# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 419 RrnaAD PF00398.15 262 1.1e-05 16.7 0.1 1 3 3.4e-05 0.002 9.3 0.0 33 81 2 56 1 70 0.83 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_16 - 419 RrnaAD PF00398.15 262 1.1e-05 16.7 0.1 2 3 0.0014 0.083 4.0 0.0 195 251 84 140 77 150 0.78 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_16 - 419 RrnaAD PF00398.15 262 1.1e-05 16.7 0.1 3 3 0.081 4.9 -1.8 0.0 70 93 282 307 262 344 0.62 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_15 - 598 IstB_IS21 PF01695.12 178 1.4e-06 20.0 0.0 1 2 1.5e-06 8.7e-05 14.2 0.0 46 85 32 71 25 84 0.89 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 1_15 - 598 IstB_IS21 PF01695.12 178 1.4e-06 20.0 0.0 2 2 0.005 0.3 2.6 0.1 96 139 108 159 98 182 0.71 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 1_45 - 640 AIG1 PF04548.11 212 0.00016 13.0 0.0 1 1 6.6e-06 0.0004 11.7 0.0 32 62 51 81 43 108 0.84 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_26 - 142 SSB PF00436.20 104 2.5e-28 90.2 0.1 1 1 5.4e-30 3.2e-28 89.9 0.1 1 102 1 102 1 104 0.98 # 21385 # 21810 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_34 - 336 DUF87 PF01935.12 229 5.6e-05 15.2 0.0 1 1 3.5e-06 0.0001 14.3 0.0 27 48 164 185 142 193 0.84 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 923 DUF87 PF01935.12 229 0.001 11.0 7.1 1 2 0.00015 0.0044 9.0 0.0 26 49 548 571 539 582 0.84 # 17458 # 20226 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291 1_23 - 923 DUF87 PF01935.12 229 0.001 11.0 7.1 2 2 0.011 0.34 2.8 0.1 101 165 639 700 633 732 0.74 # 17458 # 20226 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291 1_34 - 336 Septin PF00735.13 281 4.5e-05 14.7 0.0 1 1 2.4e-06 7.2e-05 14.0 0.0 6 29 162 185 158 209 0.80 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_45 - 640 Septin PF00735.13 281 0.00016 12.9 0.1 1 1 9.7e-06 0.00029 12.0 0.1 7 77 6 82 3 91 0.68 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 336 AAA_22 PF13401.1 131 1.1e-05 17.8 0.0 1 1 7.8e-07 2.3e-05 16.7 0.0 4 41 160 208 156 259 0.71 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 AAA_22 PF13401.1 131 1.3e-05 17.6 1.4 1 1 1.3e-05 0.00039 12.8 1.4 5 114 25 204 20 219 0.59 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_34 - 336 ATP_bind_1 PF03029.12 238 0.00014 13.6 0.0 1 1 3.8e-06 0.00023 12.9 0.0 1 23 165 187 165 193 0.87 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_16 - 419 DNA_methylase PF00145.12 335 1.1e-65 214.0 9.5 1 2 4.5e-10 2.7e-08 25.4 0.1 3 44 3 46 1 66 0.86 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_16 - 419 DNA_methylase PF00145.12 335 1.1e-65 214.0 9.5 2 2 3.9e-60 2.4e-58 190.0 6.3 39 334 88 414 71 415 0.77 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_10 - 274 AAA_15 PF13175.1 415 2.7e-15 48.4 25.0 1 2 0.00075 0.045 4.9 2.7 16 38 18 40 2 58 0.80 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_10 - 274 AAA_15 PF13175.1 415 2.7e-15 48.4 25.0 2 2 6.6e-17 4e-15 47.9 16.1 253 411 75 215 46 219 0.80 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_34 - 336 AAA_17 PF13207.1 121 5.3e-06 19.5 0.1 1 1 4.6e-07 1.4e-05 18.1 0.1 2 49 163 207 162 302 0.82 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 AAA_17 PF13207.1 121 8.3e-05 15.6 0.4 1 1 7.2e-06 0.00021 14.3 0.4 2 61 27 97 26 237 0.70 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_10 - 274 AAA_21 PF13304.1 303 6.5e-20 64.4 12.2 1 1 1.3e-18 8e-17 54.2 7.8 142 301 64 218 44 220 0.69 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_45 - 640 Miro PF08477.8 119 1.2e-05 18.0 0.0 1 1 4.4e-07 2.6e-05 16.9 0.0 9 119 13 131 5 131 0.75 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 336 MobB PF03205.9 140 2.5e-05 16.2 0.4 1 2 2.3e-06 0.00014 13.8 0.0 3 27 163 187 161 199 0.81 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 MobB PF03205.9 140 2.5e-05 16.2 0.4 2 2 0.065 3.9 -0.6 0.1 20 44 296 320 293 322 0.81 