# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_83 - 258 Eno-Rase_NADH_b PF12242.3 78 0.00015 15.5 0.1 1 1 3e-06 0.00062 13.5 0.2 37 65 6 32 1 44 0.77 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_49 - 234 UPF0020 PF01170.13 180 7.4e-06 19.6 0.0 1 2 5.1e-05 0.011 9.3 0.0 103 120 17 34 5 81 0.84 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_49 - 234 UPF0020 PF01170.13 180 7.4e-06 19.6 0.0 2 2 9.4e-05 0.019 8.4 0.0 28 51 170 193 165 227 0.75 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_86 - 323 cobW PF02492.14 178 0.0012 12.2 0.0 1 1 1e-05 0.0022 11.4 0.0 3 32 43 72 41 84 0.89 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_57 - 402 MipZ PF09140.6 261 3.9e-06 20.0 0.0 1 2 0.0027 0.56 3.1 0.0 3 50 111 163 109 193 0.73 # 46767 # 47972 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_57 - 402 MipZ PF09140.6 261 3.9e-06 20.0 0.0 2 2 8.7e-07 0.00018 14.6 0.0 87 136 233 282 220 296 0.87 # 46767 # 47972 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_83 - 258 3HCDH_N PF02737.13 180 0.0007 13.2 1.1 1 2 9.2e-06 0.0019 11.8 0.5 6 70 15 80 9 94 0.78 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_83 - 258 3HCDH_N PF02737.13 180 0.0007 13.2 1.1 2 2 0.055 12 -0.5 0.0 12 30 169 187 162 231 0.71 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_2 - 145 SSB PF00436.20 104 1.5e-30 99.1 0.3 1 1 1.7e-32 1.8e-30 98.9 0.3 2 103 7 111 6 112 0.96 # 142 # 576 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_69 - 152 SSB PF00436.20 104 1.6e-28 92.6 0.4 1 1 2e-30 2e-28 92.3 0.4 26 99 2 76 1 84 0.95 # 57322 # 57777 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.627 5_1 - 1183 UvrD_C_2 PF13538.1 104 1.8e-07 25.3 0.3 1 1 5.6e-09 1.2e-06 22.6 0.1 3 102 769 872 762 874 0.75 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_21 - 880 DUF87 PF01935.12 229 4e-06 20.7 0.0 1 1 2.6e-07 2.7e-05 18.0 0.0 26 223 484 675 479 681 0.77 # 18804 # 21443 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 2_9 - 388 DUF87 PF01935.12 229 0.00019 15.2 0.0 1 1 3.6e-06 0.00038 14.2 0.0 28 45 157 174 155 188 0.89 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 AAA_22 PF13401.1 131 2e-14 47.8 0.2 1 1 7.3e-16 5e-14 46.5 0.2 3 129 39 170 35 172 0.81 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 AAA_22 PF13401.1 131 6e-06 20.4 0.0 1 1 2.1e-07 1.5e-05 19.1 0.0 4 30 152 178 149 243 0.84 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_23 - 1017 AAA_22 PF13401.1 131 0.00043 14.4 0.0 1 1 2e-05 0.0014 12.7 0.0 8 73 492 561 486 594 0.70 # 16838 # 19888 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_9 - 388 ATP_bind_1 PF03029.12 238 0.0017 11.8 0.0 1 1 1.3e-05 0.0027 11.2 0.0 1 25 157 181 157 191 0.84 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 PRK PF00485.13 194 0.00015 15.3 0.0 1 1 1.3e-06 0.00028 14.4 0.0 1 33 42 77 42 121 0.77 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 SRP54 PF00448.17 196 0.00083 12.8 0.0 1 1 7.4e-06 0.0015 11.9 0.0 3 31 42 70 40 77 0.88 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_49 - 234 N6_N4_Mtase PF01555.13 231 2e-32 106.4 0.0 1 2 5.8e-13 1.2e-10 35.2 0.0 1 113 21 130 21 137 0.85 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_49 - 234 N6_N4_Mtase PF01555.13 231 2e-32 106.4 0.0 2 2 2e-23 4.2e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_23 - 1017 AAA_17 PF13207.1 121 0.00013 16.8 0.0 1 1 8.5e-06 0.00089 14.0 0.0 3 27 492 522 492 581 0.72 # 16838 # 19888 