# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_17 - 188 Methyltransf_12 PF08242.7 99 1.1e-05 18.8 0.0 1 1 2e-07 2e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_7 - 228 UPF0020 PF01170.13 180 7.1e-06 18.6 0.0 1 2 0.00033 0.016 7.6 0.0 104 119 18 33 7 88 0.73 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_7 - 228 UPF0020 PF01170.13 180 7.1e-06 18.6 0.0 2 2 0.00012 0.0062 9.0 0.0 28 54 163 189 158 221 0.67 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_17 - 188 UPF0020 PF01170.13 180 0.0011 11.5 0.0 1 1 7.6e-05 0.0039 9.7 0.0 19 43 41 65 35 130 0.78 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_17 - 188 RrnaAD PF00398.15 262 2.1e-08 26.4 0.0 1 1 2.7e-10 2.7e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 3_8 - 176 SSB PF00436.20 104 2.4e-41 132.8 0.4 1 1 3.4e-43 3.4e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_17 - 188 Methyltransf_18 PF12847.2 112 3e-10 33.6 0.0 1 1 6.3e-12 6.3e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_8 - 1372 UvrD_C_2 PF13538.1 104 7.9e-08 25.4 0.7 1 2 0.0097 0.98 2.6 0.0 6 44 842 880 838 910 0.74 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_8 - 1372 UvrD_C_2 PF13538.1 104 7.9e-08 25.4 0.7 2 2 3.8e-08 3.9e-06 19.9 0.2 3 102 956 1059 954 1061 0.77 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_35 - 877 DUF87 PF01935.12 229 2.3e-07 23.7 0.0 1 1 6.9e-09 7e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_7 - 228 N6_N4_Mtase PF01555.13 231 6.6e-37 120.1 0.0 1 2 1.3e-15 1.3e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_7 - 228 N6_N4_Mtase PF01555.13 231 6.6e-37 120.1 0.0 2 2 5.4e-25 5.4e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_12 - 686 AAA_17 PF13207.1 121 0.00031 14.5 0.0 1 1 9.2e-06 0.00093 13.0 0.0 3 27 189 217 187 282 0.70 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_35 - 877 MobB PF03205.9 140 0.00074 12.2 0.1 1 1 2.7e-05 0.0027 10.3 0.0 4 37 484 516 482 524 0.79 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_12 - 686 Zeta_toxin PF06414.7 201 0.00079 11.5 0.0 1 1 3.2e-05 0.0033 9.4 0.0 21 49 190 219 182 236 0.85 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_12 - 686 AAA_16 PF13191.1 185 3.6e-06 20.0 0.0 1 1 3.6e-07 1.8e-05 17.7 0.0 21 60 182 222 179 264 0.81 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 123 AAA_16 PF13191.1 185 0.0014 11.6 0.1 1 1 4.6e-05 0.0023 10.8 0.1 22 48 86 112 80 119 0.88 # 34303 # 34671 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_17 - 188 Methyltransf_25 PF13649.1 101 0.00012 15.4 0.0 1 1 1.7e-06 0.00017 14.9 0.0 1 101 54 142 54 142 0.81 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_12 - 686 TraG-D_C PF12696.2 128 6.9e-21 67.4 0.0 1 1 1.3e-22 1.3e-20 66.5 0.0 1 127 419 541 419 542 0.86 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_40 - 123 KTI12 PF08433.5 270 0.00085 11.4 0.1 1 1 1.4e-05 0.0014 10.7 0.1 5 30 92 117 91 120 0.87 # 34303 # 34671 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_17 - 188 Methyltransf_26 PF13659.1 117 2.7e-14 46.2 0.0 1 1 9e-16 4.5e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_7 - 228 Methyltransf_26 PF13659.1 117 1.5e-12 40.6 0.1 1 2 7e-08 3.6e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_7 - 228 Methyltransf_26 PF13659.1 117 1.5e-12 40.6 0.1 2 2 1.9e-07 9.8e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 4_6 - 252 FmrO PF07091.6 251 2.2e-82 268.7 0.0 1 1 2.4e-84 2.5e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 3758 # 4513 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_8 - 1372 AAA_30 PF13604.1 196 1.2e-44 145.1 13.3 1 2 1.4e-05 0.00071 12.1 3.9 7 146 35 166 31 176 0.81 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_8 - 1372 AAA_30 PF13604.1 196 1.2e-44 145.1 13.3 2 2 7.1e-44 3.6e-42 137.1 1.9 1 186 583 771 583 778 0.94 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_12 - 686 AAA_30 PF13604.1 196 0.00058 12.4 0.0 1 1 2.4e-05 0.0012 11.3 0.0 21 57 188 224 180 230 0.85 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_35 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 1 2 2e-06 0.00021 13.7 0.0 39 63 477 505 464 508 0.84 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 2 2 0.015 1.5 1.1 0.0 75 166 531 626 530 669 0.82 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_17 - 188 MTS PF05175.9 170 8.8e-10 31.1 0.0 1 1 1.2e-11 1.2e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_17 - 188 Methyltrans_SAM PF10672.4 286 0.00093 11.0 0.0 1 1 1.3e-05 