# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 315 Mg_chelatase PF01078.16 207 1.9e-05 15.1 0.1 1 1 1.5e-06 4.7e-05 13.8 0.0 9 55 130 176 125 205 0.84 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 cobW PF02492.14 178 0.0001 13.0 0.1 1 1 1.1e-05 0.00016 12.4 0.1 4 35 147 181 144 211 0.73 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 cobW PF02492.14 178 0.00027 11.7 0.8 1 1 0.00024 0.0038 7.9 0.8 10 173 11 168 2 173 0.56 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 Thymidylate_kin PF02223.12 186 3.9e-06 17.6 0.4 1 2 8.9e-06 0.00027 11.6 0.0 6 42 11 49 10 53 0.77 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 Thymidylate_kin PF02223.12 186 3.9e-06 17.6 0.4 2 2 0.0021 0.064 3.8 0.3 139 166 193 222 157 227 0.74 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 IstB_IS21 PF01695.12 178 1.4e-05 15.8 0.0 1 1 6.3e-07 2e-05 15.3 0.0 43 67 139 163 110 207 0.77 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 MipZ PF09140.6 261 1.1e-16 51.9 0.9 1 3 3.5e-10 5.5e-09 26.7 0.0 2 48 2 47 1 56 0.85 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 MipZ PF09140.6 261 1.1e-16 51.9 0.9 2 3 6.4e-09 9.9e-08 22.5 0.1 83 141 64 122 49 133 0.87 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 MipZ PF09140.6 261 1.1e-16 51.9 0.9 3 3 0.059 0.92 -0.3 0.0 127 169 131 173 125 193 0.76 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_23 - 236 MipZ PF09140.6 261 3.8e-05 14.1 0.0 1 1 3.9e-06 6.1e-05 13.4 0.0 5 46 7 48 3 83 0.90 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_28 - 229 YhjQ PF06564.7 244 6.3e-05 13.6 0.0 1 1 4.9e-06 0.00015 12.4 0.0 10 41 9 40 1 53 0.90 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_19 - 120 SSB PF00436.20 104 1.8e-24 76.9 0.2 1 1 7e-26 2.2e-24 76.7 0.2 2 103 3 98 2 99 0.97 # 14876 # 15235 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.283 1_14 - 228 DNA_pack_N PF02500.10 284 0.0001 13.1 0.5 1 1 5.7e-06 0.00018 12.3 0.5 202 263 38 100 35 106 0.75 # 10899 # 11582 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.292 1_5 - 315 DUF87 PF01935.12 229 2e-06 19.0 0.1 1 1 3.8e-07 5.9e-06 17.4 0.1 25 58 145 179 136 184 0.90 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 DUF87 PF01935.12 229 3.8e-05 14.8 1.2 1 1 1.2e-05 0.00019 12.5 0.0 24 59 455 490 436 491 0.77 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 Septin PF00735.13 281 0.00014 12.2 1.3 1 2 0.08 2.5 -1.8 0.2 171 199 109 137 106 140 0.76 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 Septin PF00735.13 281 0.00014 12.2 1.3 2 2 6.3e-06 0.00019 11.7 0.1 6 27 145 166 141 205 0.73 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 AAA_22 PF13401.1 131 6.4e-09 27.3 0.0 1 2 1.3e-06 1.3e-05 16.6 0.0 5 37 455 492 451 634 0.83 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 820 AAA_22 PF13401.1 131 6.4e-09 27.3 0.0 2 2 0.002 0.02 6.3 0.0 75 122 636 686 616 691 0.78 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 229 AAA_22 PF13401.1 131 5.5e-05 14.6 0.1 1 1 1.8e-05 0.00019 12.9 0.0 14 88 11 78 5 107 0.77 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 AAA_22 PF13401.1 131 0.00011 13.6 0.0 1 1 2.2e-05 0.00023 12.6 0.0 3 28 142 167 138 220 0.74 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 ATP_bind_1 PF03029.12 238 1.1e-05 16.3 0.0 1 1 6.1e-07 1.9e-05 15.5 0.0 1 21 148 168 148 183 0.87 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 SRP54 PF00448.17 196 2.3e-09 28.2 0.1 1 2 2.8e-10 8.6e-09 26.3 0.0 11 98 11 94 8 141 0.84 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 SRP54 PF00448.17 196 2.3e-09 28.2 0.1 2 2 0.084 2.6 -1.4 0.0 98 114 148 164 107 195 0.69 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 AAA_17 PF13207.1 121 2.7e-06 19.5 0.0 1 1 6.4e-07 6.6e-06 18.2 0.0 2 37 146 180 145 241 0.77 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_23 - 236 AAA_17 PF13207.1 121 3.9e-06 19.0 0.4 1 1 1.4e-06 1.5e-05 17.1 