# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 537 AAA_22 PF13401.1 131 1.6e-06 17.3 0.6 1 2 0.00062 0.0037 6.4 0.1 4 22 42 60 37 72 0.90 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_22 PF13401.1 131 1.6e-06 17.3 0.6 2 2 0.00016 0.00097 8.3 0.0 88 116 249 287 157 301 0.67 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 ATP_bind_1 PF03029.12 238 3.7e-05 12.2 1.0 1 1 1.4e-05 8.6e-05 11.0 0.1 1 26 47 72 47 77 0.89 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_15 PF13175.1 415 3.1e-12 35.1 20.5 1 3 3.2e-10 1.9e-09 25.8 5.7 1 166 20 180 20 206 0.66 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_15 PF13175.1 415 3.1e-12 35.1 20.5 2 3 7.5e-08 4.5e-07 18.0 7.8 227 411 74 296 72 300 0.76 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_15 PF13175.1 415 3.1e-12 35.1 20.5 3 3 0.024 0.14 -0.1 3.4 107 197 419 509 332 535 0.58 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_21 PF13304.1 303 5.2e-22 68.0 0.3 1 2 8.6e-23 5.2e-22 68.0 0.3 1 297 44 295 44 300 0.85 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_21 PF13304.1 303 5.2e-22 68.0 0.3 2 2 0.022 0.13 1.0 2.4 94 202 419 528 380 531 0.64 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 SMC_N PF02463.14 220 1.3e-17 52.6 2.7 1 1 1.2e-17 7e-17 50.3 2.7 2 208 20 306 19 313 0.76 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_23 PF13476.1 202 8.1e-11 31.5 16.1 1 1 3.2e-10 1.9e-09 27.0 16.1 2 133 23 176 22 536 0.79 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_14 PF13173.1 128 1.1e-05 14.3 3.0 1 3 0.00014 0.00086 8.2 0.0 2 31 42 76 41 145 0.62 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_14 PF13173.1 128 1.1e-05 14.3 3.0 2 3 0.003 0.018 3.9 0.0 52 96 245 294 223 307 0.71 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_14 PF13173.1 128 1.1e-05 14.3 3.0 3 3 0.064 0.38 -0.4 0.6 29 57 430 458 421 532 0.50 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_29 PF13555.1 62 3.4e-10 28.4 0.0 1 1 1.2e-10 7.2e-10 27.3 0.0 17 52 36 72 30 81 0.80 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA PF00004.24 132 2.1e-09 26.7 0.2 1 2 0.007 0.042 3.0 0.0 3 21 47 65 45 128 0.84 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA PF00004.24 132 2.1e-09 26.7 0.2 2 2 3.1e-08 1.8e-07 20.4 0.1 30 112 224 297 187 310 0.77 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 NTPase_1 PF03266.10 168 3.5e-06 15.7 1.3 1 2 0.0006 0.0036 5.9 0.1 3 27 46 70 44 74 0.85 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 NTPase_1 PF03266.10 168 3.5e-06 15.7 1.3 2 2 0.00012 0.00071 8.2 0.1 86 140 244 302 189 314 0.71 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 DUF2813 PF11398.3 373 6.2e-06 14.3 0.0 1 1 1.8e-06 1.1e-05 13.5 0.0 23 82 43 106 20 138 0.72 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 ABC_tran PF00005.22 137 2.1e-12 36.5 0.1 1 1 2.3e-12 1.4e-11 33.8 0.0 12 134 43 262 36 264 0.81 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_19 PF13245.1 76 2.4e-05 13.0 0.0 1 1 1.1e-05 6.6e-05 11.7 0.0 10 36 42 67 35 78 0.83 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_10 PF12846.2 304 3.4e-05 12.2 1.7 1 2 0.00092 0.0055 5.0 0.3 4 21 45 62 42 71 0.86 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 AAA_10 PF12846.2 304 3.4e-05 12.2 1.7 2 2 0.00059 0.0035 5.6 0.0 213 262 247 296 117 305 0.77 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 NACHT PF05729.7 166 3e-05 12.7 0.0 1 2 6e-05 0.00036 9.1 0.0 2 28 44 70 43 101 0.70 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_5 - 537 NACHT PF05729.7 166 3e-05 12.7 0.0 2 2 0.02 0.12 0.9 0.0 78 128 251 295 192 316 0.74 # 2715 # 4325 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a5b3e3f7-ebac-4eab-8036-d8ad4441b72c # Target file: checkm_output/bins/pm1028/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1028/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a5b3e3f7-ebac-4eab-8036-d8ad4441b72c checkm_output/bins/pm1028/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:31 2020 # [ok]