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_86 - 323 AAA_17 PF13207.1 121 0.00032 15.5 0.0 1 1 8e-06 0.00083 14.1 0.0 1 24 42 69 42 154 0.68 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 Miro PF08477.8 119 0.002 12.6 0.0 1 1 2.1e-05 0.0044 11.5 0.0 4 28 157 186 156 220 0.72 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_9 - 388 MobB PF03205.9 140 0.001 12.7 0.0 1 1 2.1e-05 0.0022 11.7 0.0 4 25 156 177 154 190 0.85 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 MobB PF03205.9 140 0.0016 12.1 0.2 1 1 4e-05 0.0042 10.7 0.1 2 28 42 68 41 85 0.82 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 T2SE PF00437.15 272 5.9e-23 75.0 0.0 1 1 9.3e-25 9.6e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 T2SE PF00437.15 272 3.3e-05 16.8 0.2 1 1 6.5e-07 6.7e-05 15.8 0.2 111 160 23 71 7 132 0.87 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 SMC_N PF02463.14 220 0.0024 11.0 0.0 1 1 2.1e-05 0.0044 10.2 0.0 26 50 154 178 147 195 0.81 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 Arch_ATPase PF01637.13 234 2.7e-05 17.9 0.3 1 1 3e-07 6.3e-05 16.7 0.3 8 131 30 137 27 164 0.64 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 AAA_16 PF13191.1 185 3.8e-10 34.0 1.0 1 1 2.4e-10 1.2e-08 29.0 0.2 18 179 34 153 22 162 0.74 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 771 AAA_16 PF13191.1 185 5.9e-06 20.3 0.0 1 1 5.6e-07 2.9e-05 18.0 0.0 20 56 181 218 179 254 0.78 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 388 AAA_16 PF13191.1 185 0.0018 12.2 0.0 1 1 7.1e-05 0.0037 11.2 0.0 26 50 154 178 140 211 0.85 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 5_1 - 1183 AAA_16 PF13191.1 185 0.012 9.5 0.0 1 1 0.00023 0.012 9.5 0.0 24 48 416 440 402 459 0.86 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 2_9 - 388 AAA_23 PF13476.1 202 4.1e-06 21.2 0.1 1 1 4.2e-08 8.6e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 AAA_18 PF13238.1 129 4.7e-05 17.7 0.0 1 1 8.2e-07 8.5e-05 16.8 0.0 1 40 43 83 43 137 0.67 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_23 - 1017 AAA_18 PF13238.1 129 0.00018 15.8 1.3 1 1 7.1e-06 0.00074 13.8 0.0 2 19 492 509 492 571 0.76 # 16838 # 19888 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_83 - 258 adh_short PF00106.20 167 2.8e-24 79.8 2.1 1 1 2e-26 4.1e-24 79.3 2.1 3 166 10 175 8 176 0.89 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_57 - 402 CbiA PF01656.18 195 2.7e-18 60.0 0.0 1 1 2.8e-20 5.9e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 46767 # 47972 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_9 - 388 KaiC PF06745.8 227 0.0017 11.4 0.0 1 1 1.5e-05 0.003 10.6 0.0 14 59 147 191 137 201 0.76 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 AAA_14 PF13173.1 128 0.00026 14.9 0.1 1 1 5.8e-06 0.0012 12.7 0.1 2 75 40 138 39 172 0.53 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 AAA_29 PF13555.1 62 1.8e-05 18.1 0.1 1 1 2.2e-07 4.6e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 AAA PF00004.24 132 8.7e-06 19.9 0.0 1 1 9.6e-08 2e-05 18.7 0.0 3 74 45 140 43 178 0.76 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_83 - 258 KR PF08659.5 181 1.8e-11 37.9 2.5 1 1 1.8e-13 3.8e-11 36.9 2.5 4 162 11 170 9 190 0.79 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_38 - 278 N6_Mtase PF02384.11 311 6.9e-12 38.9 0.0 1 1 5.5e-14 1.1e-11 38.2 0.0 25 117 139 237 130 259 0.85 # 32064 # 32897 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 