# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_13 - 519 UPF0020 PF01170.13 180 3.9e-09 30.2 0.1 1 1 3.1e-10 3.1e-08 27.3 0.0 22 117 211 304 196 311 0.76 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 3_8 - 228 UPF0020 PF01170.13 180 2.7e-05 17.7 0.0 1 2 0.00058 0.06 6.8 0.0 103 119 17 33 4 88 0.73 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_8 - 228 UPF0020 PF01170.13 180 2.7e-05 17.7 0.0 2 2 0.00012 0.013 9.0 0.0 28 54 163 189 158 221 0.67 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 6_9 - 232 cobW PF02492.14 178 0.001 12.4 0.0 1 1 8.3e-06 0.0017 11.7 0.0 3 21 39 57 37 80 0.85 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 14_3 - 188 RrnaAD PF00398.15 262 3.4e-07 23.4 0.0 1 1 2.1e-09 4.3e-07 23.1 0.0 9 90 29 109 24 139 0.90 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_11 - 389 MipZ PF09140.6 261 8.9e-06 18.8 0.4 1 2 3.5e-06 0.00073 12.6 0.0 2 47 108 153 107 157 0.87 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_11 - 389 MipZ PF09140.6 261 8.9e-06 18.8 0.4 2 2 0.0011 0.23 4.4 0.0 88 134 224 270 197 292 0.84 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 14_3 - 188 Methyltransf_18 PF12847.2 112 1.6e-08 29.1 0.0 1 1 1.7e-10 3.5e-08 28.0 0.0 4 109 53 146 50 148 0.87 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_42 - 1757 UvrD_C_2 PF13538.1 104 7e-08 26.5 1.0 1 2 0.0087 1.8 2.7 0.0 5 44 1226 1265 1223 1294 0.76 # 31208 # 36478 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_42 - 1757 UvrD_C_2 PF13538.1 104 7e-08 26.5 1.0 2 2 1.4e-08 2.9e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 31208 # 36478 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_23 - 876 DUF87 PF01935.12 229 1.5e-07 25.3 0.0 1 1 6.7e-09 4.6e-07 23.8 0.0 26 222 482 669 468 676 0.77 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_19 - 54 DUF87 PF01935.12 229 0.00027 14.7 0.0 1 1 4.8e-06 0.00033 14.4 0.0 25 50 21 46 18 50 0.91 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 6_9 - 232 DUF87 PF01935.12 229 0.00046 13.9 0.0 1 2 5.1e-05 0.0035 11.1 0.1 26 44 39 57 21 59 0.91 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 DUF87 PF01935.12 229 0.00046 13.9 0.0 2 2 0.081 5.5 0.6 0.0 136 184 128 196 95 215 0.65 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 NB-ARC PF00931.17 287 0.0012 11.6 0.1 1 1 9.7e-06 0.002 10.9 0.1 18 37 35 54 24 65 0.87 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_22 PF13401.1 131 4.8e-05 17.4 0.7 1 1 3.4e-06 0.00035 14.7 0.7 3 25 35 57 31 207 0.82 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_19 - 54 AAA_22 PF13401.1 131 0.00063 13.8 0.0 1 1 6.8e-06 0.0007 13.7 0.0 3 27 18 42 13 51 0.86 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 6_9 - 232 AAA_15 PF13175.1 415 0.0005 13.1 0.0 1 2 4e-05 0.0083 9.1 0.0 25 46 34 60 9 93 0.72 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_15 PF13175.1 415 0.0005 13.1 0.0 2 2 0.0056 1.2 2.0 0.0 372 414 164 205 140 205 0.89 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_8 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 120.1 0.0 1 2 1.2e-15 2.4e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_8 - 228 N6_N4_Mtase PF01555.13 231 1.3e-36 120.1 0.0 2 2 5.4e-25 1.1e-22 74.5 0.0 169 228 141 200 126 203 0.90 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 6_9 - 232 AAA_17 PF13207.1 121 5.7e-05 17.9 0.2 1 1 8.7e-07 9e-05 17.2 0.2 2 19 39 56 38 219 