# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 334 Mg_chelatase PF01078.16 207 0.00033 12.1 0.0 1 1 8.7e-06 0.00054 11.4 0.0 13 57 150 194 139 214 0.73 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 cobW PF02492.14 178 5.9e-05 14.8 0.0 1 1 1.5e-06 9.4e-05 14.1 0.0 3 44 162 200 160 225 0.80 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 IstB_IS21 PF01695.12 178 5.3e-66 213.6 0.0 1 1 4.4e-67 1.4e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 IstB_IS21 PF01695.12 178 2.9e-05 15.8 0.0 1 1 1.9e-06 5.8e-05 14.8 0.0 43 79 155 190 128 206 0.82 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_26 - 234 3HCDH_N PF02737.13 180 0.055 5.3 11.2 1 3 0.0029 0.18 3.6 2.9 3 58 12 60 6 69 0.60 # 20923 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.437 1_26 - 234 3HCDH_N PF02737.13 180 0.055 5.3 11.2 2 3 0.0012 0.072 4.9 0.1 83 118 45 80 37 83 0.92 # 20923 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.437 1_26 - 234 3HCDH_N PF02737.13 180 0.055 5.3 11.2 3 3 0.0015 0.095 4.5 0.8 45 81 142 178 115 213 0.70 # 20923 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.437 3_8 - 178 SSB PF00436.20 104 1.4e-43 139.3 0.3 1 1 2.7e-45 1.7e-43 139.1 0.3 1 99 6 105 6 113 0.96 # 3307 # 3840 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_14 - 1073 UvrD_C_2 PF13538.1 104 1e-15 50.0 0.6 1 1 6.5e-17 4e-15 48.1 0.2 3 102 801 900 799 902 0.78 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_19 - 334 AAA_2 PF07724.9 171 5.9e-05 15.2 0.1 1 1 1.7e-06 0.00011 14.4 0.1 2 49 158 203 157 216 0.84 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_13 - 511 DUF87 PF01935.12 229 2.4e-10 32.8 0.0 1 1 1.2e-11 3.9e-10 32.1 0.0 12 81 118 181 109 252 0.77 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 DUF87 PF01935.12 229 2.5e-05 16.4 0.0 1 1 1.5e-06 4.8e-05 15.5 0.0 26 61 162 196 156 208 0.84 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 NB-ARC PF00931.17 287 0.00046 11.3 0.0 1 1 1.7e-05 0.0011 10.1 0.0 13 42 153 182 145 214 0.80 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AAA_22 PF13401.1 131 7.8e-07 21.6 0.0 1 2 1.2e-05 0.00026 13.4 0.1 4 28 101 125 98 148 0.75 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 AAA_22 PF13401.1 131 7.8e-07 21.6 0.0 2 2 0.0025 0.051 6.0 0.0 77 101 151 178 124 201 0.64 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 AAA_22 PF13401.1 131 8.1e-07 21.5 0.1 1 1 1e-07 2.1e-06 20.1 0.0 3 68 158 217 155 246 0.78 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_13 - 511 AAA_22 PF13401.1 131 0.00061 12.2 0.0 1 2 0.0021 0.044 6.2 0.0 6 26 128 148 123 171 0.83 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 511 AAA_22 PF13401.1 131 0.00061 12.2 0.0 2 2 0.044 0.9 1.9 0.0 82 101 346 368 310 385 0.76 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 2_9 - 260 AAA_17 PF13207.1 121 0.00024 14.2 0.0 1 1 2e-05 0.0004 13.4 0.0 2 26 104 131 103 216 0.74 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_27 - 858 AAA_17 PF13207.1 121 0.00048 13.2 0.8 1 2 0.0019 0.04 7.0 0.0 3 19 490 506 489 559 0.82 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_27 - 858 AAA_17 PF13207.1 121 0.00048 13.2 0.8 2 2 0.08 1.7 1.8 0.1 52 91 619 654 591 729 0.69 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_13 - 511 AAA_17 PF13207.1 121 0.00077 