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 2_6 - 1933 Helicase_C PF00271.26 78 1.5e-07 23.5 0.3 1 2 0.055 3.3 -0.1 0.0 14 40 1079 1105 1065 1107 0.84 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 2_6 - 1933 Helicase_C PF00271.26 78 1.5e-07 23.5 0.3 2 2 4.2e-08 2.5e-06 19.5 0.0 12 78 1516 1584 1509 1584 0.86 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_34 - 336 T2SE PF00437.15 272 6.6e-64 207.5 0.0 1 1 1.3e-65 7.6e-64 207.3 0.0 6 269 14 312 9 315 0.95 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 Zeta_toxin PF06414.7 201 7.8e-05 14.0 0.0 1 1 2.1e-06 0.00013 13.3 0.0 17 49 161 194 147 218 0.85 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 SMC_N PF02463.14 220 1.3e-08 26.5 6.7 1 1 1.3e-09 7.7e-08 24.0 6.7 14 203 14 220 4 233 0.64 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_34 - 336 AAA_16 PF13191.1 185 3.1e-05 16.2 0.0 1 1 1.4e-06 4.3e-05 15.7 0.0 24 81 160 234 148 306 0.76 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 AAA_16 PF13191.1 185 0.00038 12.7 0.0 1 1 2.6e-05 0.00077 11.6 0.0 23 81 23 104 16 210 0.64 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_10 - 274 AAA_23 PF13476.1 202 0.00044 12.8 0.3 1 1 1.5e-05 0.00044 12.8 0.3 11 33 16 38 6 40 0.88 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_34 - 336 AAA_23 PF13476.1 202 0.00079 12.0 4.4 1 1 1.6e-05 0.00049 12.6 1.6 22 37 163 178 152 184 0.89 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 AAA_18 PF13238.1 129 0.0001 14.8 0.4 1 1 1e-05 0.0003 13.3 0.0 1 18 163 180 163 227 0.76 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 AAA_18 PF13238.1 129 0.00062 12.3 3.6 1 1 0.00026 0.0079 8.7 3.6 1 69 27 107 27 243 0.76 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 2_8 - 187 CbiA PF01656.18 195 2.2e-08 25.9 0.1 1 2 6.4e-07 3.9e-05 15.3 0.0 1 24 3 26 3 32 0.92 # 10320 # 10880 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 2_8 - 187 CbiA PF01656.18 195 2.2e-08 25.9 0.1 2 2 5.1e-05 0.0031 9.1 0.0 95 178 54 131 29 151 0.68 # 10320 # 10880 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_15 - 598 KaiC PF06745.8 227 2.2e-05 15.8 0.1 1 2 1.8e-06 0.00011 13.5 0.0 16 71 30 84 23 214 0.73 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 1_15 - 598 KaiC PF06745.8 227 2.2e-05 15.8 0.1 2 2 0.081 4.8 -1.7 0.0 133 156 329 352 321 358 0.83 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 1_10 - 274 AAA_14 PF13173.1 128 2.9e-05 16.2 2.8 1 2 0.00038 0.011 7.8 0.0 2 28 24 55 23 112 0.72 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_10 - 274 AAA_14 PF13173.1 128 2.9e-05 16.2 2.8 2 2 0.00028 0.0085 8.2 1.0 24 103 130 221 119 249 0.63 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_34 - 336 AAA_14 PF13173.1 128 2.9e-05 16.2 0.2 1 1 4.6e-06 0.00014 14.0 0.0 2 54 160 211 159 254 0.75 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 GvpD PF07088.6 484 0.0003 11.3 0.0 1 1 6.5e-06 0.00039 10.9 0.0 8 42 158 192 150 258 0.83 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_45 - 640 TIGR03594 TIGR03594 432 1.1e-08 26.3 0.3 1 3 0.044 2.7 -1.3 0.0 176 211 4 42 2 50 0.74 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_45 - 640 TIGR03594 TIGR03594 432 1.1e-08 26.3 0.3 2 3 2e-08 1.2e-06 19.6 0.1 31 123 51 135 47 154 0.87 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_45 - 640 TIGR03594 TIGR03594 432 1.1e-08 26.3 0.3 3 3 0.0017 0.1 3.3 0.0 304 348 196 240 186 266 0.82 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 336 AAA_29 PF13555.1 62 2.4e-05 16.0 0.0 1 1 1.9e-06 5.6e-05 14.9 0.0 22 40 159 177 140 184 0.81 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 AAA_29 PF13555.1 62 7.3e-05 14.5 0.3 1 1 6e-06 0.00018 13.2 0.3 18 37 19 38 12 41 0.76 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_34 - 336 Sigma54_activat PF00158.21 168 8.8e-05 14.2 0.0 1 1 3.2e-06 0.00019 13.1 0.0 14 43 152 181 143 198 0.84 