0.85 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_41 - 724 AAA_17 PF13207.1 121 0.00068 14.4 0.0 1 1 1.6e-05 0.0016 13.2 0.0 3 28 189 218 187 336 0.73 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 232 AAA_21 PF13304.1 303 4.8e-13 43.6 0.0 1 2 3.7e-06 0.00039 14.3 0.1 1 22 38 59 38 71 0.87 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_21 PF13304.1 303 4.8e-13 43.6 0.0 2 2 6.2e-10 6.4e-08 26.8 0.0 234 301 141 205 134 206 0.96 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 5_7 - 713 AAA_21 PF13304.1 303 3.4e-08 27.7 0.2 1 2 1.4e-05 0.0014 12.5 0.0 7 71 29 106 27 212 0.63 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 5_7 - 713 AAA_21 PF13304.1 303 3.4e-08 27.7 0.2 2 2 1.3e-05 0.0013 12.6 0.0 219 298 386 487 301 489 0.75 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_23 - 876 MobB PF03205.9 140 0.00053 13.6 0.2 1 1 8.1e-05 0.0055 10.3 0.0 4 37 483 515 481 523 0.79 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 6_9 - 232 MobB PF03205.9 140 0.00055 13.6 0.0 1 1 1.4e-05 0.00099 12.8 0.0 3 20 39 56 37 108 0.84 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_41 - 724 MobB PF03205.9 140 0.0017 12.0 0.0 1 1 5.3e-05 0.0036 10.9 0.0 7 34 192 219 188 225 0.89 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_12 - 122 CTP_transf_2 PF01467.21 157 0.0025 11.8 0.0 1 1 1.3e-05 0.0027 11.7 0.0 36 67 12 41 2 98 0.64 # 7445 # 7810 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 3_11 - 389 ArsA_ATPase PF02374.10 305 3.6e-06 20.1 0.4 1 2 1.7e-06 0.00034 13.6 0.1 9 36 115 142 109 151 0.89 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_11 - 389 ArsA_ATPase PF02374.10 305 3.6e-06 20.1 0.4 2 2 0.0011 0.23 4.3 0.0 123 136 231 244 221 251 0.84 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_19 - 54 T2SE PF00437.15 272 0.00072 12.4 0.0 1 1 3.5e-06 0.00072 12.4 0.0 112 155 6 46 1 51 0.77 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_19 - 54 Zeta_toxin PF06414.7 201 0.00067 12.7 0.1 1 1 3.4e-06 0.0007 12.6 0.1 14 40 17 43 6 49 0.79 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 6_9 - 232 SMC_N PF02463.14 220 5.8e-09 29.4 0.0 1 1 4.7e-09 4.8e-07 23.1 0.0 24 212 36 216 24 220 0.76 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 5_7 - 713 SMC_N PF02463.14 220 0.00043 13.5 0.0 1 2 0.00097 0.1 5.7 0.0 5 45 3 42 1 50 0.78 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 5_7 - 713 SMC_N PF02463.14 220 0.00043 13.5 0.0 2 2 0.00099 0.1 5.7 0.0 135 186 243 470 100 500 0.73 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 3_11 - 389 VirC1 PF07015.6 231 0.00014 14.9 0.1 1 2 0.00028 0.058 6.3 0.0 4 42 109 147 107 154 0.91 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_11 - 389 VirC1 PF07015.6 231 0.00014 14.9 0.1 2 2 0.0003 0.062 6.2 0.1 84 139 235 290 222 312 0.77 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_41 - 724 AAA_16 PF13191.1 185 1e-05 19.5 0.0 1 1 6.5e-07 4.4e-05 17.4 0.0 21 60 182 222 179 263 0.81 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 232 AAA_16 PF13191.1 185 1.3e-05 19.2 0.4 1 1 4.2e-07 2.9e-05 18.0 0.4 18 56 30 69 23 200 0.73 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_19 - 54 AAA_16 PF13191.1 185 0.00016 15.6 0.0 1 1 2.5e-06 0.00017 15.5 0.0 22 51 17 46 10 52 0.90 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 5_7 - 713 AAA_23 PF13476.1 202 2.1e-08 28.6 0.1 1 1 6.7e-10 6.9e-08 26.9 