2 PF14532.1 138 0.002 12.0 0.0 1 1 2.3e-05 0.0021 11.9 0.0 17 46 21 50 19 68 0.85 # 31547 # 31765 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 578 T4SS-DNA_transf PF02534.9 469 3.1e-15 49.4 0.0 1 1 2.4e-16 4.5e-14 45.6 0.0 216 393 332 508 249 528 0.69 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_31 - 73 AAA_32 PF13654.1 509 0.002 10.6 0.0 1 1 1e-05 0.002 10.6 0.0 22 50 17 45 11 61 0.87 # 31547 # 31765 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 578 ArgK PF03308.11 267 0.00052 12.6 0.0 1 1 8.6e-06 0.00081 12.0 0.0 32 62 188 218 164 225 0.87 # 14559 # 16292 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_44 - 421 ArgK PF03308.11 267 0.0026 10.3 0.0 1 1 4.4e-05 0.0041 9.7 0.0 31 52 65 86 50 105 0.83 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_35 - 76 GTP_EFTU PF00009.22 188 0.0011 12.2 0.0 1 1 1.3e-05 0.0013 12.0 0.0 3 56 10 62 8 66 0.77 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_44 - 421 GTP_EFTU PF00009.22 188 0.0018 11.5 0.0 1 1 3.2e-05 0.003 10.8 0.0 2 28 62 88 61 126 0.82 # 43244 # 44506 # -1 # ID=2_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_35 - 76 RNA_helicase PF00910.17 107 0.00033 14.6 0.0 1 1 2.1e-06 0.00039 14.4 0.0 1 41 13 50 13 71 0.70 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_59 - 184 tRNA_anti-codon PF01336.20 75 0.0015 12.3 0.1 1 1 1.4e-05 0.0026 11.4 0.1 30 70 57 107 50 113 0.83 # 51832 # 52383 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_14 - 1739 NACHT PF05729.7 166 0.00078 12.9 0.0 1 2 9.1e-05 0.0086 9.5 0.0 1 26 974 999 974 1051 0.90 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_14 - 1739 NACHT PF05729.7 166 0.00078 12.9 0.0 2 2 0.077 7.3 0.0 0.0 102 139 1455 1492 1425 1507 0.82 # 8927 # 14143 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_35 - 76 NACHT PF05729.7 166 0.0013 12.2 0.2 1 1 2.3e-05 0.0021 11.5 0.2 3 22 13 32 11 60 0.85 # 33379 # 33606 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cb21109b-e27c-451d-be98-7d4a163c74d6 # Target file: checkm_output/bins/pm1064/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1064/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cb21109b-e27c-451d-be98-7d4a163c74d6 checkm_output/bins/pm1064/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:56 2020 # [ok]