# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_26 - 188 Methyltransf_12 PF08242.7 99 9.1e-06 18.9 0.0 1 1 1.7e-07 1.6e-05 18.2 0.0 1 99 55 144 55 144 0.86 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_17 - 228 UPF0020 PF01170.13 180 2.3e-05 16.8 0.0 1 2 0.00052 0.048 6.0 0.0 103 117 17 31 6 78 0.84 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 228 UPF0020 PF01170.13 180 2.3e-05 16.8 0.0 2 2 6.6e-05 0.0061 8.9 0.0 28 54 163 188 158 220 0.67 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_26 - 188 RrnaAD PF00398.15 262 4.9e-09 28.3 0.0 1 1 6.9e-11 6.3e-09 28.0 0.0 9 113 29 128 24 148 0.89 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_28 - 180 SSB PF00436.20 104 5.7e-41 131.5 0.5 1 1 7.8e-43 7.2e-41 131.1 0.5 1 101 6 109 6 112 0.96 # 25262 # 25801 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.589 1_26 - 188 Methyltransf_18 PF12847.2 112 5.1e-11 36.0 0.0 1 1 1.2e-12 1.1e-10 34.9 0.0 4 109 53 146 50 148 0.89 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_68 - 1757 UvrD_C_2 PF13538.1 104 3.7e-08 26.3 0.8 1 2 0.013 1.2 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 59058 # 64328 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_68 - 1757 UvrD_C_2 PF13538.1 104 3.7e-08 26.3 0.8 2 2 1.2e-08 1.1e-06 21.5 0.2 3 102 1341 1444 1339 1446 0.78 # 59058 # 64328 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_51 - 877 DUF87 PF01935.12 229 9.9e-08 24.8 0.0 1 1 6.5e-09 3e-07 23.2 0.0 26 222 483 670 469 677 0.77 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_46 - 107 DUF87 PF01935.12 229 0.00044 12.9 0.0 1 1 1.4e-05 0.00066 12.3 0.0 25 50 74 99 72 103 0.91 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_80 - 519 AAA_22 PF13401.1 131 2.4e-07 23.8 0.1 1 2 0.00018 0.0082 9.1 0.0 6 27 38 59 34 89 0.85 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_22 PF13401.1 131 2.4e-07 23.8 0.1 2 2 2.3e-05 0.001 12.0 0.1 69 121 209 265 165 275 0.77 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_46 - 107 AAA_22 PF13401.1 131 0.00086 12.3 0.0 1 1 3.3e-05 0.0015 11.5 0.0 3 27 71 95 66 103 0.86 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_80 - 519 MutS_V PF00488.16 235 3.5e-05 16.1 1.2 1 2 3e-05 0.0027 9.9 0.1 37 67 32 60 5 64 0.78 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 MutS_V PF00488.16 235 3.5e-05 16.1 1.2 2 2 0.0013 0.12 4.4 0.1 117 177 222 281 209 301 0.71 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_15 PF13175.1 415 5e-14 44.9 20.0 1 2 4.8e-09 4.4e-07 22.0 5.1 2 91 15 146 14 177 0.63 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_15 PF13175.1 415 5e-14 44.9 20.0 2 2 3.4e-10 3.1e-08 25.8 10.5 285 410 148 268 137 272 0.75 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_17 - 228 N6_N4_Mtase PF01555.13 231 8.5e-36 116.3 0.0 1 2 1.7e-14 1.6e-12 40.2 0.0 1 114 21 124 21 137 0.87 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 228 N6_N4_Mtase PF01555.13 231 8.5e-36 116.3 0.0 2 2 5.7e-25 5.2e-23 74.5 0.0 169 228 141 200 127 203 0.90 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_80 - 519 AAA_17 PF13207.1 121 0.00026 14.6 0.0 1 1 4.1e-05 0.0019 11.8 0.0 3 25 40 66 39 122 0.84 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_67 - 742 AAA_17 PF13207.1 121 0.0003 14.4 0.0 1 1 2.4e-05 0.0011 12.6 0.0 3 27 189 217 187 262 0.68 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_80 - 519 AAA_21 PF13304.1 303 6.4e-23 74.8 11.5 1 1 3.1e-23 