0.4 4 99 8 123 6 229 0.74 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_28 - 229 AAA_17 PF13207.1 121 5.6e-05 15.2 0.8 1 1 2.9e-05 0.0003 12.9 0.8 9 24 11 29 10 225 0.83 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 Miro PF08477.8 119 7.6e-05 14.5 0.1 1 1 1.6e-05 0.0005 11.9 0.0 2 25 146 169 145 213 0.73 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 MobB PF03205.9 140 3.1e-05 15.0 0.0 1 1 2e-06 6.1e-05 14.0 0.0 3 22 146 165 144 184 0.88 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 ArsA_ATPase PF02374.10 305 6.8e-12 36.2 0.2 1 1 1e-12 1.6e-11 35.0 0.0 6 109 6 110 1 130 0.82 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_23 - 236 ArsA_ATPase PF02374.10 305 2.9e-05 14.4 0.1 1 1 4.1e-06 6.4e-05 13.3 0.0 4 41 6 43 3 62 0.89 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_5 - 315 T2SE PF00437.15 272 5.8e-82 265.8 0.0 1 1 2.3e-83 7.2e-82 265.5 0.0 7 269 23 285 18 288 0.98 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 Zeta_toxin PF06414.7 201 2.9e-06 17.7 0.0 1 1 3.9e-07 6.1e-06 16.7 0.0 14 52 141 182 126 209 0.85 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 Zeta_toxin PF06414.7 201 6.2e-05 13.4 0.2 1 2 1.9e-05 0.0003 11.1 0.0 25 56 10 43 5 102 0.68 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 Zeta_toxin PF06414.7 201 6.2e-05 13.4 0.2 2 2 0.084 1.3 -0.7 0.0 154 193 144 179 134 189 0.80 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 VirC1 PF07015.6 231 1.7e-11 34.8 0.1 1 1 1.4e-12 4.2e-11 33.5 0.1 4 151 3 146 1 191 0.77 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 Fer4_NifH PF00142.13 273 8.1e-07 19.7 0.0 1 1 1.1e-07 1.6e-06 18.7 0.0 5 61 6 61 2 93 0.77 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_23 - 236 Fer4_NifH PF00142.13 273 5.1e-06 17.0 0.0 1 1 4.6e-07 7.2e-06 16.5 0.0 5 75 8 76 4 116 0.83 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_8 - 820 Arch_ATPase PF01637.13 234 4e-05 14.6 4.5 1 1 1.6e-06 5e-05 14.3 0.0 23 60 457 494 455 691 0.88 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 AAA_16 PF13191.1 185 0.0002 12.6 0.2 1 1 1.9e-05 0.00058 11.1 0.1 23 46 142 165 132 180 0.86 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 AAA_23 PF13476.1 202 2.2e-05 16.1 4.4 1 2 0.0082 0.13 3.8 0.2 101 176 10 138 2 146 0.55 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 AAA_23 PF13476.1 202 2.2e-05 16.1 4.4 2 2 1.2e-05 0.00018 13.1 1.2 22 39 146 163 142 200 0.88 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 AAA_23 PF13476.1 202 0.0015 10.1 18.1 1 1 7.9e-06 0.00012 13.7 1.2 20 41 455 476 445 642 0.90 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 229 AAA_18 PF13238.1 129 1.3e-06 20.1 0.3 1 1 3.8e-07 5.9e-06 17.9 0.1 8 85 11 114 9 170 0.74 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 AAA_18 PF13238.1 129 0.00011 13.8 2.8 1 1 1.1e-05 0.00017 13.2 0.7 1 28 146 180 146 203 0.73 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 CbiA PF01656.18 195 7.6e-27 85.2 0.7 1 1 1.9e-27 2e-26 83.8 0.7 1 165 3 151 3 193 0.74 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_23 - 236 CbiA PF01656.18 195 4.5e-09 27.2 0.4 1 1 6.9e-10 7.2e-09 26.5 0.3 2 49 6 58 5 148 0.59 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_8 - 820 CbiA PF01656.18 195 3.4e-05 14.5 0.0 1 1 9.3e-06 9.6e-05 13.1 0.0 8 63 463 547 457 596 0.64 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 IIGP PF05049.8 376 0.00011 12.3 0.3 1 1 6e-06 0.00019 11.5 0.3 25 55 133 163 114 165 0.83 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 KaiC PF06745.8 227 1.4e-05 15.6 0.0 1 1 8.7e-07 2.7e-05 14.6 0.0 11 38 135 162 130 187 0.85 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 AAA_14 PF13173.1 128 0.0001 13.5 3.7 1 2 0.00013 0.0039 8.4 0.0 5 41 457 493 455 513 0.85 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 820 AAA_14 PF13173.1 128 0.0001 13.5 3.7 2 2 0.002 0.063 4.5 0.0 29 103 610 695 598 708 