# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 330 Mg_chelatase PF01078.16 207 4.5e-05 14.4 0.0 1 2 0.05 2.2 -0.9 0.0 40 59 84 103 81 128 0.82 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 Mg_chelatase PF01078.16 207 4.5e-05 14.4 0.0 2 2 4.8e-06 0.00021 12.2 0.0 7 50 145 188 139 242 0.82 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_39 - 598 IstB_IS21 PF01695.12 178 1e-06 20.0 0.0 1 2 1.1e-06 4.6e-05 14.6 0.0 45 86 31 72 17 85 0.88 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_39 - 598 IstB_IS21 PF01695.12 178 1e-06 20.0 0.0 2 2 0.0098 0.43 1.7 0.1 97 138 109 158 102 166 0.64 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_8 - 220 MipZ PF09140.6 261 1.8e-15 48.4 2.2 1 2 2e-12 8.7e-11 33.1 1.1 2 141 3 130 2 158 0.73 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_8 - 220 MipZ PF09140.6 261 1.8e-15 48.4 2.2 2 2 0.00011 0.005 7.6 0.0 212 257 174 214 145 217 0.89 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 DUF87 PF01935.12 229 3.5e-05 15.4 0.9 1 2 0.083 3.7 -1.0 0.0 154 189 105 138 41 153 0.65 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 DUF87 PF01935.12 229 3.5e-05 15.4 0.9 2 2 1.7e-06 7.3e-05 14.4 0.2 24 45 161 182 138 193 0.83 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 Septin PF00735.13 281 1.7e-05 15.7 0.0 1 1 6.3e-07 2.8e-05 15.0 0.0 5 32 161 188 157 209 0.79 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_22 PF13401.1 131 7.4e-07 21.1 0.0 1 1 3.4e-08 1.5e-06 20.2 0.0 7 54 163 221 159 253 0.77 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 ATP_bind_1 PF03029.12 238 4.1e-05 14.9 0.1 1 1 6.8e-06 0.00015 13.1 0.0 6 34 12 40 10 49 0.92 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 ATP_bind_1 PF03029.12 238 7.2e-05 14.1 0.0 1 1 5.9e-06 0.00013 13.3 0.0 1 22 165 186 165 193 0.86 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_11 - 141 RRM_1 PF00076.17 70 5.2e-06 17.9 0.6 1 2 4.4e-07 1.9e-05 16.0 0.1 6 62 7 68 5 70 0.88 # 6292 # 6714 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_11 - 141 RRM_1 PF00076.17 70 5.2e-06 17.9 0.6 2 2 0.073 3.2 -0.7 0.0 5 18 105 118 104 133 0.75 # 6292 # 6714 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_22 - 330 PRK PF00485.13 194 0.00029 12.1 0.0 1 1 1.1e-05 0.00051 11.4 0.0 2 23 163 184 162 222 0.82 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 SRP54 PF00448.17 196 0.0002 12.6 0.0 1 1 8.4e-06 0.00037 11.7 0.0 11 72 12 71 9 99 0.73 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 AAA_17 PF13207.1 121 1.9e-05 17.2 0.2 1 1 4.1e-06 9.1e-05 15.1 0.1 2 43 163 200 162 225 0.72 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 AAA_17 PF13207.1 121 6.4e-05 15.6 0.2 1 1 7.1e-06 0.00016 14.3 0.2 9 78 12 108 11 206 0.69 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 AAA_21 PF13304.1 303 2.2e-05 16.2 3.6 1 3 0.077 3.4 -0.8 0.1 42 82 6 45 2 85 0.61 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_21 PF13304.1 303 2.2e-05 16.2 3.6 2 3 0.03 1.3 0.5 0.2 137 180 104 147 90 160 0.44 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_21 PF13304.1 303 2.2e-05 16.2 3.6 3 3 8.7e-07 3.8e-05 15.4 0.0 3 59 164 201 162 282 0.73 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 Miro PF08477.8 119 2.4e-05 16.6 0.1 1 1 1.5e-06 6.5e-05 15.2 0.1 2 21 163 182 162 294 0.84 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 MobB PF03205.9 140 2.5e-05 15.7 0.0 1 1 1.1e-06 4.8e-05 14.8 0.0 3 24 163 184 161 198 0.85 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 ArsA_ATPase PF02374.10 305 1.9e-07 22.1 0.3 1 2 2.2e-08 9.7e-07 19.8 0.0 8 48 9 49 1 72 0.85 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_8 - 220 ArsA_ATPase PF02374.10 305 1.9e-07 22.1 0.3 2 2 0.03 1.3 -0.4 0.2 142 202 118 161 114 186 0.48 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 T2SE PF00437.15 272 2.1e-63 