12.6 1.0 1 1 0.00012 0.0024 11.0 1.0 4 49 131 201 129 311 0.60 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 MobB PF03205.9 140 3.5e-06 19.0 0.2 1 1 1.7e-07 1e-05 17.5 0.0 2 38 161 196 160 208 0.81 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_14 - 1073 PhoH PF02562.11 205 6.1e-10 30.9 2.1 1 2 8.4e-07 1.7e-05 16.3 0.2 5 40 482 518 479 531 0.82 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 1073 PhoH PF02562.11 205 6.1e-10 30.9 2.1 2 2 5.6e-06 0.00012 13.6 0.1 120 162 565 608 561 642 0.80 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_9 - 260 PhoH PF02562.11 205 2e-07 22.7 0.1 1 1 1.5e-08 3.1e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 PhoH PF02562.11 205 1.5e-05 16.5 0.0 1 1 1.4e-06 2.8e-05 15.6 0.0 9 39 149 179 142 210 0.77 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AFG1_ATPase PF03969.11 362 0.00019 12.5 0.0 1 1 5.8e-06 0.00036 11.6 0.0 64 214 103 251 81 258 0.78 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 T2SE PF00437.15 272 1.8e-53 173.3 0.1 1 1 3.4e-55 2.1e-53 173.1 0.1 3 270 11 311 9 313 0.92 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 Zeta_toxin PF06414.7 201 1.7e-06 19.4 0.0 1 1 4.7e-08 2.9e-06 18.7 0.0 11 51 154 194 144 206 0.82 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 Arch_ATPase PF01637.13 234 1.8e-05 16.7 0.0 1 1 6.1e-07 3.8e-05 15.7 0.0 16 69 157 207 144 248 0.86 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 AAA_16 PF13191.1 185 2.8e-07 22.9 0.0 1 1 3.8e-08 5.9e-07 21.8 0.0 24 51 159 186 138 211 0.81 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AAA_16 PF13191.1 185 9.1e-06 18.0 2.4 1 1 4.8e-06 7.4e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_27 - 858 AAA_16 PF13191.1 185 5.5e-05 15.4 0.1 1 2 0.00029 0.0046 9.2 0.0 25 47 487 506 474 556 0.77 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_27 - 858 AAA_16 PF13191.1 185 5.5e-05 15.4 0.1 2 2 0.027 0.41 2.8 0.0 115 170 655 712 614 719 0.71 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_13 - 511 AAA_16 PF13191.1 185 0.00014 14.1 0.0 1 1 3.6e-05 0.00056 12.1 0.0 26 175 128 371 120 381 0.72 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 511 AAA_23 PF13476.1 202 0.00015 14.3 0.8 1 1 4.3e-06 0.00027 13.5 0.9 23 47 130 156 126 329 0.75 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 AAA_18 PF13238.1 129 6e-05 15.6 0.0 1 1 4.7e-06 0.00015 14.4 0.0 1 28 162 194 162 216 0.76 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_13 - 511 AAA_18 PF13238.1 129 0.0004 13.0 0.0 1 1 2.3e-05 0.00071 12.1 0.0 3 42 131 184 130 257 0.67 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_10 - 239 CbiA PF01656.18 195 1.5e-07 23.2 1.0 1 1 1.1e-06 3.4e-05 15.5 1.0 3 162 5 141 3 168 0.71 # 6352 # 7068 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 2_9 - 260 CbiA PF01656.18 195 0.0006 11.5 0.0 1 1 2.5e-05 0.00078 11.1 0.0 3 42 105 145 104 254 0.75 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 AAA_14 PF13173.1 128 2.2e-07 23.1 0.0 1 2 3.4e-08 1.1e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 AAA_14 PF13173.1 128 2.2e-07 23.1 0.0 2 2 0.096 3 0.0 0.0 14 46 215 247 212 257 0.80 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 511 AAA_14 PF13173.1 128 0.00011 14.3 0.6 1 2 0.00021 0.0064 8.6 0.1 7 41 131 169 127 305 