2_9 - 388 Ribosomal_S5 PF00333.15 67 6.3e-05 16.7 0.1 1 2 0.00091 0.19 5.5 0.0 26 45 84 103 76 114 0.83 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_9 - 388 Ribosomal_S5 PF00333.15 67 6.3e-05 16.7 0.1 2 2 0.00012 0.024 8.4 0.0 21 54 242 274 230 278 0.91 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_2 - 771 TraG-D_C PF12696.2 128 1.4e-19 64.2 0.0 1 1 3.1e-21 3.2e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_30 - 696 TraG-D_C PF12696.2 128 0.00028 14.7 0.1 1 1 4.7e-06 0.00049 13.9 0.1 3 94 437 524 435 556 0.78 # 27560 # 29647 # -1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_57 - 402 AAA_31 PF13614.1 157 0.0002 15.3 0.0 1 1 5.5e-06 0.0011 12.8 0.0 108 147 235 273 230 279 0.86 # 46767 # 47972 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_86 - 323 AAA_33 PF13671.1 143 0.00049 13.9 0.0 1 1 4.8e-06 0.00099 12.9 0.0 1 39 42 94 42 128 0.63 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 KTI12 PF08433.5 270 0.0008 12.6 0.0 1 1 6.2e-06 0.0013 11.9 0.0 3 32 42 71 41 131 0.86 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_49 - 234 Methyltransf_26 PF13659.1 117 5.1e-11 36.6 0.2 1 2 6e-07 6.2e-05 17.0 0.0 63 113 13 70 3 87 0.71 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_49 - 234 Methyltransf_26 PF13659.1 117 5.1e-11 36.6 0.2 2 2 3.9e-07 4.1e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_38 - 278 Methyltransf_26 PF13659.1 117 0.00011 16.2 0.1 1 1 2.6e-06 0.00027 14.9 0.1 3 70 171 243 170 270 0.82 # 32064 # 32897 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 5_1 - 1183 AAA_30 PF13604.1 196 1.4e-41 136.2 0.8 1 1 5.6e-43 5.8e-41 134.1 0.8 2 186 400 587 399 591 0.94 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_86 - 323 AAA_30 PF13604.1 196 0.00038 14.0 0.1 1 1 9.4e-06 0.00097 12.7 0.1 13 50 36 72 23 170 0.59 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 FtsK_SpoIIIE PF01580.13 205 0.00021 14.8 0.0 1 1 3.8e-06 0.0004 13.8 0.0 41 59 155 173 129 184 0.85 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_21 - 880 FtsK_SpoIIIE PF01580.13 205 0.00026 14.4 0.0 1 1 5.4e-06 0.00056 13.3 0.0 39 63 480 506 466 508 0.85 # 18804 # 21443 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_86 - 323 ABC_tran PF00005.22 137 2.7e-05 18.4 0.1 1 1 4.6e-07 4.8e-05 17.6 0.1 2 80 31 110 30 155 0.69 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 ABC_tran PF00005.22 137 0.00029 15.1 0.0 1 1 5.3e-06 0.00055 14.2 0.0 16 33 157 174 149 217 0.83 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_49 - 234 Cons_hypoth95 PF03602.10 183 7.5e-06 19.4 0.0 1 2 0.00015 0.031 7.6 0.0 113 169 19 77 12 86 0.71 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_49 - 234 Cons_hypoth95 PF03602.10 183 7.5e-06 19.4 0.0 2 2 3.1e-05 0.0065 9.8 0.0 20 60 149 188 142 225 0.73 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 5_1 - 1183 AAA_19 PF13245.1 76 5.3e-07 23.3 0.8 1 1 7.6e-09 5.3e-07 23.3 0.8 8 74 413 476 405 479 0.71 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_86 - 323 AAA_19 PF13245.1 76 0.00027 14.7 0.3 1 1 9.7e-06 0.00067 13.4 0.1 6 40 36 69 32 127 0.83 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_23 - 1017 AAA_19 PF13245.1 76 0.0011 12.7 0.0 1 1 4.8e-05 0.0034 11.1 0.0 14 31 492 508 481 518 0.90 # 16838 # 19888 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_83 - 258 NAD_binding_10 PF13460.1 183 7.7e-05 16.7 1.6 1 1 3.9e-06 0.00082 13.3 1.6 2 178 11 231 10 236 0.51 