# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 402 MipZ PF09140.6 261 9.6e-07 20.0 0.0 1 2 0.0027 0.14 3.1 0.0 3 50 111 163 109 193 0.73 # 1725 # 2930 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_3 - 402 MipZ PF09140.6 261 9.6e-07 20.0 0.0 2 2 8.7e-07 4.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 1725 # 2930 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_4 - 301 3HCDH_N PF02737.13 180 1.3e-07 23.4 0.7 1 1 1.1e-08 5.4e-07 21.3 0.7 1 40 6 45 6 116 0.91 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 GIDA PF01134.17 392 0.0026 8.6 3.4 1 1 7e-05 0.0036 8.1 3.4 2 72 7 78 6 90 0.89 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 F420_oxidored PF03807.12 96 1.1e-06 21.0 0.6 1 1 6.5e-08 3.3e-06 19.5 0.2 2 78 7 79 6 98 0.82 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_3 - 402 CbiA PF01656.18 195 7.7e-19 59.8 0.0 1 1 2.8e-20 1.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 1725 # 2930 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_13 - 129 Ribosomal_S20p PF01649.13 84 0.00014 14.2 0.1 1 1 4.8e-06 0.00025 13.4 0.1 6 59 56 109 53 118 0.75 # 10815 # 11201 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 2_4 - 301 NAD_binding_11 PF14833.1 122 2.4e-38 122.9 0.3 1 2 0.029 1.5 0.9 1.1 8 53 96 141 92 153 0.85 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 NAD_binding_11 PF14833.1 122 2.4e-38 122.9 0.3 2 2 4.7e-40 2.4e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 NAD_binding_2 PF03446.10 163 2.2e-41 133.3 3.7 1 1 6.4e-43 3.3e-41 132.8 3.7 2 162 5 166 4 167 0.96 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_3 - 402 AAA_31 PF13614.1 157 4.8e-05 15.3 0.0 1 1 5.5e-06 0.00028 12.8 0.0 108 147 235 273 230 279 0.86 # 1725 # 2930 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_4 - 301 Methyltransf_26 PF13659.1 117 0.0013 10.8 6.3 1 1 4.6e-05 0.0023 9.9 6.3 13 105 14 155 6 246 0.76 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 2-Hacid_dh_C PF02826.14 178 5.4e-07 20.9 0.1 1 1 1.9e-08 9.8e-07 20.0 0.1 36 146 4 118 2 124 0.86 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 3.7e-06 18.4 0.2 1 2 2e-06 0.0001 13.7 0.1 2 39 6 43 5 50 0.92 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 UDPG_MGDP_dh_N PF03721.9 185 3.7e-06 18.4 0.2 2 2 0.0061 0.31 2.3 0.0 107 139 86 117 82 126 0.77 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 TrkA_N PF02254.13 116 1.7e-05 16.8 0.0 1 1 8e-07 4.1e-05 15.6 0.0 1 42 7 48 7 79 0.86 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 AlaDh_PNT_C PF01262.16 168 6.7e-05 14.5 1.6 1 2 4.2e-06 0.00021 12.8 0.1 21 66 5 50 2 62 0.90 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_4 - 301 AlaDh_PNT_C PF01262.16 168 6.7e-05 14.5 1.6 2 2 0.028 1.4 0.4 0.2 13 42 84 113 72 117 0.84 # 2105 # 3007 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a9ca65c3-8a22-45e8-aa1f-2582b6937f51 # Target file: checkm_output/bins/pm1036/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1036/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a9ca65c3-8a22-45e8-aa1f-2582b6937f51 checkm_output/bins/pm1036/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:37 2020 # [ok]