1.4e-21 70.4 8.0 1 297 38 268 38 272 0.64 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_12 - 892 AAA_21 PF13304.1 303 3.1e-07 23.3 0.0 1 2 4.8e-05 0.0022 10.7 0.0 2 72 286 347 285 362 0.75 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_12 - 892 AAA_21 PF13304.1 303 3.1e-07 23.3 0.0 2 2 5.8e-05 0.0027 10.4 0.0 146 300 667 835 656 838 0.74 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_51 - 877 MobB PF03205.9 140 0.00024 13.6 0.2 1 2 5.4e-05 0.0025 10.3 0.0 4 37 484 516 482 524 0.79 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_51 - 877 MobB PF03205.9 140 0.00024 13.6 0.2 2 2 0.069 3.2 0.3 0.0 25 64 696 733 691 745 0.86 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_12 - 892 MobB PF03205.9 140 0.00059 12.4 0.0 1 1 2.9e-05 0.0013 11.2 0.0 4 20 287 303 284 316 0.83 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_40 - 120 CTP_transf_2 PF01467.21 157 0.00073 12.4 0.0 1 1 8.5e-06 0.00078 12.3 0.0 31 64 6 38 1 93 0.70 # 34748 # 35107 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_46 - 107 T2SE PF00437.15 272 0.00073 11.2 0.0 1 1 1.4e-05 0.0013 10.4 0.0 109 154 56 98 45 103 0.79 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_46 - 107 Zeta_toxin PF06414.7 201 0.0012 10.7 0.1 1 1 1.7e-05 0.0016 10.4 0.1 14 39 70 95 59 102 0.80 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_80 - 519 SMC_N PF02463.14 220 2.4e-15 49.1 3.0 1 2 6.5e-10 3e-08 25.9 0.1 2 45 14 57 13 62 0.92 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 SMC_N PF02463.14 220 2.4e-15 49.1 3.0 2 2 3.8e-09 1.7e-07 23.4 0.4 135 208 181 279 132 289 0.68 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_12 - 892 SMC_N PF02463.14 220 7.2e-11 34.5 0.0 1 1 1e-11 4.6e-10 31.8 0.0 16 217 275 851 267 853 0.91 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 519 Arch_ATPase PF01637.13 234 4.7e-07 22.5 0.6 1 2 8.4e-06 0.00078 11.9 0.0 7 42 24 58 19 115 0.89 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 Arch_ATPase PF01637.13 234 4.7e-07 22.5 0.6 2 2 0.00012 0.011 8.2 0.5 103 163 212 267 137 284 0.82 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_67 - 742 AAA_16 PF13191.1 185 4e-06 19.7 0.0 1 1 8.1e-07 1.9e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_80 - 519 AAA_16 PF13191.1 185 0.00022 14.0 0.1 1 2 0.00015 0.0034 10.1 0.0 27 46 39 58 34 67 0.86 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_16 PF13191.1 185 0.00022 14.0 0.1 2 2 0.08 1.8 1.2 0.0 138 166 215 243 183 266 0.72 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_46 - 107 AAA_16 PF13191.1 185 0.00026 13.8 0.0 1 1 1.8e-05 0.00042 13.1 0.0 22 51 70 99 64 104 0.90 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_12 - 892 AAA_16 PF13191.1 185 0.003 10.3 0.0 1 1 0.00013 0.003 10.3 0.0 29 51 288 310 282 323 0.83 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 519 AAA_23 PF13476.1 202 1.2e-12 41.4 0.8 1 1 5.3e-14 2.4e-12 40.3 0.1 1 177 16 236 16 295 0.60 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_12 - 892 AAA_23 PF13476.1 202 1.1e-08 28.5 0.0 1 1 4e-10 1.8e-08 27.7 0.0 12 150 276 473 263 597 0.63 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 519 AAA_14 PF13173.1 128 2.2e-06 20.4 0.1 1 2 0.00018 0.016 7.9 0.0 5 27 39 61 36 79 0.84 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_14 PF13173.1 128 2.2e-06 20.4 0.1 2 2 8e-05 0.0074 9.0 0.2 50 102 218 273 172 298 0.60 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_29 