# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 270 UPF0020 PF01170.13 180 2e-09 26.6 0.0 1 2 0.0011 0.0084 5.0 0.0 91 117 25 52 13 60 0.69 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 UPF0020 PF01170.13 180 2e-09 26.6 0.0 2 2 4.5e-08 3.6e-07 19.2 0.0 23 83 214 263 211 268 0.92 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_18 PF12847.2 112 1.1e-06 18.6 0.0 1 2 0.006 0.048 3.7 0.0 55 110 24 106 14 108 0.61 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_18 PF12847.2 112 1.1e-06 18.6 0.0 2 2 1e-05 8.3e-05 12.6 0.0 10 46 228 262 219 267 0.86 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_11 PF08241.7 95 8.7e-05 12.4 0.0 1 2 0.088 0.7 -0.1 0.0 81 94 91 104 77 105 0.76 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_11 PF08241.7 95 8.7e-05 12.4 0.0 2 2 0.00035 0.0028 7.6 0.0 3 41 228 263 226 266 0.83 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 N6_N4_Mtase PF01555.13 231 1.6e-59 190.4 1.3 1 1 3.1e-60 2.5e-59 189.9 1.3 2 231 43 259 42 259 0.92 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 N6_Mtase PF02384.11 311 4.8e-06 15.1 0.0 1 2 2.6e-05 0.00021 9.7 0.0 109 179 25 103 17 117 0.77 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 N6_Mtase PF02384.11 311 4.8e-06 15.1 0.0 2 2 0.0024 0.019 3.3 0.0 19 63 191 236 179 256 0.71 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_26 PF13659.1 117 1.7e-14 43.3 0.0 1 2 7.1e-08 2.9e-07 20.0 0.0 50 113 21 105 7 107 0.74 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_26 PF13659.1 117 1.7e-14 43.3 0.0 2 2 3e-08 1.2e-07 21.2 0.0 4 45 223 263 220 267 0.93 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_2 - 285 Methyltransf_26 PF13659.1 117 5.5e-09 25.5 0.0 1 1 2.3e-09 9.1e-09 24.8 0.0 4 116 39 240 37 241 0.77 # 1272 # 2126 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.343 1_3 - 270 MTS PF05175.9 170 4.6e-06 15.4 0.0 1 2 3.3e-06 2.7e-05 12.9 0.0 82 143 25 110 5 129 0.82 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 MTS PF05175.9 170 4.6e-06 15.4 0.0 2 2 0.036 0.29 -0.2 0.0 31 76 219 262 208 266 0.77 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Cons_hypoth95 PF03602.10 183 3.4e-07 19.1 0.0 1 2 1e-05 4.2e-05 12.3 0.0 95 126 23 53 14 61 0.71 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Cons_hypoth95 PF03602.10 183 3.4e-07 19.1 0.0 2 2 0.0026 0.01 4.5 0.0 42 85 219 261 212 267 0.77 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_2 - 285 Cons_hypoth95 PF03602.10 183 2.6e-05 13.0 0.0 1 2 0.085 0.34 -0.4 0.0 44 65 37 58 27 105 0.64 # 1272 # 2126 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.343 1_2 - 285 Cons_hypoth95 PF03602.10 183 2.6e-05 13.0 0.0 2 2 3.4e-05 0.00014 10.6 0.0 93 124 170 197 150 219 0.70 # 1272 # 2126 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.343 1_3 - 270 Methyltransf_31 PF13847.1 152 5.6e-08 21.9 0.0 1 2 0.0013 0.01 4.7 0.0 55 109 22 106 17 171 0.68 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_31 PF13847.1 152 5.6e-08 21.9 0.0 2 2 9.7e-07 7.8e-06 14.9 0.0 2 49 218 262 217 266 0.87 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_2 - 285 MethyltransfD12 PF02086.10 260 1.5e-83 269.5 3.2 1 1 4.3e-84 1.7e-83 269.3 3.2 1 259 17 263 17 264 0.97 # 1272 # 2126 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.343 1_3 - 270 MethyltransfD12 PF02086.10 260 1.8e-07 20.1 0.3 1 3 0.00083 0.0033 6.2 0.0 162 189 26 53 15 63 0.80 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 MethyltransfD12 PF02086.10 260 1.8e-07 20.1 0.3 2 3 0.032 0.13 1.0 0.1 66 97 143 176 124 189 0.74 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 MethyltransfD12 PF02086.10 260 1.8e-07 20.1 0.3 3 3 9.7e-05 0.00039 9.2 0.0 20 61 219 260 207 266 0.83 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_15 PF09445.5 164 1e-08 24.2 0.0 1 2 7.5e-06 6e-05 12.0 0.0 47 80 19 51 13 82 0.83 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 1_3 - 270 Methyltransf_15 PF09445.5 164 1e-08 24.2 0.0 2 2 3.1e-05 0.00025 10.0 0.0 3 41 222 260 220 268 0.91 # 2116 # 2925 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=6bp;gc_cont=0.346 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/422b5a55-2f5f-43fa-bda4-048609da904a # Target file: checkm_output/bins/pU16027.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pU16027.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/422b5a55-2f5f-43fa-bda4-048609da904a checkm_output/bins/pU16027.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:58 2020 # [ok]