# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 451 cobW PF02492.14 178 0.0012 11.2 0.9 1 2 0.011 1.2 1.5 0.0 128 161 71 104 43 114 0.76 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 cobW PF02492.14 178 0.0012 11.2 0.9 2 2 0.00013 0.014 7.9 0.2 2 21 175 194 174 207 0.88 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 Rad17 PF03215.10 519 0.00031 12.5 0.0 1 1 4.9e-06 0.00052 11.7 0.0 43 68 171 196 160 214 0.82 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_44 - 220 MipZ PF09140.6 261 1.4e-08 27.1 0.2 1 2 7.6e-05 0.0081 8.2 0.1 2 22 12 32 11 37 0.89 # 37712 # 38371 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_44 - 220 MipZ PF09140.6 261 1.4e-08 27.1 0.2 2 2 1.5e-07 1.6e-05 17.0 0.0 80 130 70 120 57 161 0.85 # 37712 # 38371 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_7 - 451 AAA_22 PF13401.1 131 1.2e-05 18.5 0.0 1 1 2.3e-07 2.4e-05 17.5 0.0 4 30 173 199 169 295 0.81 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 ATP_bind_2 PF03668.10 284 0.00064 11.8 0.0 1 2 9.1e-05 0.0097 7.9 0.0 3 24 175 196 174 201 0.93 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 ATP_bind_2 PF03668.10 284 0.00064 11.8 0.0 2 2 0.011 1.1 1.2 0.0 218 270 378 431 368 436 0.80 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_30 - 363 AAA_15 PF13175.1 415 0.002 10.2 0.0 1 1 2.6e-05 0.0028 9.7 0.0 25 84 61 112 37 118 0.85 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_7 - 451 AAA_17 PF13207.1 121 1.1e-05 19.3 0.0 1 1 2.4e-07 2.6e-05 18.1 0.0 1 23 175 197 175 251 0.88 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_30 - 363 AAA_21 PF13304.1 303 0.00075 12.5 0.0 1 1 1.6e-05 0.00086 12.3 0.0 2 72 61 124 60 200 0.87 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_31 - 306 AAA_21 PF13304.1 303 0.0012 11.8 0.0 1 1 2.5e-05 0.0013 11.6 0.0 232 300 183 249 75 252 0.77 # 27122 # 28039 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 1_30 - 363 Miro PF08477.8 119 0.0011 12.5 0.0 1 1 2.2e-05 0.0023 11.4 0.0 3 20 62 79 61 141 0.69 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_30 - 363 MobB PF03205.9 140 0.00014 14.6 0.0 1 1 2.8e-06 0.0003 13.5 0.0 4 23 62 80 59 110 0.77 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_7 - 451 T2SE PF00437.15 272 2.4e-43 140.9 0.0 1 1 6e-45 3.2e-43 140.5 0.0 10 270 44 322 38 324 0.85 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_97 - 179 T2SE PF00437.15 272 4.3e-19 61.4 0.1 1 1 1e-20 5.6e-19 61.0 0.1 184 270 11 99 2 101 0.81 # 79859 # 80395 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_7 - 451 Zeta_toxin PF06414.7 201 0.00094 11.3 0.0 1 1 1.6e-05 0.0017 10.4 0.0 18 38 175 195 167 204 0.88 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_30 - 363 SMC_N PF02463.14 220 4.2e-07 22.4 0.0 1 1 1.4e-08 7.3e-07 21.6 0.0 19 89 53 122 47 128 0.76 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_31 - 306 SMC_N PF02463.14 220 0.00036 12.8 0.0 1 1 7.1e-06 0.00038 12.7 0.0 136 216 187 264 8 267 0.73 # 27122 # 28039 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 1_7 - 451 AAA_16 PF13191.1 185 7.5e-05 15.8 0.1 1 1 3.4e-06 0.00018 14.5 0.1 12 46 165 195 158 204 0.78 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_30 - 363 AAA_16 PF13191.1 185 0.00011 15.2 1.4 1 2 1.9e-05 0.001 12.1 0.0 29 51 63 85 57 102 0.82 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_30 - 363 AAA_16 PF13191.1 185 0.00011 15.2 1.4 2 2 0.035 1.9 1.4 0.6 56 124 220 277 168 323 0.56 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_30 - 363 AAA_23 PF13476.1 202 1.6e-08 28.1 0.0 1 1 4.2e-10 2.2e-08 27.6 0.0 14 115 53 207 48 324 0.61 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_7 - 451 AAA_23 PF13476.1 202 4.9e-05 16.7 0.0 1 1 1.8e-06 9.7e-05 15.7 0.0 20 39 174 193 165 215 0.83 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 AAA_18 PF13238.1 129 7.9e-06 19.2 0.0 1 1 1.7e-07 1.8e-05 18.1 0.0 1 23 176 220 176 297 0.68 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_44 - 220 CbiA PF01656.18 195 7.5e-13 41.3 0.8 1 1 2e-14 2.2e-12 39.8 0.8 2 189 14 184 13 190 0.78 # 37712 # 38371 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_7 - 451 AAA_14 PF13173.1 128 0.00037 13.4 0.0 1 1 5.6e-06 0.00059 12.8 0.0 3 31 174 204 172 274 0.78 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_30 - 363 AAA_29 PF13555.1 62 7.7e-06 18.4 0.1 1 1 2.7e-07 1.5e-05 17.6 0.1 26 54 61 95 50 103 0.70 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_7 - 451 AAA_29 PF13555.1 62 2.7e-05 16.7 0.1 1 1 1.2e-06 6.7e-05 15.4 0.1 21 40 172 190 165 195 0.86 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_69 - 777 TraG-D_C PF12696.2 128 3.7e-07 23.1 0.1 1 1 6.2e-09 6.6e-07 22.3 0.1 1 127 439 557 439 558 0.73 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_7 - 451 AAA_33 PF13671.1 143 0.00024 14.0 0.0 1 1 9.1e-06 0.00097 12.0 0.0 1 19 175 193 175 275 0.92 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 AAA_30 PF13604.1 196 3.7e-07 22.9 0.0 1 1 1.3e-08 6.8e-07 22.0 0.0 4 42 159 197 156 211 0.90 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_82 - 233 AAA_30 PF13604.1 196 0.00082 12.0 0.0 1 1 2.6e-05 0.0014 11.2 0.0 21 42 51 72 42 83 0.86 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_82 - 233 FtsK_SpoIIIE PF01580.13 205 0.00047 12.6 0.0 1 1 1.2e-05 0.00063 12.2 0.0 40 64 50 74 10 85 0.74 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_7 - 451 FtsK_SpoIIIE PF01580.13 205 0.00074 12.0 0.0 1 1 3e-05 0.0016 10.9 0.0 41 58 176 193 156 241 0.82 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 VirE PF05272.6 198 0.00071 12.1 0.0 1 1 1.3e-05 0.0014 11.1 0.0 54 78 175 199 170 215 0.89 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_30 - 363 ABC_tran PF00005.22 137 2.1e-05 17.9 0.2 1 1 8.3e-07 4.4e-05 16.8 0.1 15 51 62 98 53 239 0.84 # 26034 # 27122 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.547 1_7 - 451 ABC_tran PF00005.22 137 2.7e-05 17.5 0.1 1 1 1.4e-06 7.5e-05 16.1 0.1 13 41 175 203 171 295 0.69 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 AAA_19 PF13245.1 76 0.00012 14.8 0.0 1 1 6.5e-06 0.00035 13.4 0.0 5 35 167 197 163 224 0.76 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_82 - 233 AAA_19 PF13245.1 76 0.00064 12.5 0.0 1 1 3.2e-05 0.0017 11.2 0.0 14 35 52 72 45 107 0.89 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_82 - 233 Helicase_RecD PF05127.9 177 0.00081 12.0 0.0 1 1 1.5e-05 0.0017 11.0 0.0 2 29 53 80 52 143 0.78 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_81 - 339 AAA_10 PF12846.2 304 8.6e-20 64.3 0.0 1 1 4.4e-21 1.2e-19 63.8 0.0 127 302 14 218 2 220 0.92 # 66960 # 67976 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.575 1_82 - 233 AAA_10 PF12846.2 304 1.2e-14 47.4 0.0 1 1 5.9e-16 1.6e-14 47.0 0.0 5 117 52 186 49 217 0.88 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_69 - 777 AAA_10 PF12846.2 304 9.9e-06 18.1 0.0 1 1 1e-06 2.7e-05 16.7 0.0 3 297 139 512 137 519 0.65 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_7 - 451 AAA_10 PF12846.2 304 0.00029 13.3 0.0 1 1 1.8e-05 0.00049 12.5 0.0 4 28 176 200 173 242 0.83 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_82 - 233 DUF2075 PF09848.4 352 0.00064 11.7 0.0 1 1 7.2e-06 0.00077 11.4 0.0 5 25 52 72 48 129 0.74 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_69 - 777 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.5 0.4 1 3 8.3e-05 0.0088 7.6 0.0 9 35 131 157 127 176 0.83 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_69 - 777 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.5 0.4 2 3 0.00012 0.013 7.1 0.0 92 139 238 284 232 294 0.82 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_69 - 777 TrwB_AAD_bind PF10412.4 386 2.2e-06 19.5 0.4 3 3 0.0097 1 0.8 0.1 293 375 485 566 441 571 0.65 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_69 - 777 T4SS-DNA_transf PF02534.9 469 8.1e-06 17.6 0.0 1 2 8.6e-06 0.00092 10.8 0.0 37 181 130 288 104 293 0.64 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_69 - 777 T4SS-DNA_transf PF02534.9 469 8.1e-06 17.6 0.0 2 2 0.0016 0.17 3.3 0.1 319 435 453 567 412 572 0.75 # 56869 # 59199 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_16 - 182 TIGR00922 TIGR00922 172 2.2e-06 20.3 0.0 1 1 2.2e-08 2.4e-06 20.2 0.0 55 128 73 146 23 166 0.82 # 12908 # 13453 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_7 - 451 NACHT PF05729.7 166 0.001 11.7 0.1 1 2 6.8e-05 0.0073 9.0 0.1 2 22 175 195 174 204 0.90 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 NACHT PF05729.7 166 0.001 11.7 0.1 2 2 0.038 4 0.0 0.0 52 138 318 346 289 365 0.55 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_7 - 451 AAA_25 PF13481.1 194 5.7e-05 15.6 0.1 1 1 2.6e-06 0.00014 14.3 0.0 18 58 157 198 147 267 0.83 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 1_82 - 233 AAA_25 PF13481.1 194 0.00067 12.1 0.0 1 1 1.8e-05 0.00096 11.6 0.0 37 65 52 84 34 184 0.74 # 67973 # 68671 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_7 - 451 AAA_5 PF07728.9 139 0.00093 11.9 0.1 1 1 2.1e-05 0.0023 10.7 0.0 2 24 176 202 175 265 0.86 # 3535 # 4887 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.557 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9e2b0831-7cbf-45bf-958c-2cbecd199347 # Target file: checkm_output/bins/pm1003/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1003/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9e2b0831-7cbf-45bf-958c-2cbecd199347 checkm_output/bins/pm1003/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:19 2020 # [ok]