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_21 - 880 AAA_10 PF12846.2 304 3e-46 152.1 0.0 1 1 1.4e-47 4.8e-46 151.4 0.0 1 294 481 773 481 779 0.87 # 18804 # 21443 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 2_23 - 1017 AAA_10 PF12846.2 304 1.7e-40 133.2 0.1 1 1 1.1e-41 3.8e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 16838 # 19888 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 2_30 - 696 AAA_10 PF12846.2 304 1.3e-09 31.8 0.0 1 1 5.6e-11 1.9e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 27560 # 29647 # -1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_2 - 771 AAA_10 PF12846.2 304 4.5e-09 30.0 0.0 1 2 3.1e-05 0.0011 12.4 0.0 3 43 187 227 186 260 0.92 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_2 - 771 AAA_10 PF12846.2 304 4.5e-09 30.0 0.0 2 2 3.4e-06 0.00012 15.5 0.0 201 296 398 494 282 499 0.85 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_9 - 388 AAA_10 PF12846.2 304 3e-06 20.8 0.0 1 1 5e-07 1.7e-05 18.3 0.0 3 27 154 178 152 196 0.74 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 AAA_10 PF12846.2 304 3.4e-05 17.3 0.2 1 3 0.00058 0.02 8.2 0.0 3 29 42 68 40 101 0.84 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 AAA_10 PF12846.2 304 3.4e-05 17.3 0.2 2 3 0.0077 0.27 4.5 0.0 217 236 121 140 84 156 0.80 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 AAA_10 PF12846.2 304 3.4e-05 17.3 0.2 3 3 0.088 3.1 1.0 0.1 106 171 239 302 177 316 0.59 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_83 - 258 adh_short_C2 PF13561.1 241 4.3e-36 118.8 1.0 1 1 2.3e-38 4.8e-36 118.6 1.0 5 240 16 252 13 253 0.91 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 ResIII PF04851.10 184 0.00066 13.5 0.5 1 2 0.00043 0.09 6.5 0.3 10 64 28 80 21 114 0.74 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 ResIII PF04851.10 184 0.00066 13.5 0.5 2 2 0.00093 0.19 5.4 0.1 131 162 101 140 74 153 0.60 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 5_1 - 1183 Viral_helicase1 PF01443.13 234 0.00087 12.8 0.0 1 2 5.8e-05 0.012 9.0 0.0 1 22 419 440 419 516 0.79 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 5_1 - 1183 Viral_helicase1 PF01443.13 234 0.00087 12.8 0.0 2 2 0.015 3.1 1.1 0.0 184 234 826 875 754 875 0.61 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_86 - 323 DUF2075 PF09848.4 352 1e-05 18.6 0.0 1 1 1.4e-07 1.5e-05 18.0 0.0 2 96 41 137 40 175 0.71 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_23 - 1017 DUF2075 PF09848.4 352 0.00074 12.5 0.0 1 1 2.2e-05 0.0023 10.8 0.0 5 22 492 509 489 537 0.87 # 16838 # 19888 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_83 - 258 Epimerase PF01370.16 236 0.00015 15.2 0.2 1 1 2.5e-06 0.00052 13.4 0.2 2 227 11 238 10 248 0.69 # 69451 # 70224 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_12 - 287 Methyltransf_27 PF13708.1 194 2.8e-68 223.2 0.0 1 1 2.3e-70 4.7e-68 222.5 0.0 2 194 89 282 88 282 0.97 # 4245 # 5105 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 771 TrwB_AAD_bind PF10412.4 386 1.4e-148 488.5 0.0 1 1 3.4e-150 1.7e-148 488.2 0.0 2 386 172 561 171 561 0.99 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_30 - 696 TrwB_AAD_bind PF10412.4 386 3.9e-06 19.6 0.9 1 2 6.9e-05 0.0036 9.8 0.0 16 36 134 154 125 158 0.88 # 27560 # 29647 # -1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_30 - 696 TrwB_AAD_bind PF10412.4 386 3.9e-06 19.6 0.9 2 2 0.00037 0.019 7.4 0.1 93 140 235 281 229 303 0.80 # 27560 # 29647 # -1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_21 - 880 TrwB_AAD_bind PF10412.4 386 2.9e-05 16.7 0.1 1 1 1.5e-06 7.8e-05 15.3 0.0 16 94 482 556 474 569 0.72 # 18804 # 21443 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_86 - 323 TrwB_AAD_bind PF10412.4 386 0.00026 13.6 0.4 1 1 4.5e-05 0.0023 10.5 0.1 15 44 40 69 36 74 0.86 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 5_1 - 1183 AAA_11 PF13086.1 236 1.1e-05 19.1 2.6 1 2 2.3e-07 4.8e-05 16.9 0.0 2 72 400 467 399 497 0.83 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 5_1 - 1183 AAA_11 PF13086.1 236 1.1e-05 19.1 2.6 2 2 0.02 4.1 0.8 0.0 3 37 611 644 609 778 0.70 # 3 # 3551 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_2 - 771 T4SS-DNA_transf PF02534.9 469 2e-08 27.1 0.0 1 2 0.035 7.2 -1.1 0.0 128 199 260 330 249 359 0.73 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_2 - 771 T4SS-DNA_transf PF02534.9 469 2e-08 27.1 0.0 2 2 3.4e-10 7e-08 25.3 0.0 275 393 393 507 363 559 0.74 # 1835 # 4147 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_86 - 323 ArgK PF03308.11 267 0.00073 12.3 0.2 1 2 2.4e-05 0.0051 9.5 0.0 13 58 24 69 16 74 0.89 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 ArgK PF03308.11 267 0.00073 12.3 0.2 2 2 0.018 3.8 0.1 0.0 51 84 116 149 110 156 0.85 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_21 - 880 Pox_A32 PF04665.7 241 0.00015 15.0 0.0 1 1 1.5e-06 0.00032 14.0 0.0 6 40 474 508 470 523 0.82 # 18804 # 21443 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_86 - 323 PIF1 PF05970.9 364 3.5e-06 20.1 0.0 1 1 3.4e-08 7e-06 19.1 0.0 7 126 27 148 23 166 0.73 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 GTP_EFTU PF00009.22 188 0.0022 11.4 0.0 1 1 2e-05 0.0041 10.5 0.0 8 34 157 183 155 195 0.87 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_9 - 388 RNA_helicase PF00910.17 107 0.0023 12.1 0.0 1 1 2.5e-05 0.0051 10.9 0.0 3 26 157 180 156 197 0.81 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_86 - 323 UPF0079 PF02367.12 123 6.1e-05 16.6 0.0 1 1 5.4e-07 0.00011 15.7 0.0 5 78 30 103 26 119 0.80 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_86 - 323 NACHT PF05729.7 166 0.00046 13.8 0.0 1 1 9.3e-06 0.00097 12.7 0.0 1 32 41 72 41 143 0.73 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 2_9 - 388 NACHT PF05729.7 166 0.0007 13.2 0.0 1 1 1.3e-05 0.0014 12.3 0.0 4 29 156 181 154 188 0.83 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 2_9 - 388 AAA_25 PF13481.1 194 1.2e-05 18.7 0.0 1 1 1.3e-07 2.7e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 5577 # 6740 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_49 - 234 Methyltransf_15 PF09445.5 164 0.0016 12.0 0.0 1 2 0.023 4.8 0.6 0.0 53 80 4 30 2 38 0.91 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_49 - 234 Methyltransf_15 PF09445.5 164 0.0016 12.0 0.0 2 2 7e-05 0.015 8.8 0.0 3 30 173 200 171 213 0.90 # 38791 # 39492 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_86 - 323 AAA_5 PF07728.9 139 3.3e-05 17.6 0.2 1 1 6.6e-07 0.00014 15.6 0.2 5 90 46 149 43 154 0.94 # 71686 # 72654 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/916f0014-5a3c-4248-90a2-d59c191494e8 # Target file: checkm_output/bins/pm1040/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1040/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/916f0014-5a3c-4248-90a2-d59c191494e8 checkm_output/bins/pm1040/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:40 2020 # [ok]