# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 339 cobW PF02492.14 178 0.00037 11.8 0.0 1 1 1.3e-05 0.00065 11.1 0.0 3 39 155 190 153 198 0.67 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_30 - 218 MipZ PF09140.6 261 1.2e-12 39.3 1.2 1 2 3.6e-07 1.8e-05 15.8 0.4 2 26 3 27 2 46 0.80 # 23180 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_30 - 218 MipZ PF09140.6 261 1.2e-12 39.3 1.2 2 2 4.8e-09 2.4e-07 21.9 0.0 84 148 60 124 42 137 0.85 # 23180 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 2_6 - 327 UvrD_C_2 PF13538.1 104 0.00016 13.8 0.0 1 1 2.2e-05 0.0011 11.1 0.0 70 103 137 171 83 171 0.86 # 5059 # 6039 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_19 - 339 KAP_NTPase PF07693.9 325 9.1e-05 13.4 0.0 1 1 2.4e-06 0.00012 13.0 0.0 11 47 148 179 139 283 0.80 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 339 T2SE PF00437.15 272 1e-43 141.0 0.0 1 1 2.4e-45 1.2e-43 140.8 0.0 4 270 27 302 24 304 0.88 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_30 - 218 VirC1 PF07015.6 231 3.6e-06 18.1 0.0 1 2 0.00024 0.012 6.6 0.0 1 26 1 26 1 36 0.87 # 23180 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_30 - 218 VirC1 PF07015.6 231 3.6e-06 18.1 0.0 2 2 2.5e-05 0.0012 9.8 0.0 86 153 77 144 63 192 0.77 # 23180 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_19 - 339 AAA_16 PF13191.1 185 0.00027 12.8 0.0 1 1 1.1e-05 0.00056 11.8 0.0 11 63 141 191 138 220 0.69 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 339 AAA_23 PF13476.1 202 6.8e-05 15.1 0.0 1 1 4.4e-06 0.00022 13.5 0.0 18 39 151 172 138 193 0.88 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 339 AAA_18 PF13238.1 129 0.00031 13.0 0.1 1 1 1.6e-05 0.00076 11.7 0.0 3 19 157 173 156 207 0.78 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_30 - 218 CbiA PF01656.18 195 8.3e-12 36.8 1.3 1 1 5.1e-12 2.5e-10 31.9 1.3 1 189 4 170 4 174 0.71 # 23180 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_19 - 339 DUF258 PF03193.11 161 0.00011 13.3 0.0 1 1 3.9e-06 0.00019 12.5 0.0 23 71 139 188 120 197 0.79 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_21 - 680 TraG-D_C PF12696.2 128 7.3e-08 24.3 0.1 1 1 3.8e-09 1.8e-07 23.0 0.1 3 126 416 540 414 542 0.67 # 15239 # 17278 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_19 - 339 ABC_tran PF00005.22 137 1.2e-05 17.5 0.0 1 1 4.9e-07 2.4e-05 16.6 0.0 10 47 151 188 146 245 0.84 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_30 - 218 AAA_19 PF13245.1 76 0.00011 13.9 0.0 1 1 4.6e-06 0.00023 12.9 0.0 20 35 12 27 10 71 0.86 # 23180 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.563 1_14 - 860 AAA_10 PF12846.2 304 2.9e-31 100.8 0.3 1 1 1.7e-32 8.3e-31 99.3 0.1 6 303 479 770 475 771 0.86 # 8229 # 10808 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_19 - 339 UPF0079 PF02367.12 123 0.0002 12.9 0.0 1 2 0.03 1.5 0.4 0.0 11 48 50 90 43 93 0.84 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 339 UPF0079 PF02367.12 123 0.0002 12.9 0.0 2 2 3.8e-05 0.0019 9.8 0.0 14 41 151 178 138 185 0.77 # 12475 # 13491 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/21b330fc-588c-47b6-ac6d-30ccd7d3e479 # Target file: checkm_output/bins/pm1024/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1024/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/21b330fc-588c-47b6-ac6d-30ccd7d3e479 checkm_output/bins/pm1024/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:30 2020 # [ok]