# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_73 - 143 Limkain-b1 PF11608.3 91 0.00058 12.7 0.0 1 1 7.5e-06 0.00085 12.2 0.0 41 74 13 46 7 68 0.89 # 56739 # 57167 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.627 1_107 - 402 MipZ PF09140.6 261 6.5e-06 18.4 0.0 1 2 0.0025 0.29 3.2 0.0 3 50 111 163 109 201 0.73 # 81848 # 83053 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_107 - 402 MipZ PF09140.6 261 6.5e-06 18.4 0.0 2 2 2.8e-06 0.00032 12.9 0.0 87 136 233 282 220 305 0.87 # 81848 # 83053 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_9 - 125 SSB PF00436.20 104 2.6e-25 81.5 0.4 1 1 6.2e-27 3.5e-25 81.0 0.4 44 103 2 64 1 65 0.94 # 4245 # 4619 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_8 - 66 SSB PF00436.20 104 2.8e-08 26.7 0.0 1 1 4.9e-10 2.8e-08 26.7 0.0 1 25 6 30 6 64 0.79 # 4100 # 4297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_51 - 1753 UvrD_C_2 PF13538.1 104 4.1e-07 23.2 0.4 1 1 3.5e-08 4e-06 20.1 0.1 3 102 1337 1440 1335 1442 0.78 # 36728 # 41986 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_32 - 883 DUF87 PF01935.12 229 1.6e-07 24.4 0.0 1 1 1.1e-08 6.4e-07 22.4 0.0 26 221 482 668 468 676 0.75 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_95 - 323 DUF87 PF01935.12 229 0.00068 12.6 0.2 1 1 0.0001 0.006 9.5 0.0 26 52 43 69 40 73 0.85 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 NB-ARC PF00931.17 287 0.00045 12.2 0.3 1 1 5.9e-06 0.00068 11.6 0.3 8 104 29 126 22 144 0.74 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 AAA_22 PF13401.1 131 5.7e-16 52.0 0.3 1 1 1.1e-17 1.3e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 PRK PF00485.13 194 0.00038 13.1 0.0 1 1 7e-06 0.0008 12.1 0.0 1 38 42 81 42 132 0.66 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_113 - 227 N6_N4_Mtase PF01555.13 231 3.8e-32 104.7 0.0 1 2 6.3e-15 7.2e-13 41.6 0.0 1 114 21 124 21 132 0.90 # 87517 # 88197 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_113 - 227 N6_N4_Mtase PF01555.13 231 3.8e-32 104.7 0.0 2 2 5.5e-21 6.3e-19 61.4 0.0 169 227 141 199 126 204 0.90 # 87517 # 88197 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_95 - 323 AAA_17 PF13207.1 121 0.00017 15.5 0.1 1 1 3.4e-06 0.00039 14.4 0.0 1 40 42 89 42 186 0.63 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 MobB PF03205.9 140 0.00036 13.3 0.1 1 1 2.2e-05 0.0013 11.6 0.0 2 31 42 70 41 86 0.78 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_32 - 883 MobB PF03205.9 140 0.001 11.9 0.1 1 1 5.6e-05 0.0032 10.3 0.0 4 37 483 515 481 522 0.79 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_95 - 323 T2SE PF00437.15 272 3e-06 19.3 0.7 1 1 1.3e-07 1.5e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 Arch_ATPase PF01637.13 234 4.2e-05 16.4 0.2 1 1 8.6e-07 9.8e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 AAA_16 PF13191.1 185 4.1e-11 36.3 1.2 1 1 9.1e-12 5.2e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_50 - 751 AAA_16 PF13191.1 185 0.00019 14.5 0.0 1 1 1.3e-05 0.00076 12.6 0.0 21 55 182 216 179 247 0.85 # 34476 # 36728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_95 - 323 AAA_18 PF13238.1 129 0.0001 15.7 0.0 1 1 1.7e-06 0.00019 14.8 0.0 1 23 43 90 43 138 0.67 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_107 - 402 CbiA PF01656.18 195 2.6e-18 59.2 0.0 1 1 4.6e-20 5.3e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 81848 # 83053 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_95 - 323 KaiC PF06745.8 227 0.00022 13.4 0.1 1 1 4.3e-06 0.00049 12.3 0.1 12 43 33 63 27 149 0.80 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 AAA_14 PF13173.1 128 4.7e-06 19.6 0.0 1 1 1.7e-07 2e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 AAA PF00004.24 132 1.7e-06 21.3 0.0 1 1 3.5e-08 4e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_50 - 751 TraG-D_C PF12696.2 128 9.9e-21 67.1 0.0 1 1 4.5e-22 5.1e-20 64.7 0.0 1 127 419 541 419 542 0.87 # 34476 # 36728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_107 - 402 AAA_31 PF13614.1 157 0.00051 13.1 0.1 1 2 0.071 8.1 -0.6 0.0 12 61 120 174 110 209 0.55 # 81848 # 83053 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_107 - 402 AAA_31 PF13614.1 157 0.00051 13.1 0.1 2 2 3.1e-05 0.0036 10.3 0.0 108 147 235 273 231 279 0.86 # 81848 # 83053 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_95 - 323 AAA_33 PF13671.1 143 0.00019 14.5 0.0 1 1 3.7e-06 0.00042 13.3 0.0 1 45 42 100 42 132 0.60 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_113 - 227 Methyltransf_26 PF13659.1 117 2.6e-09 30.3 0.0 1 2 1.4e-07 1.6e-05 18.0 0.0 60 114 10 71 3 74 0.69 # 87517 # 88197 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_113 - 227 Methyltransf_26 PF13659.1 117 2.6e-09 30.3 0.0 2 2 3.8e-05 0.0043 10.2 0.0 4 35 167 197 164 221 0.79 # 87517 # 88197 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_51 - 1753 AAA_30 PF13604.1 196 1e-42 139.0 22.2 1 3 0.038 2.2 0.9 0.0 41 86 223 269 218 282 0.84 # 36728 # 41986 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_51 - 1753 AAA_30 PF13604.1 196 1e-42 139.0 22.2 2 3 1.2e-05 0.00071 12.3 2.0 9 133 421 539 419 559 0.79 # 36728 # 41986 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_51 - 1753 AAA_30 PF13604.1 196 1e-42 139.0 22.2 3 3 2.9e-44 1.6e-42 138.3 1.0 1 191 967 1160 967 1163 0.95 # 36728 # 41986 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_95 - 323 AAA_30 PF13604.1 196 0.00018 14.2 0.3 1 1 9.7e-06 0.00056 12.6 0.3 15 128 38 164 27 170 0.55 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_32 - 883 FtsK_SpoIIIE PF01580.13 205 4.4e-05 16.1 0.1 1 2 2e-06 0.00023 13.7 0.0 39 63 476 504 463 507 0.84 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_32 - 883 FtsK_SpoIIIE PF01580.13 205 4.4e-05 16.1 0.1 2 2 0.054 6.1 -0.7 0.0 76 166 531 625 530 632 0.76 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_95 - 323 ABC_tran PF00005.22 137 8.1e-06 19.3 0.1 1 1 1.4e-07 1.6e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_51 - 1753 AAA_19 PF13245.1 76 4.6e-07 22.7 2.3 1 1 1.7e-08 9.4e-07 21.7 0.5 7 76 980 1046 973 1046 0.77 # 36728 # 41986 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_95 - 323 AAA_19 PF13245.1 76 7.3e-05 15.6 0.2 1 1 6.6e-06 0.00037 13.3 0.1 6 37 36 67 32 119 0.75 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_32 - 883 AAA_10 PF12846.2 304 6.4e-49 160.0 0.0 1 1 2.7e-50 1e-48 159.3 0.0 1 294 479 768 479 774 0.87 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_50 - 751 AAA_10 PF12846.2 304 8e-07 21.8 0.0 1 1 1.1e-06 4.1e-05 16.2 0.0 4 295 188 493 186 498 0.52 # 34476 # 36728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_95 - 323 AAA_10 PF12846.2 304 1.2e-06 21.3 0.1 1 2 1.3e-05 0.00048 12.7 0.0 3 34 42 73 40 106 0.73 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 AAA_10 PF12846.2 304 1.2e-06 21.3 0.1 2 2 0.0019 0.073 5.5 0.0 216 