# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_19 - 188 Methyltransf_12 PF08242.7 99 1.8e-05 18.1 0.0 1 1 3.1e-07 3.2e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_9 - 228 UPF0020 PF01170.13 180 2.5e-05 16.8 0.0 1 2 0.001 0.053 6.0 0.0 103 117 17 31 6 78 0.84 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_9 - 228 UPF0020 PF01170.13 180 2.5e-05 16.8 0.0 2 2 0.00013 0.0068 8.9 0.0 28 54 163 188 158 220 0.67 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_19 - 188 UPF0020 PF01170.13 180 0.00089 11.8 0.0 1 1 5.8e-05 0.003 10.1 0.0 18 43 40 65 32 130 0.71 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_19 - 188 RrnaAD PF00398.15 262 1.1e-08 27.3 0.0 1 1 1.4e-10 1.4e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 5_8 - 176 SSB PF00436.20 104 2.4e-41 132.8 0.4 1 1 3.4e-43 3.4e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=5_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_19 - 188 Methyltransf_18 PF12847.2 112 1.9e-10 34.3 0.0 1 1 3.9e-12 4e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_15 - 1757 UvrD_C_2 PF13538.1 104 1.3e-07 24.7 0.7 1 2 0.013 1.3 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_15 - 1757 UvrD_C_2 PF13538.1 104 1.3e-07 24.7 0.7 2 2 5.2e-08 5.3e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_34 - 877 DUF87 PF01935.12 229 2.4e-07 23.7 0.0 1 1 6.9e-09 7.1e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_9 - 228 N6_N4_Mtase PF01555.13 231 9.4e-36 116.3 0.0 1 2 1.7e-14 1.8e-12 40.2 0.0 1 114 21 124 21 137 0.87 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_9 - 228 N6_N4_Mtase PF01555.13 231 9.4e-36 116.3 0.0 2 2 5.7e-25 5.8e-23 74.5 0.0 169 228 141 200 127 203 0.90 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_16 - 751 AAA_17 PF13207.1 121 0.00034 14.4 0.0 1 1 8.9e-06 0.00091 13.0 0.0 3 28 189 218 187 303 0.70 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_4 - 892 AAA_21 PF13304.1 303 3.5e-07 23.3 0.0 1 2 2.4e-05 0.0024 10.7 0.0 2 72 286 347 285 362 0.75 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 2_4 - 892 AAA_21 PF13304.1 303 3.5e-07 23.3 0.0 2 2 2.9e-05 0.003 10.4 0.0 146 300 667 835 656 838 0.74 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 2_4 - 892 MobB PF03205.9 140 0.00065 12.4 0.0 1 1 4.3e-05 0.0015 11.2 0.0 4 20 287 303 284 316 0.83 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_34 - 877 MobB PF03205.9 140 0.00075 12.2 0.1 1 1 8.1e-05 0.0027 10.3 0.0 4 37 484 516 482 524 0.79 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_16 - 751 MobB PF03205.9 140 0.0011 11.6 0.0 1 1 8.1e-05 0.0028 10.3 0.0 7 34 192 219 188 225 0.89 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_4 - 892 SMC_N PF02463.14 220 8e-11 34.5 0.0 1 1 5e-12 5.1e-10 31.8 0.0 16 217 275 851 267 853 0.91 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_16 - 751 AAA_16 PF13191.1 185 4.4e-06 19.7 0.0 1 1 6.2e-07 2.1e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 123 AAA_16 PF13191.1 185 0.0014 11.6 0.1 1 1 6.8e-05 0.0023 10.8 0.1 22 48 86 112 80 119 0.88 # 36179 # 36547 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_4 - 892 AAA_16 PF13191.1 185 0.0033 10.3 0.0 1 1 9.6e-05 0.0033 10.3 0.0 29 51 288 310 282 323 0.83 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 2_4 - 892 AAA_23 PF13476.1 202 1.2e-08 28.5 0.0 1 1 2e-10 2e-08 27.7 0.0 12 150 276 473 263 597 0.63 