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_45 - 640 MMR_HSR1 PF01926.18 116 2.6e-08 26.0 0.1 1 1 8.6e-10 5.2e-08 25.1 0.1 4 116 8 129 5 129 0.68 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_36 - 449 TraG-D_C PF12696.2 128 1.6e-28 91.3 0.0 1 1 1.1e-29 6.6e-28 89.4 0.0 2 127 251 373 250 374 0.89 # 28408 # 29754 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_34 - 336 NTPase_1 PF03266.10 168 0.0004 12.3 0.1 1 1 1.4e-05 0.00081 11.3 0.1 1 23 162 184 162 192 0.88 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 AAA_33 PF13671.1 143 0.00063 11.8 0.2 1 1 3.4e-05 0.0021 10.2 0.2 2 33 27 98 27 225 0.64 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_15 - 598 DnaB_C PF03796.10 259 1.4e-05 16.2 0.0 1 2 8.4e-07 5e-05 14.4 0.0 13 112 27 131 21 156 0.81 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 1_15 - 598 DnaB_C PF03796.10 259 1.4e-05 16.2 0.0 2 2 0.015 0.89 0.5 0.0 122 185 113 177 98 179 0.69 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 2_6 - 1933 Methyltransf_26 PF13659.1 117 3.5e-13 41.9 0.0 1 1 3.5e-14 1.1e-12 40.3 0.0 3 116 312 422 310 423 0.84 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_16 - 419 Methyltransf_26 PF13659.1 117 0.00074 11.8 0.0 1 1 4.4e-05 0.0013 11.0 0.0 3 88 2 132 1 155 0.72 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_34 - 336 AAA_30 PF13604.1 196 0.00084 11.1 0.0 1 1 2.2e-05 0.0013 10.5 0.0 12 44 155 186 146 193 0.72 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 FtsK_SpoIIIE PF01580.13 205 6.7e-08 24.4 0.0 1 1 3.8e-09 1.1e-07 23.7 0.0 36 59 154 181 134 187 0.77 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 923 FtsK_SpoIIIE PF01580.13 205 5.9e-05 14.8 0.0 1 1 4.3e-06 0.00013 13.7 0.0 39 63 539 570 514 576 0.74 # 17458 # 20226 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291 2_6 - 1933 MTS PF05175.9 170 3.1e-05 15.6 0.0 1 1 1.5e-06 8.9e-05 14.1 0.0 31 142 309 423 302 443 0.75 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 2_14 - 175 VirE PF05272.6 198 0.00019 13.1 0.1 1 1 4.5e-06 0.00027 12.6 0.1 45 117 31 105 6 107 0.82 # 13470 # 13994 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_34 - 336 ABC_tran PF00005.22 137 2.4e-07 23.3 0.0 1 1 1.7e-08 5e-07 22.3 0.0 5 50 154 200 152 226 0.84 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_10 - 274 ABC_tran PF00005.22 137 3.5e-05 16.3 5.8 1 1 3.4e-06 0.0001 14.8 5.8 13 135 26 184 19 185 0.54 # 6302 # 7123 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 1_16 - 419 Cons_hypoth95 PF03602.10 183 2.6e-05 15.9 0.1 1 2 1.3e-05 0.00076 11.1 0.0 46 92 3 49 1 69 0.78 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_16 - 419 Cons_hypoth95 PF03602.10 183 2.6e-05 15.9 0.1 2 2 0.012 0.73 1.3 0.0 27 40 270 283 267 306 0.65 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 2_6 - 1933 Eco57I PF07669.6 106 2.4e-08 26.5 2.5 1 1 9.7e-10 5.8e-08 25.3 0.4 3 104 372 473 370 475 0.83 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_23 - 923 AAA_10 PF12846.2 304 2.3e-39 127.7 1.5 1 2 0.096 1.9 -0.1 0.0 126 161 225 283 152 338 0.75 # 17458 # 20226 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291 1_23 - 923 AAA_10 PF12846.2 304 2.3e-39 127.7 1.5 2 2 3.2e-40 6.3e-39 126.3 0.3 2 297 546 839 545 845 0.84 # 17458 # 20226 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291 1_34 - 336 AAA_10 PF12846.2 304 2.9e-06 19.0 0.0 1 1 1.8e-07 3.6e-06 18.7 0.0 2 37 161 196 160 333 0.74 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_36 - 449 AAA_10 PF12846.2 304 0.00015 13.4 0.1 1 1 1e-05 0.00021 12.9 0.1 126 302 104 335 2 336 0.67 # 28408 # 29754 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 2_6 - 1933 ResIII PF04851.10 184 3.1e-10 32.3 9.7 1 1 1e-11 3.1e-10 32.3 9.7 2 161 1000 1196 999 1243 0.57 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_34 - 336 ResIII PF04851.10 184 4.4e-05 15.5 0.0 1 1 2.8e-06 8.5e-05 14.6 0.0 3 64 145 201 143 237 0.72 