0.81 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 511 AAA_14 PF13173.1 128 0.00011 14.3 0.6 2 2 0.016 0.48 2.6 0.0 60 77 342 370 302 395 0.59 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_12 - 141 Rossmann-like PF10727.4 127 7.8e-05 14.7 0.0 1 1 1.8e-06 0.00011 14.2 0.0 78 111 73 106 45 115 0.84 # 7978 # 8400 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 1_27 - 858 AAA_29 PF13555.1 62 2e-05 16.4 0.0 1 1 1.5e-06 4.7e-05 15.2 0.0 23 41 487 504 475 508 0.86 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_19 - 334 AAA_29 PF13555.1 62 5.9e-05 14.8 0.0 1 1 4.8e-06 0.00015 13.6 0.0 22 53 158 189 149 197 0.83 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AAA PF00004.24 132 1.3e-08 27.3 0.0 1 1 4.1e-10 2.5e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 Bac_DnaA PF00308.13 219 3.2e-09 28.9 0.0 1 1 7.8e-11 4.8e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 Sigma54_activat PF00158.21 168 6.1e-06 18.0 0.0 1 1 1.8e-07 1.1e-05 17.2 0.0 16 67 153 204 140 213 0.80 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 MMR_HSR1 PF01926.18 116 0.00051 12.3 0.0 1 1 1.8e-05 0.0011 11.2 0.0 2 24 162 189 161 244 0.73 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 DUF258 PF03193.11 161 7e-05 14.3 0.0 1 1 4.3e-06 0.00013 13.4 0.0 30 97 154 219 135 229 0.74 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 DUF258 PF03193.11 161 0.00013 13.4 0.0 1 1 7.3e-06 0.00023 12.6 0.0 26 59 92 125 80 153 0.82 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 511 TraG-D_C PF12696.2 128 9.2e-21 66.3 0.0 1 1 2.7e-22 1.7e-20 65.5 0.0 1 127 352 474 352 475 0.83 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 2_9 - 260 NTPase_1 PF03266.10 168 0.00014 13.8 0.1 1 2 0.0015 0.094 4.6 0.1 2 30 104 132 103 143 0.82 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 NTPase_1 PF03266.10 168 0.00014 13.8 0.1 2 2 0.0003 0.019 6.9 0.0 87 108 155 176 141 202 0.77 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 AAA_33 PF13671.1 143 0.00014 14.0 0.0 1 1 4.1e-06 0.00025 13.2 0.0 2 62 162 236 161 249 0.81 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_14 - 1073 AAA_30 PF13604.1 196 3.9e-50 162.3 4.6 1 1 1.3e-51 3.9e-50 162.3 4.6 1 186 480 657 480 665 0.97 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_19 - 334 AAA_30 PF13604.1 196 3.9e-05 15.5 0.1 1 1 2e-06 6.3e-05 14.8 0.1 13 65 155 206 143 228 0.77 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 FtsK_SpoIIIE PF01580.13 205 5e-07 21.6 0.0 1 1 3.7e-08 7.7e-07 21.0 0.0 27 65 148 186 120 207 0.71 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_27 - 858 FtsK_SpoIIIE PF01580.13 205 5.4e-06 18.2 0.0 1 1 6.7e-07 1.4e-05 16.9 0.0 21 64 457 512 441 522 0.80 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_13 - 511 FtsK_SpoIIIE PF01580.13 205 8.3e-06 17.6 0.1 1 2 8.7e-05 0.0018 10.0 0.0 34 65 116 153 97 166 0.75 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 511 FtsK_SpoIIIE PF01580.13 205 8.3e-06 17.6 0.1 2 2 0.0023 0.048 5.3 0.0 100 138 424 464 415 482 0.78 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 ABC_tran PF00005.22 137 1.7e-07 23.9 0.0 1 1 8.5e-09 2.6e-07 23.2 0.0 8 51 156 200 152 260 0.86 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 ABC_tran PF00005.22 137 0.00032 13.2 0.2 1 1 