PF13555.1 62 1.4e-09 30.2 0.0 1 1 1e-10 4.6e-09 28.5 0.0 15 51 29 64 14 67 0.82 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_12 - 892 AAA_29 PF13555.1 62 3.1e-05 16.3 0.1 1 1 1.7e-06 7.7e-05 15.0 0.1 26 47 286 307 274 319 0.79 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_80 - 519 AAA PF00004.24 132 3e-07 23.5 0.2 1 2 0.00013 0.012 8.6 0.0 3 21 41 59 39 105 0.80 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA PF00004.24 132 3e-07 23.5 0.2 2 2 1.2e-05 0.0011 12.0 0.3 39 115 208 275 174 288 0.78 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_26 - 188 N6_Mtase PF02384.11 311 0.00022 13.1 0.0 1 2 3.4e-05 0.0031 9.3 0.0 28 62 32 66 21 75 0.89 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_26 - 188 N6_Mtase PF02384.11 311 0.00022 13.1 0.0 2 2 0.014 1.3 0.7 0.0 127 137 114 124 103 134 0.82 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_67 - 742 TraG-D_C PF12696.2 128 7.2e-21 67.2 0.0 1 1 1.4e-22 1.3e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_80 - 519 NTPase_1 PF03266.10 168 5.1e-05 15.8 0.5 1 2 0.0004 0.037 6.5 0.0 4 22 41 59 39 72 0.82 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 NTPase_1 PF03266.10 168 5.1e-05 15.8 0.5 2 2 0.00033 0.03 6.8 0.3 86 148 219 283 191 296 0.80 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_26 - 188 Methyltransf_26 PF13659.1 117 3.8e-14 45.5 0.1 1 1 1.5e-15 6.9e-14 44.7 0.1 2 114 52 147 51 150 0.90 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_17 - 228 Methyltransf_26 PF13659.1 117 7.2e-12 38.2 0.1 1 2 3e-07 1.4e-05 17.9 0.0 54 114 4 71 2 86 0.74 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 228 Methyltransf_26 PF13659.1 117 7.2e-12 38.2 0.1 2 2 2.4e-07 1.1e-05 18.3 0.0 4 44 167 206 164 221 0.83 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_5 - 252 FmrO PF07091.6 251 2e-82 268.7 0.0 1 1 2.4e-84 2.2e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 2131 # 2886 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_68 - 1757 AAA_30 PF13604.1 196 2.1e-44 144.2 13.5 1 2 2e-05 0.0006 12.2 3.5 7 147 420 552 416 562 0.84 # 59058 # 64328 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_68 - 1757 AAA_30 PF13604.1 196 2.1e-44 144.2 13.5 2 2 2.8e-43 8.7e-42 135.7 1.1 1 186 968 1156 968 1160 0.94 # 59058 # 64328 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_80 - 519 AAA_30 PF13604.1 196 0.00046 12.6 0.0 1 1 3.8e-05 0.0012 11.2 0.0 12 44 30 62 26 76 0.85 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_67 - 742 AAA_30 PF13604.1 196 0.00055 12.3 0.0 1 1 3.9e-05 0.0012 11.2 0.0 21 57 188 224 180 230 0.85 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_46 - 107 FtsK_SpoIIIE PF01580.13 205 2.7e-06 19.8 0.0 1 1 1.1e-07 3.2e-06 19.5 0.0 26 66 58 100 37 103 0.82 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_51 - 877 FtsK_SpoIIIE PF01580.13 205 3.8e-06 19.3 0.2 1 2 6.1e-06 0.00019 13.7 0.0 39 63 477 505 464 508 0.84 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_51 - 877 FtsK_SpoIIIE PF01580.13 205 3.8e-06 19.3 0.2 2 2 0.012 0.35 3.0 0.1 75 167 531 627 530 633 0.85 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_80 - 519 FtsK_SpoIIIE PF01580.13 205 0.00023 13.5 0.0 1 1 1.6e-05 0.00049 12.4 0.0 36 58 34 56 15 62 0.82 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_26 - 188 MTS PF05175.9 170 3.6e-09 29.0 0.0 1 1 5.5e-11 5e-09 28.5 0.0 24 141 45 149 41 166 0.84 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_26 - 188 Methyltrans_SAM PF10672.4 286 0.0008 11.0 0.0 1 1 1.2e-05 0.0011 10.6 0.0 196 261 113 173 99 180 0.79 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_26 - 188 Met_10 PF02475.11 200 0.00025 13.5 0.0 1 1 3.6e-06 0.00034 13.0 0.0 94 189 43 132 29 145 0.80 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_80 - 519 ABC_tran PF00005.22 137 1.6e-11 37.4 0.4 1 1 8.8e-12 4e-10 32.9 0.4 8 134 33 235 29 237 0.56 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_12 - 892 ABC_tran PF00005.22 137 1.1e-05 18.5 0.0 1 1 5.8e-07 2.7e-05 17.3 0.0 15 68 287 342 277 455 0.83 # 10767 # 13442 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_17 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.2 0.0 1 2 0.00051 0.047 5.8 0.0 112 127 18 33 4 81 0.70 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 228 Cons_hypoth95 PF03602.10 183 1.5e-05 17.2 0.0 2 2 3.8e-05 0.0035 9.5 0.0 41 62 162 183 145 219 0.77 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_68 - 1757 AAA_19 PF13245.1 76 2e-07 23.5 2.4 1 1 8.9e-09 4.1e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 59058 # 64328 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_80 - 519 AAA_19 PF13245.1 76 1.1e-05 18.0 0.0 1 1 6.1e-07 2.8e-05 16.7 0.0 9 37 35 62 30 73 0.85 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_51 - 877 AAA_10 PF12846.2 304 3.6e-49 160.5 0.0 1 1 2.7e-50 6.1e-49 159.8 0.0 1 294 480 769 480 775 0.88 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_67 - 742 AAA_10 PF12846.2 304 1.3e-10 33.9 0.0 1 1 1e-10 2.3e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_46 - 107 AAA_10 PF12846.2 304 5.1e-05 15.6 0.0 1 2 0.032 0.74 1.9 0.0 264 289 21 41 11 54 0.84 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_46 - 107 AAA_10 PF12846.2 304 5.1e-05 15.6 0.0 2 2 3e-05 0.0007 11.8 0.0 2 24 73 95 72 100 0.87 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_80 - 519 AAA_10 PF12846.2 304 0.00013 14.3 0.1 1 2 7.4e-05 0.0017 10.6 0.0 3 22 38 57 36 67 0.86 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_10 PF12846.2 304 0.00013 14.3 0.1 2 2 0.058 1.3 1.0 0.0 212 261 222 268 202 273 0.80 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_26 - 188 Methyltransf_31 PF13847.1 152 4.8e-07 22.3 0.0 1 1 6.4e-09 5.9e-07 22.0 0.0 5 119 52 162 48 183 0.83 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_67 - 742 TrwB_AAD_bind PF10412.4 386 2.4e-150 493.1 0.0 1 1 9.8e-152 3e-150 492.8 0.0 2 386 172 561 171 561 0.99 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_51 - 877 TrwB_AAD_bind PF10412.4 386 3.7e-07 21.8 0.1 1 2 7.2e-08 2.2e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_51 - 877 TrwB_AAD_bind PF10412.4 386 3.7e-07 21.8 0.1 2 2 0.061 1.9 -0.3 0.0 261 317 714 770 686 773 0.92 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_46 - 107 TrwB_AAD_bind PF10412.4 386 0.00015 13.2 0.0 1 2 0.086 2.6 -0.8 0.0 295 331 25 61 17 68 0.69 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_46 - 107 TrwB_AAD_bind PF10412.4 386 0.00015 13.2 0.0 2 2 1.1e-05 0.00034 12.0 0.0 6 42 63 99 59 103 0.88 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_68 - 1757 AAA_11 PF13086.1 236 8e-05 15.1 1.5 1 1 3.2e-06 0.0003 13.2 0.0 2 72 969 1036 968 1063 0.82 # 59058 # 64328 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_67 - 742 T4SS-DNA_transf PF02534.9 469 4.3e-10 31.4 0.0 1 1 2.1e-11 9.6e-10 30.3 0.0 250 361 362 476 198 500 0.76 # 56833 # 59058 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_51 - 877 T4SS-DNA_transf PF02534.9 469 0.00019 12.8 0.0 1 2 0.0031 0.14 3.3 0.0 105 184 534 607 471 626 0.82 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_51 - 877 T4SS-DNA_transf PF02534.9 469 0.00019 12.8 0.0 2 2 0.00021 0.0099 7.2 0.0 319 378 712 770 663 772 0.90 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 188 TIGR00755 TIGR00755 256 5.5e-09 28.1 0.0 1 1 8.1e-11 7.5e-09 27.7 0.0 8 105 29 123 25 134 0.90 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_17 - 228 MethyltransfD12 PF02086.10 260 0.00054 12.2 0.0 1 2 0.033 3 -0.1 0.0 176 188 19 31 8 38 0.81 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 228 MethyltransfD12 PF02086.10 260 0.00054 12.2 0.0 2 2 3.7e-05 0.0034 9.6 0.0 20 46 163 189 148 206 0.80 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_46 - 107 Pox_A32 PF04665.7 241 0.00011 14.3 0.0 1 2 0.078 3.6 -0.5 0.0 4 28 43 66 41 70 0.70 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_46 - 107 Pox_A32 PF04665.7 241 0.00011 14.3 0.0 2 2 5.6e-06 0.00026 13.1 0.0 7 42 66 101 60 104 0.89 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_51 - 877 Pox_A32 PF04665.7 241 0.00078 11.5 0.0 1 1 4.6e-05 0.0021 10.1 0.0 7 38 474 505 470 520 0.85 # 41441 # 44071 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_26 - 188 Methyltransf_23 PF13489.1 161 8.8e-05 15.1 0.0 1 1 2.2e-06 0.0001 14.8 0.0 11 120 40 153 10 174 0.79 # 23815 # 24378 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_5 - 252 Methyltransf_23 PF13489.1 161 0.00033 13.2 0.0 1 1 1.1e-05 0.00049 12.6 0.0 7 52 89 132 82 198 0.78 # 2131 # 2886 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_46 - 107 RNA_helicase PF00910.17 107 0.00014 14.8 0.0 1 1 2.7e-06 0.00025 14.0 0.0 1 29 75 103 75 106 0.91 # 38730 # 39050 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.433 1_80 - 519 AAA_24 PF13479.1 213 0.00098 11.5 0.9 1 3 0.0028 0.25 3.6 0.0 6 21 39 54 36 59 0.86 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_24 PF13479.1 213 0.00098 11.5 0.9 2 3 0.029 2.7 0.3 0.0 103 143 105 147 95 191 0.73 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_24 PF13479.1 213 0.00098 11.5 0.9 3 3 0.0023 0.21 3.9 0.1 114 156 247 291 238 307 0.74 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 NACHT PF05729.7 166 2.1e-06 20.3 0.0 1 2 3.6e-06 0.00033 13.1 0.0 3 41 39 78 37 92 0.80 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 NACHT PF05729.7 166 2.1e-06 20.3 0.0 2 2 0.0013 0.12 4.8 0.0 72 109 218 249 177 293 0.72 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_80 - 519 AAA_25 PF13481.1 194 0.00021 13.5 0.0 1 1 5.3e-06 0.00049 12.3 0.0 30 58 33 61 22 84 0.80 # 73905 # 75461 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_17 - 228 Methyltransf_15 PF09445.5 164 0.0002 13.7 0.0 1 2 0.0096 0.88 1.9 0.0 53 79 4 29 2 33 0.93 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 228 Methyltransf_15 PF09445.5 164 0.0002 13.7 0.0 2 2 4.2e-05 0.0039 9.5 0.0 3 31 166 194 164 209 0.86 # 17374 # 18057 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3381172c-2d1c-400f-a7e8-a19a8c11776d # Target file: checkm_output/bins/pm1025/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1025/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3381172c-2d1c-400f-a7e8-a19a8c11776d checkm_output/bins/pm1025/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:33 2020 # [ok]