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 2_19 - 188 Methyltransf_25 PF13649.1 101 0.00012 15.3 0.0 1 1 1.8e-06 0.00018 14.8 0.0 1 101 54 142 54 142 0.81 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_4 - 892 AAA_29 PF13555.1 62 3.4e-05 16.3 0.1 1 1 8.4e-07 8.5e-05 15.0 0.1 26 47 286 307 274 319 0.79 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_16 - 751 TraG-D_C PF12696.2 128 8.1e-21 67.2 0.0 1 1 1.4e-22 1.5e-20 66.3 0.0 1 127 419 541 419 542 0.86 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 123 KTI12 PF08433.5 270 0.00086 11.4 0.1 1 1 1.4e-05 0.0015 10.7 0.1 5 30 92 117 91 120 0.87 # 36179 # 36547 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_19 - 188 Methyltransf_26 PF13659.1 117 4.8e-14 45.4 0.0 1 1 1.6e-15 8.1e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_9 - 228 Methyltransf_26 PF13659.1 117 7.9e-12 38.2 0.1 1 2 3e-07 1.5e-05 17.9 0.0 54 114 4 71 2 86 0.74 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_9 - 228 Methyltransf_26 PF13659.1 117 7.9e-12 38.2 0.1 2 2 2.4e-07 1.2e-05 18.3 0.0 4 44 167 206 164 221 0.83 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 4_8 - 252 FmrO PF07091.6 251 2.2e-82 268.7 0.0 1 1 2.4e-84 2.5e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 6259 # 7014 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_15 - 1757 AAA_30 PF13604.1 196 1.8e-44 144.6 15.6 1 3 0.04 2.1 0.8 0.0 41 86 223 269 218 282 0.84 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_15 - 1757 AAA_30 PF13604.1 196 1.8e-44 144.6 15.6 2 3 1.9e-05 0.00098 11.6 3.9 7 146 420 551 416 561 0.81 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_15 - 1757 AAA_30 PF13604.1 196 1.8e-44 144.6 15.6 3 3 9.9e-44 5e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_16 - 751 AAA_30 PF13604.1 196 0.00064 12.2 0.0 1 1 2.7e-05 0.0014 11.2 0.0 21 57 188 224 180 230 0.85 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_34 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 1 2 2e-06 0.00021 13.7 0.0 39 63 477 505 464 508 0.84 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_34 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 2 2 0.015 1.6 1.1 0.0 75 166 531 626 530 669 0.82 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_19 - 188 MTS PF05175.9 170 8.8e-10 31.1 0.0 1 1 1.2e-11 1.2e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_19 - 188 Methyltrans_SAM PF10672.4 286 0.00074 11.3 0.0 1 1 9.9e-06 0.001 10.9 0.0 196 261 113 173 93 180 0.78 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_19 - 188 Met_10 PF02475.11 200 0.00089 11.8 0.0 1 1 1.1e-05 0.0011 11.4 0.0 98 189 47 132 29 145 0.78 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_4 - 892 ABC_tran PF00005.22 137 1.2e-05 18.5 0.0 1 1 2.9e-07 3e-05 17.3 0.0 15 68 287 342 277 455 0.83 # 2979 # 5654 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 2_9 - 228 Cons_hypoth95 PF03602.10 183 1.7e-05 17.2 0.0 1 2 0.00051 0.052 5.8 0.0 112 127 18 33 4 81 0.70 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_9 - 228 Cons_hypoth95 PF03602.10 183 1.7e-05 17.2 0.0 2 2 3.8e-05 0.0039 9.5 0.0 41 62 162 183 145 219 0.77 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_15 - 1757 AAA_19 PF13245.1 76 1.9e-07 23.8 2.0 1 1 1.1e-08 5.7e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_39 - 123 AAA_19 PF13245.1 76 0.00069 12.3 0.0 1 1 2.2e-05 0.0011 11.7 0.0 13 37 91 115 82 122 0.78 # 36179 # 36547 