# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 182 Rad17 PF03215.10 519 0.00026 12.0 0.1 1 2 9.5e-06 0.00062 10.7 0.0 45 70 4 29 1 39 0.88 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 Rad17 PF03215.10 519 0.00026 12.0 0.1 2 2 0.057 3.7 -1.7 0.0 358 397 127 169 109 175 0.65 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_53 - 598 IstB_IS21 PF01695.12 178 3.1e-06 19.0 0.0 1 2 1.1e-06 7e-05 14.6 0.0 46 85 32 71 27 92 0.86 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_53 - 598 IstB_IS21 PF01695.12 178 3.1e-06 19.0 0.0 2 2 0.013 0.85 1.3 0.0 98 140 110 160 98 187 0.71 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_25 - 640 AIG1 PF04548.11 212 0.00018 12.9 0.0 1 1 6.6e-06 0.00043 11.7 0.0 32 62 51 81 43 108 0.84 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_45 - 141 SSB PF00436.20 104 2.7e-28 90.2 0.1 1 1 5.3e-30 3.4e-28 89.9 0.1 1 102 1 102 1 104 0.98 # 40128 # 40550 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_37 - 340 DUF87 PF01935.12 229 6e-05 15.2 0.0 1 1 1.8e-06 0.00012 14.3 0.0 27 48 164 185 142 193 0.84 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 NB-ARC PF00931.17 287 0.00014 13.1 0.1 1 1 3.7e-06 0.00024 12.3 0.1 20 46 5 31 1 47 0.83 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 Septin PF00735.13 281 4.8e-05 14.7 0.0 1 1 2.4e-06 7.9e-05 14.0 0.0 6 29 162 185 158 209 0.80 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_25 - 640 Septin PF00735.13 281 0.00018 12.9 0.1 1 1 9.7e-06 0.00032 12.0 0.1 7 77 6 82 3 91 0.68 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_19 - 182 AAA_22 PF13401.1 131 9.8e-07 21.3 0.4 1 1 1.9e-07 4e-06 19.3 0.1 3 28 3 28 1 84 0.86 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_22 PF13401.1 131 1.1e-05 17.9 0.0 1 1 1.2e-06 2.6e-05 16.7 0.0 4 41 160 208 156 260 0.71 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_23 - 96 AAA_22 PF13401.1 131 0.00021 13.7 0.1 1 1 1.5e-05 0.00031 13.2 0.1 54 101 14 68 4 92 0.72 # 19197 # 19484 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_37 - 340 ATP_bind_1 PF03029.12 238 0.00015 13.6 0.0 1 1 3.8e-06 0.00025 12.9 0.0 1 23 165 187 165 193 0.87 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 SRP54 PF00448.17 196 5.5e-05 14.9 0.1 1 1 1.6e-06 0.0001 14.1 0.1 3 40 6 42 4 50 0.84 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 AAA_17 PF13207.1 121 6.1e-13 42.0 0.0 1 1 2.2e-14 7.2e-13 41.8 0.0 1 115 6 129 6 164 0.69 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_17 PF13207.1 121 5.9e-06 19.4 0.1 1 1 4.3e-07 1.4e-05 18.2 0.1 2 49 163 207 162 321 0.82 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_62 - 94 AAA_21 PF13304.1 303 0.0018 10.5 11.3 1 1 3.3e-05 0.0021 10.3 11.3 80 162 6 88 2 92 0.92 # 52455 # 52736 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.202 1_25 - 640 Miro PF08477.8 119 1.3e-05 18.0 0.0 1 1 8.7e-07 2.8e-05 16.9 0.0 9 119 13 131 5 131 0.75 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_19 - 182 Miro PF08477.8 119 0.00021 14.1 0.9 1 1 1.7e-05 0.00057 12.7 0.1 2 33 7 38 6 48 0.88 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 MobB PF03205.9 140 2.4e-05 16.3 0.3 1 1 4.7e-06 0.00015 13.8 0.0 3 27 163 187 161 199 0.81 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 MobB PF03205.9 140 0.00031 12.8 0.1 1 1 2.1e-05 0.00068 11.7 0.1 2 24 6 28 5 41 0.78 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_3 - 1932 Helicase_C PF00271.26 78 1.7e-07 23.4 0.3 1 2 0.055 3.6 -0.1 0.0 14 40 1078 1104 1064 1106 0.84 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_3 - 1932 Helicase_C