0.1 2 177 3 271 2 351 0.67 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 6_9 - 232 AAA_23 PF13476.1 202 0.001 13.3 0.0 1 1 1.4e-05 0.0015 12.8 0.0 19 39 36 56 18 94 0.84 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_18 PF13238.1 129 8.7e-05 16.8 0.7 1 1 3e-06 0.00062 14.0 0.7 1 19 39 57 39 214 0.88 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 5_7 - 713 AAA_13 PF13166.1 712 1.1e-26 87.4 0.0 1 3 1.5e-11 1.6e-09 30.7 0.0 15 129 20 151 10 169 0.76 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 5_7 - 713 AAA_13 PF13166.1 712 1.1e-26 87.4 0.0 2 3 7e-06 0.00072 12.0 0.0 240 390 195 383 184 388 0.60 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 5_7 - 713 AAA_13 PF13166.1 712 1.1e-26 87.4 0.0 3 3 4.9e-15 5.1e-13 42.2 0.0 461 572 376 489 309 509 0.77 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 6_9 - 232 AAA_13 PF13166.1 712 0.0034 9.7 0.0 1 1 6.8e-05 0.007 8.7 0.0 20 42 40 62 25 94 0.83 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_11 - 389 CbiA PF01656.18 195 2.1e-36 119.1 0.0 1 1 1.3e-38 2.7e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 6_9 - 232 KaiC PF06745.8 227 0.00099 12.2 0.1 1 1 9.4e-06 0.0019 11.2 0.1 7 35 25 52 22 66 0.88 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_14 PF13173.1 128 0.0011 12.8 0.0 1 1 1.2e-05 0.0025 11.6 0.0 2 41 36 75 35 131 0.63 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_29 PF13555.1 62 5.6e-06 19.8 0.1 1 1 5.1e-08 1e-05 18.9 0.1 16 42 30 55 24 71 0.78 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 11_8 - 139 Ribosomal_S8 PF00410.14 129 0.0027 11.5 1.8 1 2 0.0059 1.2 2.9 0.1 41 73 2 29 1 35 0.56 # 4250 # 4666 # 1 # ID=11_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 11_8 - 139 Ribosomal_S8 PF00410.14 129 0.0027 11.5 1.8 2 2 0.00012 0.025 8.4 0.1 50 87 90 128 50 135 0.79 # 4250 # 4666 # 1 # ID=11_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 6_9 - 232 MMR_HSR1 PF01926.18 116 0.00038 14.3 0.2 1 1 3.2e-06 0.00065 13.6 0.2 2 20 39 57 38 201 0.91 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_13 - 519 N6_Mtase PF02384.11 311 7.6e-118 387.0 0.8 1 1 9.9e-120 1e-117 386.5 0.8 2 310 171 479 170 480 0.97 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 14_3 - 188 N6_Mtase PF02384.11 311 0.0021 11.1 0.0 1 1 6.8e-05 0.007 9.3 0.0 28 62 32 66 21 75 0.89 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 6_9 - 232 DUF258 PF03193.11 161 2.9e-06 20.5 0.0 1 1 4.1e-08 4.2e-06 19.9 0.0 19 61 19 62 4 91 0.83 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_19 - 54 DUF258 PF03193.11 161 0.0021 11.2 0.1 1 1 2e-05 0.0021 11.2 0.1 36 62 20 46 4 50 0.80 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_41 - 724 TraG-D_C PF12696.2 128 1.5e-20 67.3 0.0 1 1 1.4e-22 2.8e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 3_11 - 389 AAA_31 PF13614.1 157 2e-09 31.5 0.0 1 2 1.4e-08 2.8e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_11 - 389 AAA_31 PF13614.1 157 2e-09 31.5 0.0 2 2 0.00018 0.037 7.9 0.1 110 152 227 268 223 272 0.84 # 7188 # 8354 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 6_9 - 232 NTPase_1 PF03266.10 168 0.0002 15.0 0.1 1 2 3.4e-05 0.0071 10.0 0.0 2 44 39 83 38 91 0.80 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 NTPase_1 PF03266.10 168 0.0002 15.0 0.1 2 2 0.0042 0.87 3.2 0.0 87 151 153 219 115 230 0.73 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_33 