# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 63 SSB PF00436.20 104 8e-08 22.4 0.0 1 1 6e-09 9e-08 22.3 0.0 71 104 19 51 10 51 0.93 # 687 # 875 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.545 1_10 - 307 THF_DHG_CYH_C PF02882.14 161 5.8e-70 223.7 1.4 1 1 5.3e-71 7.9e-70 223.3 1.4 1 159 124 284 124 286 0.99 # 8155 # 9075 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.600 1_11 - 288 TIGR00460 TIGR00460 315 3.3e-18 55.7 0.0 1 1 3.5e-19 5.2e-18 55.0 0.0 57 177 142 263 126 276 0.89 # 9196 # 10059 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b413623c-3491-45d9-abe9-e7f1bbc20dd3 # Target file: checkm_output/bins/pm1034/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1034/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b413623c-3491-45d9-abe9-e7f1bbc20dd3 checkm_output/bins/pm1034/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:36 2020 # [ok]