# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 37_1 - 231 IstB_IS21 PF01695.12 178 5.7e-69 225.3 0.1 1 1 1.4e-70 1.2e-68 224.2 0.1 1 173 34 208 34 213 0.97 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 12_8 - 92 IstB_IS21 PF01695.12 178 1.4e-14 48.1 0.0 1 1 2.3e-16 2e-14 47.7 0.0 134 174 42 82 36 85 0.92 # 3200 # 3475 # -1 # ID=12_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 5_11 - 78 IstB_IS21 PF01695.12 178 3e-13 43.8 0.0 1 1 3.6e-15 3.2e-13 43.7 0.0 1 62 11 72 11 77 0.92 # 4462 # 4695 # -1 # ID=5_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 6_2 - 400 MipZ PF09140.6 261 3.5e-08 27.1 0.1 1 2 0.0004 0.1 5.8 0.0 2 48 110 161 109 186 0.76 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 MipZ PF09140.6 261 3.5e-08 27.1 0.1 2 2 3.8e-08 9.8e-06 19.0 0.0 88 135 234 281 216 288 0.87 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 YhjQ PF06564.7 244 0.0013 12.3 0.7 1 3 0.076 20 -1.3 0.0 175 199 28 53 2 95 0.53 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 YhjQ PF06564.7 244 0.0013 12.3 0.7 2 3 0.038 9.9 -0.4 0.0 9 46 116 159 110 169 0.63 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 YhjQ PF06564.7 244 0.0013 12.3 0.7 3 3 3.7e-05 0.0097 9.5 0.0 106 183 235 311 215 322 0.78 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 2_9 - 950 UvrD_C_2 PF13538.1 104 3.9e-07 24.5 1.0 1 1 5e-08 6.6e-06 20.5 1.0 46 104 451 553 409 553 0.73 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 3_6 - 1413 UvrD_C_2 PF13538.1 104 6.3e-07 23.8 0.4 1 2 0.027 3.6 2.1 0.0 6 44 1097 1135 1093 1165 0.75 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 3_6 - 1413 UvrD_C_2 PF13538.1 104 6.3e-07 23.8 0.4 2 2 1.9e-07 2.5e-05 18.7 0.1 3 102 1211 1314 1209 1316 0.73 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 1_31 - 431 DUF87 PF01935.12 229 0.0005 14.2 0.1 1 1 7e-06 0.0018 12.3 0.0 24 45 153 174 152 183 0.92 # 26675 # 27967 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.393 37_1 - 231 AAA_22 PF13401.1 131 3.1e-06 21.6 0.1 1 1 2e-05 0.0013 13.2 0.1 6 28 82 104 77 181 0.61 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_9 - 950 AAA_22 PF13401.1 131 3.6e-05 18.2 0.0 1 2 0.00061 0.04 8.3 0.0 6 28 141 163 135 210 0.82 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 AAA_22 PF13401.1 131 3.6e-05 18.2 0.0 2 2 0.0022 0.14 6.5 0.0 74 124 301 349 266 355 0.73 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 1_31 - 431 AAA_22 PF13401.1 131 0.00049 14.5 0.0 1 1 9.3e-05 0.0061 11.0 0.0 9 66 157 235 151 280 0.70 # 26675 # 27967 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.393 4_4 - 411 AAA_22 PF13401.1 131 0.002 12.6 0.4 1 1 0.00049 0.032 8.7 0.0 12 85 241 326 239 394 0.77 # 1301 # 2533 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.556 24_2 - 87 Rad60-SLD PF11976.3 72 0.00028 14.8 0.1 1 1 1.5e-06 0.0004 14.3 0.1 12 39 41 68 33 77 0.83 # 474 # 734 # -1 # ID=24_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 3_11 - 505 AAA_17 PF13207.1 121 0.00042 15.4 0.0 1 1 3.9e-06 0.001 14.2 0.0 3 28 74 103 72 264 0.63 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_11 - 505 MobB PF03205.9 140 0.0017 12.4 0.0 1 1 1.2e-05 0.0032 11.5 0.0 7 34 77 104 72 110 0.89 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 6_2 - 400 ArsA_ATPase PF02374.10 305 0.0014 11.9 0.0 1 2 2.4e-05 0.0064 9.8 0.0 5 42 112 156 109 173 0.74 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 ArsA_ATPase PF02374.10 305 0.0014 11.9 0.0 2 2 0.068 18 -1.6 0.0 124 136 242 254 222 255 0.81 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 2_9 - 950 PhoH PF02562.11 205 1.7e-07 24.9 0.0 1 2 0.0022 0.29 4.6 0.0 22 37 142 157 131 166 0.83 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 PhoH PF02562.11 205 1.7e-07 24.9 0.0 2 2 2.5e-07 3.2e-05 17.5 0.0 122 173 317 369 309 394 0.83 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 37_1 - 231 PhoH PF02562.11 205 2.8e-07 24.2 0.1 1 1 7.3e-09 9.6e-07 22.5 0.0 11 47 72 108 61 116 0.79 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 38_1 - 139 Mur_ligase PF01225.20 83 0.00066 14.0 0.0 1 1 3.8e-06 0.001 13.4 0.0 8 49 60 107 58 131 0.76 # 300 # 716 # 1 # ID=38_1;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 2_9 - 950 Zeta_toxin PF06414.7 201 0.0005 13.5 0.1 1 1 1.9e-05 0.0025 11.2 0.0 12 46 134 168 125 175 0.74 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 3_11 - 505 Zeta_toxin PF06414.7 201 0.0017 11.7 0.0 1 1 3.9e-05 0.0051 10.2 0.0 20 49 74 104 64 117 0.85 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_9 - 383 RNA_pol_Rpb2_45 PF10385.4 66 0.00081 13.5 0.6 1 1 1.2e-05 0.0031 11.6 0.2 10 38 313 341 305 351 0.82 # 7584 # 8732 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.381 6_2 - 400 VirC1 PF07015.6 231 4e-05 17.0 0.0 1 2 0.0061 1.6 2.0 0.0 6 28 113 135 110 163 0.81 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 VirC1 PF07015.6 231 4e-05 17.0 0.0 2 2 3.3e-06 0.00086 12.7 0.0 51 136 210 297 206 334 0.86 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_31 - 431 Arch_ATPase PF01637.13 234 0.00021 15.3 0.0 1 1 3.8e-06 0.0005 14.0 0.0 25 129 157 253 140 264 0.65 # 26675 # 27967 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.393 37_1 - 231 Arch_ATPase PF01637.13 234 0.0019 12.2 0.1 1 1 5.9e-05 0.0077 10.2 0.0 8 37 68 97 65 117 0.79 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_9 - 950 AAA_16 PF13191.1 185 8.8e-06 20.1 0.2 1 1 5.8e-07 5e-05 17.6 0.0 23 173 138 338 118 347 0.56 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 3_11 - 505 AAA_16 PF13191.1 185 2.4e-05 18.6 0.0 1 1 7.8e-07 6.8e-05 17.2 0.0 21 57 67 104 64 147 0.84 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 37_1 - 231 AAA_16 PF13191.1 185 0.00021 15.6 0.1 1 1 8.2e-06 0.00071 13.8 0.1 21 41 77 97 64 119 0.77 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 6_2 - 400 CbiA PF01656.18 195 7.2e-22 72.0 0.0 1 1 4.5e-24 1.2e-21 71.3 0.0 1 144 111 294 111 321 0.74 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 2_9 - 950 AAA_14 PF13173.1 128 5.1e-07 23.9 0.0 1 2 4.6e-05 0.006 10.8 0.0 4 45 141 180 138 206 0.85 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 AAA_14 PF13173.1 128 5.1e-07 23.9 0.0 2 2 0.00011 0.014 9.6 0.0 30 101 278 353 263 360 0.66 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 37_1 - 231 AAA_14 PF13173.1 128 2.4e-06 21.7 0.0 1 1 3.2e-08 4.2e-06 21.0 0.0 2 96 80 181 79 203 0.68 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 AAA_29 PF13555.1 62 0.0017 12.2 0.0 1 1 1.2e-05 0.0031 11.3 0.0 19 59 76 117 67 119 0.72 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 AAA PF00004.24 132 4.3e-07 24.5 0.0 1 1 2.5e-09 6.6e-07 23.9 0.0 1 74 83 158 83 191 0.77 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 Bac_DnaA PF00308.13 219 2.2e-09 31.5 0.0 1 1 1.2e-11 3.1e-09 31.0 0.0 37 136 83 180 53 185 0.85 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_9 - 950 UvrD_C PF13361.1 351 2.5e-07 24.7 0.0 1 2 0.0068 1.8 2.1 0.1 2 32 381 411 380 465 0.66 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 UvrD_C PF13361.1 351 2.5e-07 24.7 0.0 2 2 3.4e-08 9e-06 19.6 0.0 293 347 476 553 472 556 0.69 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 37_1 - 231 Sigma54_activat PF00158.21 168 0.00031 14.5 0.1 1 1 6.6e-06 0.0017 12.1 0.1 18 53 76 111 60 175 0.71 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 DUF258 PF03193.11 161 2.7e-05 17.6 0.0 1 1 1.5e-07 3.9e-05 17.1 0.0 21 78 66 135 48 171 0.72 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 3_11 - 505 TraG-D_C PF12696.2 128 8.8e-21 68.4 0.0 1 1 7.5e-23 2e-20 67.3 0.0 1 127 304 426 304 427 0.86 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 6_2 - 400 AAA_31 PF13614.1 157 1.4e-07 25.8 0.1 1 2 0.00019 0.051 7.8 0.0 3 44 111 158 