PF13671.1 143 0.00078 13.3 1.4 1 1 3.1e-05 0.0063 10.3 1.4 2 19 39 56 38 214 0.73 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_13 - 519 Methyltransf_26 PF13659.1 117 2.6e-12 40.8 0.0 1 1 1.6e-13 1.1e-11 38.8 0.0 3 114 220 354 218 358 0.73 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 14_3 - 188 Methyltransf_26 PF13659.1 117 5e-12 39.8 0.1 1 1 1.3e-13 9.2e-12 39.0 0.1 2 114 52 147 51 150 0.90 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_8 - 228 Methyltransf_26 PF13659.1 117 1.8e-11 38.1 0.0 1 2 6.2e-07 4.2e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_8 - 228 Methyltransf_26 PF13659.1 117 1.8e-11 38.1 0.0 2 2 2.9e-07 2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 8_6 - 252 FmrO PF07091.6 251 4.4e-82 268.7 0.0 1 1 2.4e-84 5e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 5373 # 6128 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_42 - 1757 AAA_30 PF13604.1 196 6.2e-42 137.3 1.5 1 2 2.8e-05 0.0019 11.7 3.8 7 147 420 552 416 562 0.84 # 31208 # 36478 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_42 - 1757 AAA_30 PF13604.1 196 6.2e-42 137.3 1.5 2 2 9e-44 6.2e-42 137.3 1.5 1 186 968 1156 968 1160 0.94 # 31208 # 36478 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 6_9 - 232 AAA_30 PF13604.1 196 0.00022 14.8 0.4 1 1 5.6e-06 0.00038 14.0 0.4 18 58 36 76 29 202 0.87 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_41 - 724 AAA_30 PF13604.1 196 0.0017 11.8 0.0 1 1 5.4e-05 0.0037 10.8 0.0 21 57 188 224 180 230 0.85 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_19 - 54 FtsK_SpoIIIE PF01580.13 205 2.4e-06 21.1 0.1 1 1 3.5e-08 2.4e-06 21.1 0.1 27 66 7 47 1 50 0.83 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_23 - 876 FtsK_SpoIIIE PF01580.13 205 2.3e-05 17.9 0.1 1 2 6.1e-06 0.00042 13.7 0.0 39 63 476 504 463 507 0.84 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_23 - 876 FtsK_SpoIIIE PF01580.13 205 2.3e-05 17.9 0.1 2 2 0.034 2.3 1.5 0.0 75 166 530 625 529 637 0.79 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 6_9 - 232 FtsK_SpoIIIE PF01580.13 205 0.00027 14.4 0.0 1 1 1.1e-05 0.00078 12.9 0.0 37 60 35 58 14 77 0.81 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 7_6 - 304 TIGR02075 TIGR02075 233 0.00088 12.5 0.1 1 2 0.013 2.7 1.1 0.0 5 90 8 98 4 128 0.67 # 4717 # 5628 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 7_6 - 304 TIGR02075 TIGR02075 233 0.00088 12.5 0.1 2 2 0.0001 0.021 8.0 0.1 135 166 206 236 158 252 0.70 # 4717 # 5628 # 1 # ID=7_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 14_3 - 188 MTS PF05175.9 170 2.2e-07 24.3 0.0 1 1 3e-09 3e-07 23.9 0.0 24 141 45 149 41 166 0.85 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_13 - 519 MTS PF05175.9 170 8.9e-06 19.1 0.8 1 1 2.6e-07 2.7e-05 17.5 0.0 31 140 217 355 201 374 0.82 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 6_9 - 232 ABC_tran PF00005.22 137 4.9e-36 118.0 0.0 1 1 6.9e-38 7.1e-36 117.5 0.0 1 136 26 171 26 172 0.92 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 5_7 - 713 ABC_tran PF00005.22 137 6.2e-07 23.7 0.5 1 2 0.00069 0.071 7.3 1.2 19 37 29 47 16 174 0.64 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 5_7 - 713 ABC_tran PF00005.22 137 6.2e-07 23.7 0.5 2 2 3.1e-05 0.0032 11.7 0.0 87 136 398 452 283 453 0.74 # 6337 # 8475 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 6_9 - 232 ATP-synt_ab