4.1e-05 0.0013 11.3 0.1 8 31 98 121 95 132 0.86 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 AAA_19 PF13245.1 76 4.8e-05 15.4 0.1 1 1 3.6e-06 0.00011 14.2 0.1 6 47 155 191 151 221 0.80 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AAA_19 PF13245.1 76 0.00042 12.3 0.2 1 1 5.3e-05 0.0016 10.5 0.0 11 35 103 126 95 157 0.81 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_14 - 1073 Helicase_RecD PF05127.9 177 0.0021 9.9 6.3 1 1 1.2e-05 0.00072 11.4 1.6 5 115 457 589 455 599 0.57 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_27 - 858 AAA_10 PF12846.2 304 1.1e-31 102.6 0.0 1 1 2.6e-32 4e-31 100.7 0.0 2 293 487 763 486 771 0.87 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_13 - 511 AAA_10 PF12846.2 304 1e-11 37.0 0.0 1 2 4.5e-08 7e-07 21.1 0.0 3 46 128 172 126 215 0.86 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 511 AAA_10 PF12846.2 304 1e-11 37.0 0.0 2 2 7.5e-06 0.00012 13.8 0.0 214 285 329 415 308 433 0.70 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 2_9 - 260 AAA_10 PF12846.2 304 2.3e-05 16.1 0.2 1 2 0.058 0.89 1.1 0.0 106 155 28 69 4 89 0.61 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 AAA_10 PF12846.2 304 2.3e-05 16.1 0.2 2 2 1.8e-05 0.00027 12.6 0.1 3 35 103 135 101 172 0.84 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 AAA_10 PF12846.2 304 0.00011 13.9 0.0 1 1 1.6e-05 0.00025 12.8 0.0 3 28 161 186 159 218 0.74 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 ResIII PF04851.10 184 7.2e-05 14.9 0.0 1 1 2.2e-06 0.00014 14.0 0.0 22 58 142 194 99 214 0.74 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_14 - 1073 Viral_helicase1 PF01443.13 234 3.6e-15 48.3 1.5 1 2 1.4e-07 8.9e-06 17.6 0.0 3 117 502 619 500 667 0.67 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 1073 Viral_helicase1 PF01443.13 234 3.6e-15 48.3 1.5 2 2 4e-11 2.5e-09 29.2 0.5 165 234 833 903 781 903 0.69 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_19 - 334 DUF2075 PF09848.4 352 1.6e-05 16.2 0.0 1 1 3.7e-07 2.3e-05 15.7 0.0 1 58 159 213 159 240 0.70 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_26 - 234 Methyltransf_3 PF01596.12 205 5.6e-05 14.5 0.1 1 1 1.8e-06 0.00011 13.5 0.1 48 126 64 142 42 157 0.86 # 20923 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.437 1_19 - 334 DEAD PF00270.24 169 1.1e-05 17.2 0.1 1 1 3e-07 1.9e-05 16.5 0.1 11 70 156 212 147 232 0.79 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_13 - 511 TrwB_AAD_bind PF10412.4 386 1.4e-110 361.7 0.0 1 1 8.1e-112 1.7e-110 361.4 0.0 1 385 112 493 112 494 0.94 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_27 - 858 TrwB_AAD_bind PF10412.4 386 4.8e-06 17.6 0.1 1 1 1e-06 2.1e-05 15.5 0.0 16 51 487 522 480 531 0.92 # 21640 # 24213 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_19 - 334 TrwB_AAD_bind PF10412.4 386 1.3e-05 16.1 0.0 1 1 1e-06 2.1e-05 15.4 0.0 13 49 157 192 149 201 0.82 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 Sigma54_activ_2 PF14532.1 138 2.3e-07 23.2 0.0 1 1 1.4e-08 4.3e-07 22.3 0.0 14 68 152 206 145 213 0.91 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 Sigma54_activ_2 PF14532.1 138 0.00024 13.4 0.0 1 1 1.3e-05 0.00039 12.7 0.0 9 64 87 144 84 229 0.70 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 511 T4SS-DNA_transf