# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 264 MipZ PF09140.6 261 6.4e-08 21.7 0.2 1 2 2.2e-07 2.5e-06 16.5 0.1 6 40 9 43 7 53 0.90 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 MipZ PF09140.6 261 6.4e-08 21.7 0.2 2 2 0.0026 0.029 3.2 0.0 76 129 102 154 76 191 0.73 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 YhjQ PF06564.7 244 7.2e-05 12.0 0.4 1 1 1.4e-05 0.00015 10.9 0.4 5 151 7 157 3 254 0.73 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 ArsA_ATPase PF02374.10 305 2.7e-06 16.3 0.1 1 1 4.1e-07 4.6e-06 15.6 0.1 7 47 10 50 5 59 0.90 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 VirC1 PF07015.6 231 2.3e-07 19.8 0.2 1 2 1.9e-05 0.00021 10.2 0.1 9 44 11 46 5 55 0.89 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 VirC1 PF07015.6 231 2.3e-07 19.8 0.2 2 2 0.00014 0.0016 7.3 0.0 82 190 122 232 111 251 0.76 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 Fer4_NifH PF00142.13 273 3.7e-09 25.9 0.0 1 2 0.00015 0.0016 7.4 0.0 7 43 11 47 5 58 0.87 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 Fer4_NifH PF00142.13 273 3.7e-09 25.9 0.0 2 2 2.2e-07 2.5e-06 16.6 0.0 170 244 177 253 146 259 0.83 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 CbiA PF01656.18 195 1.6e-35 112.0 0.0 1 1 1.8e-36 2e-35 111.8 0.0 2 195 7 226 6 226 0.82 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_3 - 264 AAA_31 PF13614.1 157 4.2e-11 32.8 0.1 1 1 1.6e-11 1.8e-10 30.8 0.1 9 156 12 161 7 162 0.77 # 1446 # 2237 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.707 1_5 - 452 AAA_25 PF13481.1 194 3.4e-27 84.8 1.1 1 2 0.074 0.82 -1.2 0.0 90 144 107 156 79 162 0.62 # 4062 # 5417 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.757 1_5 - 452 AAA_25 PF13481.1 194 3.4e-27 84.8 1.1 2 2 3.1e-28 3.4e-27 84.8 1.1 12 192 168 344 158 346 0.85 # 4062 # 5417 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.757 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/49c355d5-a2bb-48a9-ba23-3f7ce9020e0f # Target file: checkm_output/bins/pX54107.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pX54107.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/49c355d5-a2bb-48a9-ba23-3f7ce9020e0f checkm_output/bins/pX54107.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:05 2020 # [ok]