0.64 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 AAA_29 PF13555.1 62 2.3e-06 18.4 0.0 1 1 3e-07 4.6e-06 17.4 0.0 21 44 142 164 132 177 0.81 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 AAA_29 PF13555.1 62 2.4e-05 15.1 0.0 1 1 5.1e-06 7.9e-05 13.5 0.0 23 42 455 473 445 489 0.83 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 820 AAA PF00004.24 132 9e-05 14.0 1.2 1 2 0.0016 0.05 5.1 0.0 33 74 289 331 261 340 0.70 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 820 AAA PF00004.24 132 9e-05 14.0 1.2 2 2 0.0022 0.067 4.7 0.0 2 22 458 478 457 515 0.81 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 Sigma54_activat PF00158.21 168 8.5e-06 16.6 0.0 1 1 4.6e-07 1.4e-05 15.8 0.0 9 48 130 169 123 198 0.79 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 DUF258 PF03193.11 161 0.0002 11.8 0.0 1 1 9.5e-06 0.00029 11.3 0.0 22 59 129 167 110 226 0.77 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_22 - 609 TraG-D_C PF12696.2 128 3.8e-31 98.9 0.5 1 1 2.2e-32 6.9e-31 98.1 0.1 2 127 432 552 431 553 0.90 # 17569 # 19395 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_28 - 229 AAA_31 PF13614.1 157 3.3e-14 44.4 0.1 1 3 9.4e-11 1.5e-09 29.3 0.0 2 48 2 48 1 71 0.85 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 AAA_31 PF13614.1 157 3.3e-14 44.4 0.1 2 3 0.00014 0.0022 9.2 0.0 111 151 73 112 67 117 0.80 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 AAA_31 PF13614.1 157 3.3e-14 44.4 0.1 3 3 0.015 0.23 2.6 0.0 50 81 153 183 133 216 0.77 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_23 - 236 AAA_31 PF13614.1 157 7.3e-05 14.0 0.1 1 2 4.3e-05 0.00066 10.9 0.0 5 80 7 76 3 112 0.71 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_23 - 236 AAA_31 PF13614.1 157 7.3e-05 14.0 0.1 2 2 0.052 0.8 0.9 0.0 30 63 176 210 166 226 0.75 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_5 - 315 AAA_33 PF13671.1 143 2.3e-05 15.5 0.1 1 1 3.9e-06 6.1e-05 14.2 0.1 2 33 146 175 146 236 0.76 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 AAA_33 PF13671.1 143 6.1e-05 14.2 0.0 1 1 1.1e-05 0.00018 12.7 0.0 9 87 11 97 9 101 0.74 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 AAA_30 PF13604.1 196 5.4e-07 20.6 0.0 1 1 2.8e-08 8.5e-07 19.9 0.0 2 44 128 169 127 237 0.88 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 FtsK_SpoIIIE PF01580.13 205 8.6e-09 26.4 0.0 1 1 8.5e-10 1.3e-08 25.7 0.0 39 77 139 181 119 214 0.76 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 FtsK_SpoIIIE PF01580.13 205 2e-05 15.3 0.0 1 1 3.2e-06 5e-05 14.1 0.0 35 64 449 480 415 498 0.76 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 820 ABC_tran PF00005.22 137 7.4e-06 17.6 0.9 1 1 3.2e-06 5e-05 14.9 0.0 12 42 455 486 446 596 0.68 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 ABC_tran PF00005.22 137 1.6e-05 16.5 0.1 1 1 1.6e-06 2.5e-05 15.8 0.1 8 45 140 180 133 261 0.77 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 AAA_19 PF13245.1 76 1.7e-06 19.0 0.1 1 1 1.8e-07 2.8e-06 18.3 0.1 2 48 135 179 134 247 0.86 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 AAA_19 PF13245.1 76 1.2e-05 16.3 0.0 1 1 1.7e-06 2.7e-05 15.2 0.0 20 47 11 34 4 48 0.84 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_8 - 820 AAA_10 PF12846.2 304 1.3e-36 117.8 0.1 1 1 9.8e-37 6e-36 115.6 0.0 2 286 455 713 454 717 0.89 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_22 - 609 AAA_10 PF12846.2 304 5.5e-08 23.8 0.0 1 1 2.1e-08 1.3e-07 22.5 0.0 3 302 152 510 150 512 0.68 # 17569 # 19395 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 315 AAA_10 PF12846.2 304 3.1e-07 21.3 0.0 1 1 8.4e-08 5.2e-07 20.6 0.0 2 37 144 182 143 230 0.90 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 AAA_10 PF12846.2 304 2.9e-05 14.8 0.1 1 1 1e-05 6.2e-05 13.7 0.1 11 140 11 167 9 226 0.57 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_23 - 236 AAA_10 PF12846.2 304 0.00012 12.8 0.2 1 1 