# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 679 DUF87 PF01935.12 229 4.3e-05 13.0 0.0 1 1 8.2e-06 8.2e-05 12.1 0.0 23 49 265 291 248 302 0.78 # 29 # 2065 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_1 - 679 FtsK_SpoIIIE PF01580.13 205 2.2e-11 33.2 0.0 1 1 5.1e-12 5.1e-11 32.0 0.0 31 204 258 423 231 424 0.77 # 29 # 2065 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_1 - 679 AAA_10 PF12846.2 304 2.1e-08 23.5 0.1 1 3 0.00033 0.0033 6.4 0.0 3 42 267 307 265 316 0.85 # 29 # 2065 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_1 - 679 AAA_10 PF12846.2 304 2.1e-08 23.5 0.1 2 3 1.7e-06 1.7e-05 13.9 0.0 222 291 381 447 323 456 0.79 # 29 # 2065 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_1 - 679 AAA_10 PF12846.2 304 2.1e-08 23.5 0.1 3 3 0.097 0.97 -1.7 0.0 37 56 497 516 481 631 0.57 # 29 # 2065 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 1_1 - 679 TrwB_AAD_bind PF10412.4 386 6.4e-05 11.3 0.2 1 1 1.6e-05 0.00016 9.9 0.0 16 47 266 297 261 307 0.91 # 29 # 2065 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.734 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/245ea518-a9ed-410f-9f08-253e42b38577 # Target file: checkm_output/bins/pU23762.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pU23762.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/245ea518-a9ed-410f-9f08-253e42b38577 checkm_output/bins/pU23762.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:52:01 2020 # [ok]