245 120 150 79 207 0.83 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 ResIII PF04851.10 184 1.1e-05 18.4 0.2 1 2 1.7e-05 0.002 11.1 0.3 29 101 44 110 20 121 0.72 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 ResIII PF04851.10 184 1.1e-05 18.4 0.2 2 2 0.00058 0.066 6.1 0.0 131 162 109 140 96 153 0.63 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_101 - 229 DUF3584 PF12128.3 1201 0.0023 8.3 40.6 1 1 3e-05 0.0034 7.8 40.6 336 533 9 209 4 224 0.72 # 78130 # 78816 # 1 # ID=1_101;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.574 1_95 - 323 DUF2075 PF09848.4 352 2e-06 20.0 0.1 1 1 5.2e-08 2.9e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_27 - 72 DUF2075 PF09848.4 352 0.00033 12.8 0.0 1 1 6.6e-06 0.00037 12.6 0.0 4 30 40 66 37 71 0.78 # 16135 # 16350 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.403 1_50 - 751 TrwB_AAD_bind PF10412.4 386 2e-145 477.3 0.0 1 1 6.6e-147 2.5e-145 476.9 0.0 2 386 172 561 171 561 0.99 # 34476 # 36728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_32 - 883 TrwB_AAD_bind PF10412.4 386 8.2e-07 21.0 0.2 1 2 8.9e-08 3.4e-06 18.9 0.0 15 52 479 516 470 546 0.84 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_32 - 883 TrwB_AAD_bind PF10412.4 386 8.2e-07 21.0 0.2 2 2 0.095 3.6 -0.9 0.0 261 317 713 769 707 772 0.92 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_95 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.4 0.5 1 2 5e-05 0.0019 9.9 0.0 14 44 39 69 35 76 0.83 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.4 0.5 2 2 0.063 2.4 -0.3 0.0 234 275 115 158 112 169 0.78 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_51 - 1753 AAA_11 PF13086.1 236 0.00058 12.5 0.0 1 1 5.1e-06 0.00058 12.5 0.0 2 75 968 1038 967 1059 0.80 # 36728 # 41986 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_50 - 751 T4SS-DNA_transf PF02534.9 469 5.8e-12 37.9 0.0 1 1 2.3e-13 1.3e-11 36.7 0.0 283 391 398 505 376 542 0.81 # 34476 # 36728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_32 - 883 T4SS-DNA_transf PF02534.9 469 0.00024 12.8 0.1 1 2 0.0023 0.13 3.8 0.0 105 185 533 607 529 622 0.82 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_32 - 883 T4SS-DNA_transf PF02534.9 469 0.00024 12.8 0.1 2 2 0.00033 0.019 6.6 0.0 321 378 713 769 665 771 0.93 # 18074 # 20722 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.572 1_27 - 72 ArgK PF03308.11 267 3.3e-05 15.8 0.0 1 1 3e-07 3.4e-05 15.8 0.0 25 59 33 67 17 70 0.82 # 16135 # 16350 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.403 1_95 - 323 PIF1 PF05970.9 364 3.2e-05 16.0 0.0 1 1 6.3e-07 7.2e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 UPF0079 PF02367.12 123 0.00013 14.7 0.0 1 1 2.2e-06 0.00025 13.8 0.0 3 45 28 70 26 114 0.84 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 NACHT PF05729.7 166 0.00055 12.7 0.2 1 1 1.1e-05 0.0013 11.5 0.2 1 28 41 68 41 140 0.77 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_95 - 323 AAA_5 PF07728.9 139 9.2e-05 15.3 0.1 1 1 7e-06 0.0008 12.2 0.2 5 90 46 149 43 152 0.85 # 72187 # 73155 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6b8a7400-2e62-4182-8cbb-2b1d362102c0 # Target file: checkm_output/bins/pm1008/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1008/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6b8a7400-2e62-4182-8cbb-2b1d362102c0 checkm_output/bins/pm1008/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:21 2020 # [ok]