0.0013 10.5 0.0 196 261 113 173 100 180 0.78 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_17 - 188 Met_10 PF02475.11 200 0.00045 12.7 0.0 1 1 5.7e-06 0.00057 12.4 0.0 98 189 47 132 29 145 0.79 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_7 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.9 0.0 1 2 0.00032 0.032 6.5 0.0 113 146 19 54 5 81 0.66 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_7 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.9 0.0 2 2 4e-05 0.0041 9.4 0.0 41 62 162 183 145 218 0.78 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 1372 AAA_19 PF13245.1 76 9.8e-08 24.7 1.9 1 1 8.4e-09 4.2e-07 22.6 0.5 7 76 596 662 589 662 0.74 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_40 - 123 AAA_19 PF13245.1 76 0.00068 12.3 0.0 1 1 2.2e-05 0.0011 11.7 0.0 13 37 91 115 82 122 0.78 # 34303 # 34671 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_35 - 877 AAA_10 PF12846.2 304 4.2e-49 160.5 0.0 1 1 1.5e-50 7.4e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_12 - 686 AAA_10 PF12846.2 304 1.2e-10 34.2 0.0 1 1 5.3e-11 2.7e-09 29.7 0.0 3 296 187 494 186 499 0.68 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_17 - 188 Methyltransf_31 PF13847.1 152 6.3e-07 22.0 0.0 1 1 7.6e-09 7.7e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_8 - 1372 Viral_helicase1 PF01443.13 234 0.00022 13.7 0.0 1 2 0.0001 0.01 8.2 0.0 1 118 603 736 603 828 0.53 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_8 - 1372 Viral_helicase1 PF01443.13 234 0.00022 13.7 0.0 2 2 0.0049 0.5 2.7 0.0 171 234 1002 1062 957 1062 0.63 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_12 - 686 TrwB_AAD_bind PF10412.4 386 3.1e-150 492.9 0.0 1 1 7.4e-152 3.7e-150 492.7 0.0 2 386 172 561 171 561 0.99 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_35 - 877 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 1 2 4.8e-08 2.4e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 877 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 2 2 0.054 2.7 -0.7 0.1 261 317 714 770 706 773 0.92 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 1372 AAA_11 PF13086.1 236 0.00016 14.2 0.0 1 1 1.5e-06 0.00016 14.2 0.0 2 75 584 654 583 675 0.81 # 5065 # 9180 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_12 - 686 T4SS-DNA_transf PF02534.9 469 6.3e-10 31.0 0.0 1 1 3.3e-11 1.7e-09 29.6 0.0 264 361 382 476 198 500 0.82 # 10535 # 12592 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_35 - 877 T4SS-DNA_transf PF02534.9 469 0.00033 12.2 0.0 1 2 0.0047 0.24 2.8 0.0 105 182 534 605 471 624 0.82 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_35 - 877 T4SS-DNA_transf PF02534.9 469 0.00033 12.2 0.0 2 2 0.00023 0.011 7.1 0.0 319 378 712 770 663 772 0.91 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_17 - 188 TIGR00755 TIGR00755 256 7.2e-09 27.9 0.0 1 1 9.5e-11 9.6e-09 27.4 0.0 8 105 29 123 25 134 0.90 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_7 - 228 MethyltransfD12 PF02086.10 260 0.00057 12.3 0.0 1 2 0.022 2.2 0.5 0.0 178 188 21 31 14 91 0.83 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_7 - 228 MethyltransfD12 PF02086.10 260 0.00057 12.3 0.0 2 2 4e-05 0.004 9.5 0.0 20 46 163 189 148 197 0.78 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_35 - 877 Pox_A32 PF04665.7 241 0.00074 11.7 0.1 1 1 2.3e-05 0.0023 10.1 0.0 7 38 474 505 470 520 0.85 # 29537 # 32167 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_17 - 188 Methyltransf_23 PF13489.1 161 6.1e-05 15.7 0.0 1 1 1.6e-06 7.9e-05 15.3 0.0 9 120 38 153 27 174 0.78 # 12988 # 13551 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_6 - 252 Methyltransf_23 PF13489.1 161 0.00036 13.2 0.0 1 1 1.1e-05 0.00054 12.6 0.0 7 52 89 132 82 198 0.78 # 3758 # 4513 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_7 - 228 Methyltransf_15 PF09445.5 164 0.00029 13.3 0.0 1 2 0.012 1.3 1.5 0.0 53 79 4 29 2 33 0.91 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_7 - 228 Methyltransf_15 PF09445.5 164 0.00029 13.3 0.0 2 2 4.2e-05 0.0043 9.5 0.0 3 31 166 194 164 209 0.86 # 4241 # 4924 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/740b6c95-ccae-4565-a453-1412ef837fe2 # Target file: checkm_output/bins/pm1052/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1052/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/740b6c95-ccae-4565-a453-1412ef837fe2 checkm_output/bins/pm1052/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:48 2020 # [ok]