PF00006.20 215 0.00055 13.4 0.1 1 1 8.3e-06 0.0017 11.8 0.1 8 35 29 56 23 74 0.86 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_8 - 228 Cons_hypoth95 PF03602.10 183 2.7e-05 17.5 0.0 1 2 0.00041 0.085 6.1 0.0 112 146 18 54 8 81 0.66 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_8 - 228 Cons_hypoth95 PF03602.10 183 2.7e-05 17.5 0.0 2 2 4e-05 0.0083 9.4 0.0 41 62 162 183 145 218 0.78 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 2_13 - 519 Eco57I PF07669.6 106 9.7e-07 23.1 0.1 1 2 2.3e-07 4.7e-05 17.7 0.0 3 104 294 406 291 408 0.81 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 2_13 - 519 Eco57I PF07669.6 106 9.7e-07 23.1 0.1 2 2 0.014 2.9 2.2 0.1 54 85 412 444 409 461 0.79 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 1_42 - 1757 AAA_19 PF13245.1 76 3.1e-07 24.0 2.4 1 1 8.9e-09 9.2e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 31208 # 36478 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 6_9 - 232 AAA_19 PF13245.1 76 0.00038 14.1 0.1 1 1 3.6e-05 0.0037 11.0 0.0 10 54 36 75 29 87 0.75 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_23 - 876 AAA_10 PF12846.2 304 3.7e-49 161.7 0.0 1 1 1.2e-50 6.2e-49 160.9 0.0 1 294 479 768 479 774 0.89 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_41 - 724 AAA_10 PF12846.2 304 2.2e-10 34.3 0.0 1 1 8e-11 4.1e-09 30.2 0.0 3 296 187 494 186 500 0.69 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 232 AAA_10 PF12846.2 304 2.7e-05 17.6 0.0 1 1 1.3e-06 6.9e-05 16.3 0.0 4 29 39 65 37 85 0.76 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_19 - 54 AAA_10 PF12846.2 304 0.00035 14.0 0.0 1 1 7.8e-06 0.0004 13.8 0.0 2 25 20 43 19 47 0.87 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 6_9 - 232 SbcCD_C PF13558.1 90 1.8e-05 18.6 0.2 1 1 1.3e-06 0.00027 14.8 0.2 32 89 143 187 126 188 0.76 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_15 - 1039 ResIII PF04851.10 184 3.2e-36 118.8 0.7 1 1 8.9e-38 1.8e-35 116.3 0.1 3 183 271 439 269 440 0.90 # 9380 # 12496 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.437 14_3 - 188 Methyltransf_31 PF13847.1 152 1.5e-05 18.6 0.0 1 1 1.9e-07 1.9e-05 18.2 0.0 5 119 52 162 48 183 0.82 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_13 - 519 Methyltransf_31 PF13847.1 152 0.00025 14.6 0.0 1 1 6.8e-06 0.0007 13.1 0.0 3 84 217 308 215 378 0.68 # 6422 # 7978 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.455 2_15 - 1039 DEAD PF00270.24 169 6.3e-09 29.5 0.0 1 1 1e-10 2.1e-08 27.8 0.0 22 142 308 424 293 441 0.75 # 9380 # 12496 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.437 1_41 - 724 TrwB_AAD_bind PF10412.4 386 4.1e-150 493.5 0.0 1 1 7.4e-152 5.1e-150 493.2 0.0 2 386 172 561 171 561 0.99 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_23 - 876 TrwB_AAD_bind PF10412.4 386 8.4e-07 21.8 0.1 1 2 7.2e-08 4.9e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_23 - 876 TrwB_AAD_bind PF10412.4 386 8.4e-07 21.8 0.1 2 2 0.061 4.2 -0.3 0.0 261 317 713 769 685 772 0.92 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_19 - 54 TrwB_AAD_bind PF10412.4 386 0.00012 14.7 0.0 1 1 2e-06 0.00013 14.5 0.0 5 42 9 46 6 50 0.88 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_42 - 1757 AAA_11 PF13086.1 236 0.00039 13.9 3.3 1 1 2.7e-06 0.00056 13.4 0.0 2 75 969 1039 968 1060 0.80 # 31208 # 36478 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_41 - 724 