205.4 0.0 1 1 6.1e-65 2.7e-63 205.1 0.0 7 268 15 311 10 315 0.94 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 SMC_N PF02463.14 220 0.00017 12.6 0.1 1 1 7.4e-06 0.00033 11.7 0.1 7 44 146 180 137 207 0.77 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 VirC1 PF07015.6 231 2.8e-06 18.3 0.1 1 2 9.7e-05 0.0043 7.8 0.0 1 40 1 40 1 58 0.86 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_8 - 220 VirC1 PF07015.6 231 2.8e-06 18.3 0.1 2 2 4.8e-05 0.0021 8.8 0.0 87 152 83 149 67 214 0.75 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 AAA_16 PF13191.1 185 8.9e-05 14.3 0.0 1 1 3e-06 0.00013 13.7 0.0 23 63 159 204 148 314 0.76 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_23 PF13476.1 202 1.8e-06 20.1 1.3 1 2 0.076 3.3 -0.3 1.0 97 136 117 138 28 152 0.49 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_23 PF13476.1 202 1.8e-06 20.1 1.3 2 2 4e-08 1.8e-06 20.1 1.3 5 38 147 179 141 181 0.87 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_18 PF13238.1 129 5.3e-05 15.3 0.1 1 1 3.7e-06 0.00016 13.7 0.0 1 18 163 180 163 238 0.78 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 CbiA PF01656.18 195 4.1e-12 37.6 0.1 1 1 3.1e-13 6.9e-12 36.9 0.1 5 189 8 176 4 182 0.72 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_39 - 598 CbiA PF01656.18 195 0.00022 12.4 0.5 1 1 0.00016 0.0036 8.4 0.5 1 29 35 63 35 131 0.80 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_39 - 598 KaiC PF06745.8 227 1.6e-05 15.8 0.1 1 1 1.3e-06 5.7e-05 14.0 0.0 16 79 30 91 24 214 0.73 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_22 - 330 AAA_14 PF13173.1 128 6.6e-05 14.6 0.0 1 1 7.4e-06 0.00016 13.3 0.0 3 55 161 212 160 278 0.76 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 AAA_14 PF13173.1 128 9.5e-05 14.1 1.0 1 1 4.3e-06 9.5e-05 14.1 1.0 13 68 13 86 11 108 0.62 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 GvpD PF07088.6 484 0.00023 11.2 0.0 1 1 6.5e-06 0.00029 10.9 0.0 8 40 158 190 150 257 0.84 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 AAA_29 PF13555.1 62 1.1e-05 16.7 0.0 1 1 6.5e-07 2.9e-05 15.4 0.0 12 41 152 178 139 184 0.74 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_39 - 598 AAA PF00004.24 132 0.00021 13.3 0.1 1 2 6.2e-05 0.0027 9.7 0.0 2 105 37 166 36 178 0.65 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_39 - 598 AAA PF00004.24 132 0.00021 13.3 0.1 2 2 0.061 2.7 -0.0 0.0 54 74 416 434 380 456 0.78 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_22 - 330 Sigma54_activat PF00158.21 168 0.00022 12.5 0.0 1 1 1.2e-05 0.00054 11.2 0.0 12 43 150 181 142 200 0.81 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 DUF258 PF03193.11 161 0.00032 11.7 0.0 1 1 9.4e-06 0.00041 11.3 0.0 22 57 146 182 125 262 0.83 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_19 - 607 TraG-D_C PF12696.2 128 4.2e-30 96.0 0.0 1 1 2e-31 8.8e-30 95.0 0.0 2 127 414 535 413 536 0.87 # 13060 # 14880 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_8 - 220 AAA_31 PF13614.1 157 7.8e-09 27.4 0.9 1 3 2.5e-06 0.00011 13.9 0.0 2 42 3 43 2 50 0.90 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_8 - 220 AAA_31 PF13614.1 157 7.8e-09 27.4 0.9 2 3 0.00015 0.0064 8.2 0.1 106 153 66 114 58 118 0.80 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_8 - 220 AAA_31 PF13614.1 157 7.8e-09 27.4 0.9 3 3 0.012 0.53 1.9 0.1 106 134 139 170 125 178 0.78 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 AAA_33 PF13671.1 143 0.00028 12.5 0.0 1 1 1e-05 0.00044 11.9 0.0 2 20 163 181 163 261 0.85 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_39 - 598 DnaB_C PF03796.10 259 7e-06 16.8 0.0 1 2 6.2e-07 2.7e-05 14.8 0.0 13 112 27 131 19 157 0.79 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_39 - 598 DnaB_C PF03796.10 259 7e-06 16.8 0.0 2 2 0.0087 0.38 1.2 0.0 124 185 115 177 98 180 0.71 