# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 256 MipZ PF09140.6 261 1.4e-10 32.1 2.3 1 1 2.8e-10 9.7e-09 26.0 1.6 2 126 4 151 3 160 0.68 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_21 - 256 YhjQ PF06564.7 244 1.2e-09 29.3 0.0 1 1 4.2e-11 1.5e-09 29.0 0.0 3 151 4 156 2 201 0.81 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_18 - 127 SSB PF00436.20 104 1.2e-18 58.4 0.2 1 1 4e-20 1.4e-18 58.2 0.2 2 92 7 101 6 118 0.92 # 14630 # 15010 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.302 1_21 - 256 SRP54 PF00448.17 196 0.00033 11.5 3.6 1 2 1.3e-05 0.00045 11.1 0.4 11 38 13 40 3 45 0.91 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_21 - 256 SRP54 PF00448.17 196 0.00033 11.5 3.6 2 2 0.018 0.62 0.9 0.2 68 98 108 137 90 190 0.68 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 2_3 - 647 Miro PF08477.8 119 4e-07 22.0 0.1 1 1 3.1e-08 1.1e-06 20.6 0.1 7 119 16 136 10 136 0.83 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_21 - 256 ArsA_ATPase PF02374.10 305 5.6e-10 30.1 6.2 1 1 1.3e-10 4.6e-09 27.1 6.2 5 137 7 133 3 229 0.74 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_21 - 256 VirC1 PF07015.6 231 0.0001 12.9 0.1 1 1 6.2e-06 0.00022 11.7 0.1 2 39 3 40 2 46 0.93 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_21 - 256 Fer4_NifH PF00142.13 273 1.1e-07 22.6 0.1 1 2 3.3e-09 1.1e-07 22.6 0.1 2 48 4 50 3 71 0.84 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_21 - 256 Fer4_NifH PF00142.13 273 1.1e-07 22.6 0.1 2 2 0.048 1.7 -0.9 1.2 195 219 139 163 112 216 0.63 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 1_21 - 256 CbiA PF01656.18 195 9.5e-31 98.1 1.9 1 1 3.2e-32 1.1e-30 97.9 1.9 1 194 5 225 5 226 0.78 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 2_3 - 647 TIGR03594 TIGR03594 432 3e-09 27.4 0.7 1 3 0.0088 0.31 1.0 0.2 200 232 50 82 2 82 0.64 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 2_3 - 647 TIGR03594 TIGR03594 432 3e-09 27.4 0.7 2 3 1.8e-08 6.2e-07 19.8 0.1 29 121 54 138 45 149 0.86 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 2_3 - 647 TIGR03594 TIGR03594 432 3e-09 27.4 0.7 3 3 0.00077 0.027 4.5 0.0 302 344 199 241 171 257 0.83 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 2_3 - 647 MMR_HSR1 PF01926.18 116 1.7e-08 25.9 0.1 1 1 1.2e-09 4.2e-08 24.6 0.1 2 116 11 134 10 134 0.67 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 178 TruB_N PF01509.13 149 1.1e-56 182.6 0.1 1 1 3.5e-58 1.2e-56 182.4 0.1 1 145 23 173 23 177 0.93 # 4223 # 4756 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.442 1_21 - 256 AAA_31 PF13614.1 157 1.4e-19 62.0 0.5 1 1 8.6e-21 3e-19 60.9 0.5 1 153 3 157 3 161 0.76 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 2_3 - 647 GTP_EFTU_D2 PF03144.20 74 1.7e-10 32.3 0.0 1 1 1.4e-11 5.1e-10 30.9 0.0 2 62 269 323 268 327 0.91 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 1_21 - 256 ParA PF10609.4 81 6.3e-05 14.3 1.1 1 1 3.7e-06 0.00013 13.3 1.1 2 60 124 180 123 196 0.88 # 15766 # 16533 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.279 2_3 - 647 GTP_EFTU PF00009.22 188 1.9e-60 194.9 0.5 1 1 7.9e-62 2.7e-60 194.4 0.5 2 186 7 243 6 245 0.92 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 2_3 - 647 EFG_IV PF03764.13 120 4.2e-25 79.1 0.0 1 1 3.3e-26 1.2e-24 77.7 0.0 1 119 421 536 421 537 0.98 # 1720 # 3660 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.333 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/47cf3297-d85d-45dc-bd71-431f742c595a # Target file: checkm_output/bins/pX92946.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pX92946.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/47cf3297-d85d-45dc-bd71-431f742c595a checkm_output/bins/pX92946.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:09 2020 # [ok]