PF02534.9 469 4.3e-15 47.4 0.0 1 2 0.023 1.4 -0.5 0.0 46 88 128 173 99 267 0.76 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_13 - 511 T4SS-DNA_transf PF02534.9 469 4.3e-15 47.4 0.0 2 2 3e-16 1.9e-14 45.3 0.0 252 439 302 488 298 502 0.82 # 8400 # 9932 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_19 - 334 Pox_A32 PF04665.7 241 0.00019 13.0 0.0 1 1 5.5e-06 0.00034 12.2 0.0 14 44 160 190 149 211 0.82 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_14 - 1073 PIF1 PF05970.9 364 2.7e-05 15.4 0.2 1 2 1.1e-05 0.00034 11.8 0.1 5 66 484 541 480 604 0.80 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 1073 PIF1 PF05970.9 364 2.7e-05 15.4 0.2 2 2 0.02 0.61 1.1 0.0 334 362 798 825 785 827 0.87 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_19 - 334 PIF1 PF05970.9 364 0.00048 11.3 0.0 1 1 2.6e-05 0.0008 10.6 0.0 21 57 158 194 150 208 0.80 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 RNA_helicase PF00910.17 107 0.0003 13.2 0.0 1 1 1.4e-05 0.00089 11.7 0.0 1 24 162 185 162 215 0.79 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_19 - 334 UPF0079 PF02367.12 123 7.4e-06 17.9 0.0 1 1 2.3e-07 1.4e-05 17.0 0.0 11 45 155 189 145 193 0.85 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AAA_24 PF13479.1 213 0.00082 11.2 0.1 1 1 3e-05 0.0019 10.0 0.1 5 23 103 121 99 127 0.85 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 NACHT PF05729.7 166 1.9e-05 16.6 0.0 1 1 1.2e-06 3.8e-05 15.6 0.0 1 24 160 183 160 188 0.90 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 NACHT PF05729.7 166 7.9e-05 14.6 0.0 1 1 4.1e-06 0.00013 13.9 0.0 3 49 104 151 102 200 0.81 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_9 - 260 AAA_25 PF13481.1 194 4.5e-07 21.7 0.1 1 1 4.4e-08 1.4e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 AAA_25 PF13481.1 194 0.00018 13.1 0.0 1 1 1.4e-05 0.00043 11.9 0.0 20 58 147 184 129 210 0.78 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 2_9 - 260 AAA_28 PF13521.1 163 0.00016 13.9 0.0 1 1 5e-06 0.00031 13.0 0.0 1 49 103 156 103 171 0.73 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_14 - 1073 Herpes_Helicase PF02689.9 819 1.4e-05 15.2 0.2 1 3 0.0012 0.071 2.9 0.0 169 209 538 578 500 585 0.85 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 1073 Herpes_Helicase PF02689.9 819 1.4e-05 15.2 0.2 2 3 0.041 2.5 -2.2 0.0 397 454 639 704 625 709 0.67 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_14 - 1073 Herpes_Helicase PF02689.9 819 1.4e-05 15.2 0.2 3 3 1.5e-05 0.00096 9.1 0.0 737 782 852 898 830 913 0.77 # 9937 # 13155 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_9 - 260 AAA_5 PF07728.9 139 1.1e-05 17.4 0.0 1 1 9.1e-07 2.8e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 8650 # 9429 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_19 - 334 AAA_5 PF07728.9 139 1.8e-05 16.8 0.0 1 1 1.3e-06 4.1e-05 15.6 0.0 2 31 162 192 161 221 0.77 # 15620 # 16621 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6ff49d69-94d7-4a95-baee-39886992d18f # Target file: checkm_output/bins/pm1055/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1055/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6ff49d69-94d7-4a95-baee-39886992d18f checkm_output/bins/pm1055/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:50 2020 # [ok]