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 1_11 - 141 RRM_6 PF14259.1 70 0.00033 12.4 0.1 1 1 2.1e-05 0.0009 11.0 0.0 6 60 7 66 5 71 0.84 # 6292 # 6714 # -1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_22 - 330 FtsK_SpoIIIE PF01580.13 205 1.9e-07 22.5 0.0 1 1 9.1e-09 4e-07 21.4 0.0 30 59 148 181 127 183 0.79 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 Dynamin_N PF00350.18 168 0.00014 13.5 0.0 1 2 0.038 1.7 0.2 0.0 31 107 94 115 22 155 0.60 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 Dynamin_N PF00350.18 168 0.00014 13.5 0.0 2 2 2.1e-05 0.00093 10.8 0.0 1 32 163 192 163 220 0.88 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 ABC_tran PF00005.22 137 3.1e-07 22.5 0.0 1 1 1.6e-08 7.1e-07 21.4 0.0 8 51 157 201 150 229 0.84 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_33 - 924 AAA_10 PF12846.2 304 1.7e-34 111.3 0.2 1 1 2e-35 3e-34 110.5 0.2 2 299 546 841 545 845 0.81 # 22897 # 25668 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.309 1_22 - 330 AAA_10 PF12846.2 304 6e-06 17.6 0.0 1 1 5.9e-07 8.6e-06 17.0 0.0 2 23 161 182 160 221 0.88 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_19 - 607 AAA_10 PF12846.2 304 3.2e-05 15.2 0.0 1 1 4.8e-06 7.1e-05 14.0 0.0 34 301 162 497 137 500 0.66 # 13060 # 14880 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 330 ResIII PF04851.10 184 4.7e-05 15.0 0.2 1 1 2.2e-06 9.9e-05 14.0 0.1 5 47 142 182 137 226 0.82 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 DEAD PF00270.24 169 4.7e-05 14.7 0.0 1 1 1.8e-06 7.9e-05 13.9 0.0 13 36 159 181 144 243 0.69 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 DUF815 PF05673.8 250 6.6e-05 13.6 0.0 1 1 2.3e-06 0.0001 13.0 0.0 10 75 115 182 107 208 0.79 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_19 - 607 TrwB_AAD_bind PF10412.4 386 2.3e-22 70.8 0.0 1 2 1.4e-06 3.2e-05 14.4 0.0 44 122 158 248 131 271 0.74 # 13060 # 14880 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_19 - 607 TrwB_AAD_bind PF10412.4 386 2.3e-22 70.8 0.0 2 2 9.8e-19 2.1e-17 54.4 0.0 165 379 329 548 307 551 0.82 # 13060 # 14880 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 330 TrwB_AAD_bind PF10412.4 386 7.3e-05 13.2 0.0 1 1 5.4e-06 0.00012 12.5 0.0 16 40 161 185 154 213 0.86 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_19 - 607 T4SS-DNA_transf PF02534.9 469 2.8e-112 367.3 0.1 1 1 8.6e-114 3.8e-112 366.9 0.1 2 461 93 572 82 578 0.86 # 13060 # 14880 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_22 - 330 Pox_A32 PF04665.7 241 1.9e-05 15.8 0.2 1 1 8.5e-07 3.7e-05 14.8 0.1 15 36 162 183 148 213 0.86 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 RNA_helicase PF00910.17 107 3e-05 16.0 0.0 1 1 2.4e-06 0.0001 14.2 0.0 1 21 163 183 163 223 0.85 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_22 - 330 UPF0079 PF02367.12 123 3.9e-06 18.3 0.0 1 1 1.6e-07 6.8e-06 17.5 0.0 6 45 151 190 146 206 0.87 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_8 - 220 AAA_24 PF13479.1 213 0.00016 13.1 0.1 1 1 9.1e-06 0.0004 11.7 0.1 12 77 11 88 9 92 0.75 # 4521 # 5180 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.267 1_22 - 330 NACHT PF05729.7 166 3e-05 15.5 0.0 1 1 1.2e-06 5.3e-05 14.7 0.0 3 22 163 182 161 185 0.91 # 15881 # 16870 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.327 1_39 - 598 AAA_25 PF13481.1 194 1.2e-22 71.9 0.0 1 1 5.1e-24 2.2e-22 71.1 0.0 30 193 30 175 26 176 0.90 # 27967 # 29760 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d00dfffa-5a36-4011-8695-68ac749fbc88 # Target file: checkm_output/bins/pNZ_CP020480.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP020480.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d00dfffa-5a36-4011-8695-68ac749fbc88 checkm_output/bins/pNZ_CP020480.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:53 2020 # [ok]