109 210 0.86 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 6_2 - 400 AAA_31 PF13614.1 157 1.4e-07 25.8 0.1 2 2 7e-07 0.00018 15.7 0.0 108 148 235 274 233 279 0.87 # 788 # 1987 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 37_1 - 231 NTPase_1 PF03266.10 168 0.0005 14.1 0.2 1 2 0.0014 0.36 4.8 0.1 2 30 83 111 82 131 0.83 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 NTPase_1 PF03266.10 168 0.0005 14.1 0.2 2 2 0.0002 0.052 7.5 0.0 88 112 135 159 121 182 0.72 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 3_6 - 1413 AAA_30 PF13604.1 196 3.7e-44 144.9 14.2 1 2 1.4e-05 0.0019 12.1 3.8 7 147 295 427 291 437 0.84 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 3_6 - 1413 AAA_30 PF13604.1 196 3.7e-44 144.9 14.2 2 2 3.9e-44 5.1e-42 137.9 1.3 1 187 838 1027 838 1031 0.94 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 2_9 - 950 AAA_30 PF13604.1 196 0.00016 15.5 0.3 1 2 0.00064 0.084 6.7 0.0 7 35 133 156 127 189 0.72 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 AAA_30 PF13604.1 196 0.00016 15.5 0.3 2 2 0.0011 0.14 6.0 0.0 90 133 306 353 286 414 0.85 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 1_10 - 581 KH_4 PF13083.1 73 0.00037 14.4 0.3 1 2 3.4e-05 0.0088 10.0 0.0 24 64 286 327 273 334 0.80 # 8695 # 10437 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_10 - 581 KH_4 PF13083.1 73 0.00037 14.4 0.3 2 2 0.019 5 1.2 0.1 38 46 432 440 428 441 0.90 # 8695 # 10437 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 37_1 - 231 ABC_tran PF00005.22 137 0.00033 15.2 0.3 1 2 2e-05 0.0027 12.3 0.0 8 30 77 99 71 114 0.86 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 ABC_tran PF00005.22 137 0.00033 15.2 0.3 2 2 0.089 12 0.5 0.1 108 134 122 150 105 152 0.74 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 1_31 - 431 ABC_tran PF00005.22 137 0.0006 14.4 0.0 1 1 9.3e-06 0.0012 13.4 0.0 6 37 147 178 144 247 0.77 # 26675 # 27967 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.393 1_31 - 431 ATP-synt_ab PF00006.20 215 1.3e-71 234.8 0.0 1 1 7.5e-74 2e-71 234.2 0.0 1 215 138 349 138 349 1.00 # 26675 # 27967 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.393 37_1 - 231 RuvB_N PF05496.7 234 0.00082 12.7 0.0 1 1 5.1e-06 0.0013 12.0 0.0 50 119 80 160 70 168 0.65 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 3_6 - 1413 AAA_19 PF13245.1 76 1.5e-07 25.4 1.3 1 1 1e-08 9.1e-07 22.9 0.3 7 76 851 917 844 917 0.74 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 37_1 - 231 AAA_19 PF13245.1 76 0.00099 13.2 0.0 1 1 2.6e-05 0.0023 12.0 0.0 10 37 81 107 74 132 0.81 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_9 - 950 AAA_19 PF13245.1 76 0.0011 13.0 0.0 1 1 3.9e-05 0.0034 11.4 0.0 9 35 137 164 132 188 0.77 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 3_11 - 505 AAA_10 PF12846.2 304 2.8e-10 34.3 0.0 1 1 3.7e-11 3.2e-09 30.9 0.0 3 296 72 379 71 385 0.67 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 37_1 - 231 AAA_10 PF12846.2 304 2e-05 18.4 0.8 1 2 2.4e-06 0.00021 15.1 0.1 1 33 80 112 80 149 0.88 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 AAA_10 PF12846.2 304 2e-05 18.4 0.8 2 2 0.066 5.7 0.5 0.0 202 247 120 170 113 180 0.68 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 1_31 - 431 AAA_10 PF12846.2 304 0.0006 13.5 0.1 1 1 2.1e-05 0.0018 12.0 0.1 5 51 156 208 153 424 0.71 # 26675 # 27967 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.393 2_9 - 950 AAA_12 PF13087.1 200 0.00018 15.2 0.0 1 2 9.5e-05 0.025 8.2 0.1 3 90 365 451 364 466 0.77 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 AAA_12 PF13087.1 200 0.00018 15.2 0.0 2 2 0.0008 0.21 5.2 0.0 143 196 465 553 423 556 0.67 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 37_1 - 231 ResIII PF04851.10 184 0.00061 13.9 0.0 1 2 7e-05 0.018 9.1 0.0 8 51 67 106 60 114 0.72 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 