T4SS-DNA_transf PF02534.9 469 1.4e-09 30.9 0.0 1 1 3.7e-11 3.8e-09 29.5 0.0 264 362 382 477 198 507 0.83 # 29037 # 31208 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_23 - 876 T4SS-DNA_transf PF02534.9 469 6.1e-05 15.6 0.0 1 2 0.00044 0.045 6.2 0.0 105 185 533 607 470 623 0.86 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_23 - 876 T4SS-DNA_transf PF02534.9 469 6.1e-05 15.6 0.0 2 2 0.00022 0.022 7.2 0.0 319 378 711 769 663 771 0.90 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 14_3 - 188 TIGR00755 TIGR00755 256 3.3e-07 23.4 0.0 1 1 2.1e-09 4.3e-07 23.0 0.0 8 86 29 106 25 127 0.88 # 2712 # 3275 # 1 # ID=14_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_8 - 228 MethyltransfD12 PF02086.10 260 0.00079 12.8 0.0 1 2 0.014 2.8 1.2 0.0 173 188 16 31 10 92 0.81 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_8 - 228 MethyltransfD12 PF02086.10 260 0.00079 12.8 0.0 2 2 4e-05 0.0082 9.5 0.0 20 46 163 189 148 197 0.78 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_19 - 54 Pox_A32 PF04665.7 241 9.3e-05 15.7 0.0 1 1 9.5e-07 9.8e-05 15.6 0.0 6 42 12 48 7 51 0.90 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_23 - 876 Pox_A32 PF04665.7 241 0.0017 11.5 0.0 1 1 4.6e-05 0.0047 10.1 0.0 7 38 473 504 469 519 0.85 # 13025 # 15652 # 1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 8_6 - 252 Methyltransf_23 PF13489.1 161 0.00074 13.2 0.0 1 1 5.3e-06 0.0011 12.6 0.0 7 52 89 132 82 198 0.78 # 5373 # 6128 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_19 - 54 RNA_helicase PF00910.17 107 0.0001 16.4 0.0 1 1 5.9e-07 0.00012 16.2 0.0 1 30 22 51 22 53 0.91 # 11592 # 11753 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 6_9 - 232 NACHT PF05729.7 166 0.00039 14.0 0.1 1 2 8.6e-06 0.0018 11.9 0.0 3 20 39 56 37 76 0.86 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 NACHT PF05729.7 166 0.00039 14.0 0.1 2 2 0.057 12 -0.5 0.0 91 115 168 192 154 215 0.75 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_25 PF13481.1 194 1.2e-05 18.6 0.0 1 2 5.1e-07 0.00011 15.6 0.0 29 58 32 62 14 131 0.78 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_25 PF13481.1 194 1.2e-05 18.6 0.0 2 2 0.017 3.5 0.9 0.0 161 188 175 201 165 206 0.69 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_8 - 228 Methyltransf_15 PF09445.5 164 0.0016 11.9 0.0 1 2 0.045 9.3 -0.3 0.0 53 79 4 29 2 32 0.90 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_8 - 228 Methyltransf_15 PF09445.5 164 0.0016 11.9 0.0 2 2 4.2e-05 0.0088 9.5 0.0 3 31 166 194 164 209 0.86 # 3380 # 4063 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 6_9 - 232 AAA_28 PF13521.1 163 1.5e-06 22.1 0.1 1 2 5.8e-07 0.00012 16.0 0.0 2 21 39 58 38 94 0.79 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 6_9 - 232 AAA_28 PF13521.1 163 1.5e-06 22.1 0.1 2 2 0.0029 0.59 4.0 0.0 19 79 111 168 104 174 0.63 # 8238 # 8933 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 2_2 - 78 TOBE_2 PF08402.5 75 1.7e-15 50.8 0.1 1 1 9e-18 1.9e-15 50.6 0.1 1 75 2 73 2 73 0.87 # 347 # 580 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bd95cbe8-06e6-4f02-9326-9300b91c6ef1 # Target file: checkm_output/bins/pm1044/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1044/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bd95cbe8-06e6-4f02-9326-9300b91c6ef1 checkm_output/bins/pm1044/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:42 2020 # [ok]