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_34 - 877 AAA_10 PF12846.2 304 4.2e-49 160.5 0.0 1 1 1.5e-50 7.5e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_16 - 751 AAA_10 PF12846.2 304 1.6e-10 33.8 0.0 1 1 6.4e-11 3.2e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_19 - 188 Methyltransf_31 PF13847.1 152 3.5e-07 22.9 0.0 1 1 4.2e-09 4.2e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_15 - 1757 Viral_helicase1 PF01443.13 234 0.00039 12.9 0.0 1 2 0.00014 0.014 7.8 0.0 1 118 988 1121 988 1212 0.52 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_15 - 1757 Viral_helicase1 PF01443.13 234 0.00039 12.9 0.0 2 2 0.0066 0.67 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_16 - 751 TrwB_AAD_bind PF10412.4 386 3.9e-150 492.6 0.0 1 1 9.4e-152 4.8e-150 492.3 0.0 2 386 172 561 171 561 0.99 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_34 - 877 TrwB_AAD_bind PF10412.4 386 5.5e-07 21.4 0.2 1 2 4.8e-08 2.4e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_34 - 877 TrwB_AAD_bind PF10412.4 386 5.5e-07 21.4 0.2 2 2 0.054 2.8 -0.7 0.1 261 317 714 770 706 773 0.92 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_15 - 1757 AAA_11 PF13086.1 236 0.00021 13.8 0.0 1 1 2.1e-06 0.00021 13.8 0.0 2 75 969 1039 968 1059 0.81 # 9647 # 14917 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_16 - 751 T4SS-DNA_transf PF02534.9 469 7.7e-10 30.8 0.0 1 1 3.9e-11 2e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 14917 # 17169 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_34 - 877 T4SS-DNA_transf PF02534.9 469 0.00033 12.2 0.0 1 2 0.0047 0.24 2.8 0.0 105 182 534 605 471 624 0.82 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_34 - 877 T4SS-DNA_transf PF02534.9 469 0.00033 12.2 0.0 2 2 0.00023 0.012 7.1 0.0 319 378 712 770 663 772 0.91 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_19 - 188 TIGR00755 TIGR00755 256 3.7e-09 28.8 0.0 1 1 4.9e-11 5e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 18266 # 18829 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_9 - 228 MethyltransfD12 PF02086.10 260 0.0006 12.2 0.0 1 2 0.033 3.3 -0.1 0.0 176 188 19 31 8 38 0.81 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_9 - 228 MethyltransfD12 PF02086.10 260 0.0006 12.2 0.0 2 2 3.7e-05 0.0038 9.6 0.0 20 46 163 189 148 206 0.80 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_34 - 877 Pox_A32 PF04665.7 241 0.00075 11.7 0.1 1 1 2.3e-05 0.0023 10.1 0.0 7 38 474 505 470 520 0.85 # 31413 # 34043 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 4_8 - 252 Methyltransf_23 PF13489.1 161 0.00037 13.2 0.0 1 1 5.3e-06 0.00054 12.6 0.0 7 52 89 132 82 198 0.78 # 6259 # 7014 # 1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_9 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.7 0.0 1 2 0.0096 0.98 1.9 0.0 53 79 4 29 2 33 0.93 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 2_9 - 228 Methyltransf_15 PF09445.5 164 0.00022 13.7 0.0 2 2 4.2e-05 0.0043 9.5 0.0 3 31 166 194 164 209 0.86 # 9586 # 10269 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4ddf11fb-d6c8-4a94-a1d5-718f944114f3 # Target file: checkm_output/bins/pm1018/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1018/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4ddf11fb-d6c8-4a94-a1d5-718f944114f3 checkm_output/bins/pm1018/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:28 2020 # [ok]