# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 235 Pox_MCEL PF03291.11 332 5.3e-06 17.6 0.8 1 1 1.2e-07 7.5e-06 17.1 0.2 64 108 130 182 117 228 0.76 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_23 - 210 MipZ PF09140.6 261 6.2e-06 17.6 0.0 1 2 7.1e-07 4.3e-05 14.9 0.0 3 41 4 42 2 58 0.90 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_23 - 210 MipZ PF09140.6 261 6.2e-06 17.6 0.0 2 2 0.017 1 0.5 0.0 175 230 120 173 104 193 0.75 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_35 - 232 Methyltransf_18 PF12847.2 112 0.00034 13.4 0.1 1 1 4.4e-05 0.0013 11.5 0.0 6 45 134 178 130 229 0.66 # 26181 # 26876 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_36 - 235 Methyltransf_18 PF12847.2 112 0.00059 12.7 0.0 1 2 0.097 2.9 0.7 0.0 47 78 35 72 6 112 0.55 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_36 - 235 Methyltransf_18 PF12847.2 112 0.00059 12.7 0.0 2 2 0.00015 0.0047 9.8 0.0 5 42 132 175 130 213 0.77 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_27 - 709 DUF927 PF06048.6 286 1.1e-10 33.4 0.0 1 1 4.9e-12 3e-10 32.0 0.0 154 256 213 321 38 353 0.81 # 19626 # 21752 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_44 - 579 N6_N4_Mtase PF01555.13 231 5e-49 159.0 0.3 1 1 2.1e-50 1.3e-48 157.7 0.3 1 226 70 400 70 405 0.80 # 32169 # 33905 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 1_40 - 172 AAA_17 PF13207.1 121 0.00028 13.9 0.9 1 1 7.9e-06 0.00048 13.2 0.9 1 46 24 90 24 169 0.57 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_23 - 210 ArsA_ATPase PF02374.10 305 1.3e-06 19.8 0.0 1 2 7.8e-08 4.7e-06 18.0 0.1 9 39 10 40 3 45 0.95 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_23 - 210 ArsA_ATPase PF02374.10 305 1.3e-06 19.8 0.0 2 2 0.045 2.7 -0.9 0.0 143 165 90 117 67 150 0.40 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_45 - 971 PhoH PF02562.11 205 0.00012 13.6 0.0 1 1 5.2e-06 0.00032 12.2 0.0 18 72 76 131 66 163 0.83 # 33908 # 36820 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_40 - 172 T2SE PF00437.15 272 0.00015 12.9 0.9 1 1 4.9e-06 0.0003 11.9 0.9 120 150 14 44 3 54 0.81 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_40 - 172 Zeta_toxin PF06414.7 201 0.00025 12.3 0.0 1 1 7.6e-06 0.00047 11.5 0.0 10 44 15 50 5 62 0.76 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 149 Exonuc_V_gamma PF04257.9 805 0.00051 10.2 0.0 1 1 9.4e-06 0.00057 10.1 0.0 555 619 25 87 7 97 0.88 # 6133 # 6579 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.465 1_23 - 210 VirC1 PF07015.6 231 3.5e-05 15.1 0.2 1 2 2.5e-06 0.00015 13.1 0.0 4 41 4 41 1 56 0.82 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_23 - 210 VirC1 PF07015.6 231 3.5e-05 15.1 0.2 2 2 0.039 2.4 -0.7 0.0 60 86 126 152 112 158 0.88 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 172 AAA_23 PF13476.1 202 0.00046 12.7 5.6 1 1 1.6e-05 0.00095 11.7 5.6 11 137 9 162 1 170 0.54 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_23 - 210 CbiA PF01656.18 195 1.8e-14 45.8 0.1 1 1 1.2e-14 7.1e-13 40.6 0.1 1 178 4 145 4 163 0.71 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_40 - 172 AAA_14 PF13173.1 128 2.5e-05 16.4 0.5 1 2 1.1e-06 6.6e-05 15.1 0.2 2 99 22 117 21 128 0.64 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_40 - 172 AAA_14 PF13173.1 128 2.5e-05 16.4 0.5 2 2 0.054 3.3 -0.1 0.0 21 55 119 151 108 164 0.59 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_36 - 235 N6_Mtase PF02384.11 311 2.5e-11 35.3 0.0 1 1 2.3e-12 4.6e-11 34.5 0.0 3 103 87 192 86 208 0.73 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_35 - 232 N6_Mtase PF02384.11 311 3.2e-09 28.4 0.0 1 1 3e-10 6e-09 27.5 0.0 3 107 87 188 86 204 0.82 # 26181 # 26876 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_54 - 232 N6_Mtase PF02384.11 311 1.4e-08 26.3 0.0 1 1 1e-09 2.1e-08 25.7 0.0 4 121 97 217 91 229 0.82 # 40112 # 40807 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.368 1_40 - 172 DUF258 PF03193.11 161 0.00012 13.4 0.1 1 1 3e-06 0.00018 12.9 0.1 23 61 9 48 1 104 0.80 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_23 - 210 AAA_31 PF13614.1 157 2.4e-06 19.8 0.0 1 1 9.2e-08 5.6e-06 18.6 0.0 3 44 4 45 3 63 0.91 # 15736 # 16365 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_36 - 235 Methyltransf_26 PF13659.1 117 0.00026 13.3 0.1 1 2 0.051 1.6 1.1 0.0 35 112 33 112 26 113 0.54 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_36 - 235 Methyltransf_26 PF13659.1 117 0.00026 13.3 0.1 2 2 8.8e-05 0.0027 10.0 0.0 5 44 134 179 133 208 0.81 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_35 - 232 Methyltransf_26 PF13659.1 117 0.00029 13.1 0.1 1 1 2.8e-05 0.00084 11.6 0.0 5 52 134 187 132 209 0.77 # 26181 # 26876 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_36 - 235 MTS PF05175.9 170 2.2e-06 19.4 0.1 1 1 1.4e-07 4.1e-06 18.5 0.1 20 86 118 189 106 205 0.75 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_35 - 232 MTS PF05175.9 170 3.1e-05 15.6 0.0 1 1 2.1e-06 6.4e-05 14.6 0.0 34 86 132 189 118 201 0.75 # 26181 # 26876 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_44 - 579 Cons_hypoth95 PF03602.10 183 2.5e-05 15.9 1.2 1 2 1.1e-05 0.0007 11.2 0.0 95 128 49 83 29 96 0.66 # 32169 # 33905 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 1_44 - 579 Cons_hypoth95 PF03602.10 183 2.5e-05 15.9 1.2 2 2 0.0056 0.34 2.4 0.1 43 56 360 373 349 377 0.78 # 32169 # 33905 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.353 1_40 - 172 AAA_19 PF13245.1 76 0.00011 14.2 0.0 1 1 4e-06 0.00025 13.1 0.0 4 30 16 41 13 49 0.82 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_45 - 971 ResIII PF04851.10 184 4.4e-21 67.7 1.5 1 2 7.2e-23 4.4e-21 67.7 1.5 22 183 64 257 36 258 0.78 # 33908 # 36820 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_45 - 971 ResIII PF04851.10 184 4.4e-21 67.7 1.5 2 2 0.075 4.6 -0.8 0.1 52 83 425 461 415 490 0.53 # 33908 # 36820 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_36 - 235 Methyltransf_31 PF13847.1 152 1.6e-07 23.2 0.4 1 1 1.1e-08 3.3e-07 22.2 0.4 4 56 130 186 127 201 0.82 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_35 - 232 Methyltransf_31 PF13847.1 152 2e-07 22.9 0.1 1 1 1.1e-08 3.3e-07 22.2 0.1 7 70 133 201 130 229 0.83 # 26181 # 26876 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_45 - 971 DEAD PF00270.24 169 3e-07 22.3 0.1 1 2 2.1e-07 1.3e-05 17.0 0.0 16 133 78 233 66 263 0.62 # 33908 # 36820 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_45 - 971 DEAD PF00270.24 169 3e-07 22.3 0.1 2 2 0.015 0.91 1.2 0.0 113 146 688 721 648 732 0.77 # 33908 # 36820 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.357 1_36 - 235 PrmA PF06325.8 295 4.7e-05 14.8 0.2 1 1 2.3e-06 7e-05 14.2 0.2 166 213 134 187 115 204 0.75 # 26906 # 27610 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_35 - 232 PrmA PF06325.8 295 0.00033 12.0 0.0 1 1 1.5e-05 0.00045 11.5 0.0 165 213 133 187 108 202 0.79 # 26181 # 26876 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_40 - 172 Sigma54_activ_2 PF14532.1 138 7e-05 15.1 0.2 1 2 8e-06 0.00049 12.4 0.0 7 110 8 117 5 130 0.63 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_40 - 172 Sigma54_activ_2 PF14532.1 138 7e-05 15.1 0.2 2 2 0.021 1.3 1.3 0.0 62 98 122 159 105 165 0.75 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_1 - 87 DWNN PF08783.6 74 0.0002 13.5 0.0 1 1 4.1e-06 0.00025 13.2 0.0 9 59 16 66 13 74 0.79 # 1019 # 1279 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.444 1_31 - 304 MethyltransfD12 PF02086.10 260 7.6e-36 116.0 0.0 1 1 1.5e-37 9.1e-36 115.8 0.0 1 240 19 254 19 270 0.89 # 23874 # 24785 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_40 - 172 AAA_28 PF13521.1 163 2.9e-05 16.3 0.2 1 1 1e-06 6.2e-05 15.2 0.1 2 22 25 45 24 63 0.86 # 29839 # 30354 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/24a20cf6-6e1b-436a-b577-ef4822814100 # Target file: checkm_output/bins/pm1000/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1000/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/24a20cf6-6e1b-436a-b577-ef4822814100 checkm_output/bins/pm1000/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:14 2020 # [ok]