6.5e-05 0.0004 11.1 0.1 3 44 5 46 3 72 0.81 # 19407 # 20114 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_5 - 315 ResIII PF04851.10 184 1.5e-06 19.4 0.0 1 1 8.3e-08 2.6e-06 18.6 0.0 14 62 131 185 116 205 0.76 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 Zot PF05707.7 193 3.3e-05 14.6 0.1 1 2 0.074 2.3 -1.2 0.0 50 77 269 297 255 306 0.69 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_8 - 820 Zot PF05707.7 193 3.3e-05 14.6 0.1 2 2 8.7e-06 0.00027 11.7 0.0 79 127 647 691 596 695 0.74 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 DEAD PF00270.24 169 2.1e-07 21.8 0.1 1 1 1.7e-08 5.1e-07 20.6 0.0 3 60 131 189 129 232 0.80 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 DUF815 PF05673.8 250 0.00021 11.5 0.0 1 1 1e-05 0.00032 10.9 0.0 30 80 119 170 103 199 0.77 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_22 - 609 TrwB_AAD_bind PF10412.4 386 4.9e-25 79.1 0.0 1 1 8.8e-26 1.4e-24 77.6 0.0 122 368 295 554 141 558 0.85 # 17569 # 19395 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 315 TrwB_AAD_bind PF10412.4 386 1.8e-06 18.0 0.1 1 1 1.8e-07 2.7e-06 17.4 0.1 14 53 142 183 134 225 0.86 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_22 - 609 T4SS-DNA_transf PF02534.9 469 4.7e-100 326.5 0.1 1 1 2.1e-101 6.4e-100 326.1 0.1 6 459 106 598 101 607 0.86 # 17569 # 19395 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.314 1_5 - 315 Pox_A32 PF04665.7 241 7.7e-05 13.3 0.6 1 2 1.1e-05 0.00034 11.2 0.1 14 37 144 167 132 171 0.84 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 Pox_A32 PF04665.7 241 7.7e-05 13.3 0.6 2 2 0.016 0.5 0.8 0.1 188 220 170 204 162 213 0.75 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 RNA_helicase PF00910.17 107 0.00018 13.0 0.0 1 1 1.8e-05 0.00054 11.4 0.0 1 23 146 168 146 195 0.81 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 UPF0079 PF02367.12 123 0.00013 12.9 0.1 1 1 1.1e-05 0.00033 11.6 0.0 14 40 142 168 130 177 0.82 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 AAA_24 PF13479.1 213 1.2e-05 16.1 0.1 1 1 8.4e-07 2.6e-05 15.1 0.1 11 79 9 90 2 103 0.69 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_5 - 315 UvrD-helicase PF00580.16 315 4.5e-05 14.0 0.0 1 1 2.4e-06 7.4e-05 13.3 0.0 4 28 131 158 128 179 0.78 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_5 - 315 NACHT PF05729.7 166 3.3e-05 14.9 0.0 1 1 6.6e-06 0.0001 13.2 0.0 3 31 146 174 144 208 0.81 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_8 - 820 NACHT PF05729.7 166 0.00028 11.8 0.0 1 1 0.00012 0.0018 9.2 0.0 4 31 458 485 456 490 0.83 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 229 AAA_25 PF13481.1 194 9.2e-07 19.7 0.2 1 3 4.8e-06 5e-05 14.0 0.0 42 66 10 36 3 47 0.77 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 AAA_25 PF13481.1 194 9.2e-07 19.7 0.2 2 3 0.083 0.86 0.2 0.0 101 150 42 87 33 90 0.69 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 229 AAA_25 PF13481.1 194 9.2e-07 19.7 0.2 3 3 0.018 0.19 2.3 0.0 89 177 135 223 127 225 0.67 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_8 - 820 AAA_25 PF13481.1 194 5.5e-06 17.1 0.1 1 1 4.1e-06 4.2e-05 14.2 0.0 33 58 455 479 427 523 0.78 # 4377 # 6836 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_5 - 315 AAA_25 PF13481.1 194 7.5e-05 13.4 0.0 1 1 1e-05 0.0001 12.9 0.0 21 58 131 168 110 240 0.79 # 2828 # 3772 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 229 APS_kinase PF01583.15 157 4.1e-05 14.5 0.0 1 1 3.8e-06 0.00012 13.0 0.0 11 42 10 41 3 53 0.90 # 22117 # 22803 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e39e3d0f-8303-4b3a-9df7-0b5ec5ff6319 # Target file: checkm_output/bins/pNZ_CP018794.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP018794.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e39e3d0f-8303-4b3a-9df7-0b5ec5ff6319 checkm_output/bins/pNZ_CP018794.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:49 2020 # [ok]