ResIII PF04851.10 184 0.00061 13.9 0.0 2 2 0.006 1.6 2.8 0.0 112 163 109 159 102 181 0.72 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 2_9 - 950 Viral_helicase1 PF01443.13 234 3.3e-12 40.7 1.5 1 3 0.0014 0.18 5.5 0.0 2 23 143 166 142 204 0.79 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 Viral_helicase1 PF01443.13 234 3.3e-12 40.7 1.5 2 3 1.3e-10 1.7e-08 28.5 0.2 35 202 288 490 270 498 0.82 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 Viral_helicase1 PF01443.13 234 3.3e-12 40.7 1.5 3 3 0.0044 0.58 3.8 0.0 215 232 535 552 524 554 0.76 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 3_6 - 1413 Viral_helicase1 PF01443.13 234 0.00046 14.0 0.0 1 2 0.00043 0.056 7.2 0.0 1 23 858 881 858 1062 0.74 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 3_6 - 1413 Viral_helicase1 PF01443.13 234 0.00046 14.0 0.0 2 2 0.0037 0.48 4.1 0.0 134 234 1214 1317 1196 1317 0.71 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 2_9 - 950 DUF2075 PF09848.4 352 1.7e-07 24.8 1.9 1 3 0.00041 0.11 5.7 0.0 5 25 143 163 141 214 0.78 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 DUF2075 PF09848.4 352 1.7e-07 24.8 1.9 2 3 3.1e-05 0.008 9.4 0.0 76 224 307 455 245 465 0.79 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 DUF2075 PF09848.4 352 1.7e-07 24.8 1.9 3 3 0.00016 0.042 7.0 0.0 314 349 519 553 510 556 0.79 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 15_2 - 125 Methyltransf_27 PF13708.1 194 0.00039 14.3 0.1 1 1 2e-06 0.00051 13.9 0.1 16 69 18 71 3 108 0.85 # 203 # 577 # -1 # ID=15_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.419 3_11 - 505 TrwB_AAD_bind PF10412.4 386 3.1e-148 487.7 0.0 1 1 1.4e-150 3.6e-148 487.5 0.0 2 386 57 446 56 446 0.99 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 3_6 - 1413 AAA_11 PF13086.1 236 0.00012 15.9 0.0 1 1 2.1e-06 0.00056 13.8 0.0 2 75 839 909 838 929 0.80 # 3010 # 7248 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 3_11 - 505 T4SS-DNA_transf PF02534.9 469 5.1e-10 32.7 0.0 1 1 4.3e-12 1.1e-09 31.6 0.0 214 362 212 362 83 386 0.77 # 8641 # 10155 # -1 # ID=3_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 2_9 - 950 Pox_A32 PF04665.7 241 0.0011 12.5 0.0 1 1 9.1e-06 0.0024 11.4 0.0 6 34 132 160 127 173 0.86 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 UvrD-helicase PF00580.16 315 2.1e-10 34.6 0.8 1 2 3.6e-05 0.0094 9.5 0.0 9 34 135 160 128 166 0.77 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 UvrD-helicase PF00580.16 315 2.1e-10 34.6 0.8 2 2 3.8e-09 9.8e-07 22.5 0.1 253 296 311 354 284 358 0.87 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 NACHT PF05729.7 166 0.0011 12.9 0.2 1 2 2.6e-05 0.0069 10.3 0.0 3 27 142 166 140 200 0.81 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 2_9 - 950 NACHT PF05729.7 166 0.0011 12.9 0.2 2 2 0.089 23 -1.2 0.0 13 65 444 499 442 508 0.77 # 6993 # 9842 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.510 37_1 - 231 AAA_25 PF13481.1 194 5.8e-05 16.8 0.0 1 1 3.3e-07 8.7e-05 16.2 0.0 22 58 68 105 49 161 0.79 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 AAA_28 PF13521.1 163 0.0041 11.3 2.3 1 2 0.095 25 -1.0 0.1 86 111 15 42 9 60 0.62 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 AAA_28 PF13521.1 163 0.0041 11.3 2.3 2 2 2.4e-05 0.0063 10.7 0.2 1 43 82 129 82 150 0.70 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 37_1 - 231 AAA_5 PF07728.9 139 0.00018 15.5 0.2 1 1 3e-06 0.00078 13.5 0.2 1 74 82 151 82 158 0.72 # 87 # 779 # -1 # ID=37_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/30e83c20-c9d9-4893-98c7-5aece39fc8b7 # Target file: checkm_output/bins/pm101/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm101/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/30e83c20-c9d9-4893-98c7-5aece39fc8b7 checkm_output/bins/pm101/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:22 2020 # [ok]