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_45 - 640 GTP_EFTU_D2 PF03144.20 74 3.9e-09 28.8 0.0 1 1 1.3e-10 8e-09 27.8 0.0 3 60 265 316 263 323 0.90 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 2_6 - 1933 DEAD PF00270.24 169 1.5e-08 26.5 0.6 1 2 6.2e-08 1.8e-06 19.7 0.1 2 107 1004 1110 1003 1245 0.78 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 2_6 - 1933 DEAD PF00270.24 169 1.5e-08 26.5 0.6 2 2 0.093 2.8 -0.4 0.0 120 147 1886 1915 1845 1925 0.70 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_34 - 336 DEAD PF00270.24 169 3.3e-06 18.9 0.0 1 1 1.9e-07 5.6e-06 18.1 0.0 2 69 148 212 147 243 0.71 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_36 - 449 TrwB_AAD_bind PF10412.4 386 9.5e-20 62.6 0.0 1 2 9.4e-05 0.0028 8.4 0.0 63 125 23 90 8 134 0.76 # 28408 # 29754 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_36 - 449 TrwB_AAD_bind PF10412.4 386 9.5e-20 62.6 0.0 2 2 4.4e-18 1.3e-16 52.3 0.0 185 380 190 387 152 389 0.84 # 28408 # 29754 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_34 - 336 TrwB_AAD_bind PF10412.4 386 0.00012 13.0 0.0 1 1 6.1e-06 0.00018 12.3 0.0 16 42 161 187 154 217 0.85 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_36 - 449 T4SS-DNA_transf PF02534.9 469 1.6e-86 282.8 0.2 1 1 7.3e-88 2.2e-86 282.4 0.2 77 460 3 408 1 416 0.90 # 28408 # 29754 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.307 1_35 - 160 T4SS-DNA_transf PF02534.9 469 1.9e-08 25.4 0.3 1 1 8.3e-10 2.5e-08 25.0 0.3 12 67 92 148 82 154 0.66 # 27942 # 28421 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 1_45 - 640 GTP_EFTU PF00009.22 188 3.7e-60 194.7 0.4 1 1 9.1e-62 5.5e-60 194.2 0.4 2 185 2 237 1 240 0.92 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 336 RNA_helicase PF00910.17 107 0.00016 14.1 0.0 1 1 6e-06 0.00036 12.9 0.0 1 23 163 185 163 224 0.79 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 UPF0079 PF02367.12 123 1.9e-05 16.5 0.0 1 1 6e-07 3.6e-05 15.6 0.0 8 42 153 187 147 205 0.85 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_45 - 640 EFG_IV PF03764.13 120 7.6e-26 82.3 0.0 1 1 3.5e-27 2.1e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 37436 # 39355 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_34 - 336 AAA_24 PF13479.1 213 0.00014 13.7 0.0 1 1 5e-06 0.0003 12.6 0.0 5 33 162 188 159 217 0.84 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_34 - 336 NACHT PF05729.7 166 2.1e-05 16.4 0.0 1 1 6e-07 3.6e-05 15.6 0.0 3 22 163 182 161 188 0.89 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_15 - 598 AAA_25 PF13481.1 194 5.8e-22 70.2 0.0 1 1 3.5e-23 1.1e-21 69.3 0.0 30 193 30 175 27 176 0.89 # 9053 # 10846 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.261 1_34 - 336 AAA_25 PF13481.1 194 0.00016 13.3 0.0 1 1 8.2e-06 0.00025 12.7 0.0 29 56 157 183 130 200 0.76 # 26934 # 27941 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_16 - 419 Methyltransf_15 PF09445.5 164 0.00012 13.8 2.1 1 1 4e-06 0.00024 12.9 0.3 3 49 2 49 1 160 0.68 # 10998 # 12254 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 2_6 - 1933 SNF2_N PF00176.18 299 3.5e-21 67.4 4.2 1 3 1.7e-22 1e-20 65.8 0.4 24 204 1015 1275 955 1336 0.76 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 2_6 - 1933 SNF2_N PF00176.18 299 3.5e-21 67.4 4.2 2 3 0.0096 0.58 1.0 0.1 194 286 1462 1558 1445 1567 0.73 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 2_6 - 1933 SNF2_N PF00176.18 299 3.5e-21 67.4 4.2 3 3 0.068 4.1 -1.8 0.0 123 151 1873 1902 1837 1916 0.75 # 4206 # 10004 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a65164eb-9fbf-420d-b637-bd481a514e73 # Target file: checkm_output/bins/pNZ_CP017877.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP017877.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a65164eb-9fbf-420d-b637-bd481a514e73 checkm_output/bins/pNZ_CP017877.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:48 2020 # [ok]