PF00271.26 78 1.7e-07 23.4 0.3 2 2 4.2e-08 2.7e-06 19.5 0.0 12 78 1515 1583 1508 1583 0.86 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_19 - 182 PhoH PF02562.11 205 0.00026 12.5 0.1 1 1 7.6e-06 0.00049 11.6 0.1 18 49 3 34 1 36 0.84 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 T2SE PF00437.15 272 7.4e-64 207.5 0.0 1 1 2.6e-65 8.6e-64 207.3 0.0 6 269 14 312 9 315 0.95 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 T2SE PF00437.15 272 4.7e-05 14.7 0.0 1 1 2.1e-06 6.7e-05 14.1 0.0 129 156 5 32 1 73 0.87 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 SKI PF01202.17 158 0.0014 10.8 2.5 1 1 0.00013 0.0087 8.2 2.5 1 38 13 53 13 174 0.65 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 Cytidylate_kin2 PF13189.1 179 9.9e-06 17.8 0.8 1 2 0.00052 0.034 6.3 0.1 1 24 6 29 6 32 0.92 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 Cytidylate_kin2 PF13189.1 179 9.9e-06 17.8 0.8 2 2 3.3e-05 0.0022 10.2 0.0 87 147 70 138 28 147 0.68 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 Zeta_toxin PF06414.7 201 6.1e-11 34.0 0.1 1 1 3.6e-12 1.2e-10 33.1 0.1 17 148 5 131 2 177 0.78 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 Zeta_toxin PF06414.7 201 8e-05 14.1 0.0 1 1 4.3e-06 0.00014 13.3 0.0 17 49 161 194 147 218 0.85 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_37 - 340 Arch_ATPase PF01637.13 234 0.00019 13.5 0.0 1 1 9.6e-06 0.00031 12.7 0.0 23 81 163 225 152 282 0.84 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 Arch_ATPase PF01637.13 234 0.00029 12.8 0.1 1 2 0.00091 0.03 6.3 0.0 20 46 4 30 1 74 0.82 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 Arch_ATPase PF01637.13 234 0.00029 12.8 0.1 2 2 0.0025 0.081 4.8 0.1 48 109 102 165 93 179 0.54 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_16 PF13191.1 185 3.3e-05 16.2 0.0 1 1 1.4e-06 4.7e-05 15.7 0.0 24 81 160 234 148 310 0.77 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 AAA_16 PF13191.1 185 0.00013 14.3 0.0 1 1 7e-06 0.00023 13.5 0.0 23 47 3 27 2 83 0.84 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_23 PF13476.1 202 0.00068 12.3 4.2 1 1 9.2e-06 0.0006 12.5 2.0 22 37 163 178 141 185 0.89 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 AAA_18 PF13238.1 129 1.2e-15 50.3 0.0 1 1 5e-17 1.6e-15 49.9 0.0 1 123 7 135 7 143 0.76 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_18 PF13238.1 129 0.00011 14.8 0.4 1 1 1e-05 0.00033 13.3 0.0 1 18 163 180 163 227 0.76 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_5 - 187 CbiA PF01656.18 195 2.3e-08 25.9 0.1 1 2 1.3e-06 4.2e-05 15.3 0.0 1 24 3 26 3 32 0.92 # 7458 # 8018 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_5 - 187 CbiA PF01656.18 195 2.3e-08 25.9 0.1 2 2 0.0001 0.0033 9.1 0.0 95 178 54 131 29 151 0.68 # 7458 # 8018 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 1_19 - 182 CbiA PF01656.18 195 0.0026 9.5 3.9 1 1 0.00091 0.029 6.0 3.9 1 22 6 27 6 172 0.66 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_53 - 598 KaiC PF06745.8 227 2.6e-05 15.7 0.0 1 1 3.8e-06 0.00012 13.5 0.0 16 71 30 84 23 214 0.85 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_19 - 182 KaiC PF06745.8 227 3.7e-05 15.2 1.0 1 1 2e-06 6.4e-05 14.4 0.1 18 37 3 22 1 35 0.87 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 AAA_14 PF13173.1 128 4.3e-07 22.2 0.0 1 1 1.9e-08 6.2e-07 21.7 0.0 2 120 4 137 3 145 0.69 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_14 PF13173.1 128 3e-05 16.2 0.2 1 1 4.7e-06 0.00015 14.0 0.0 2 54 160 211 159 254 0.75 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_37 - 340 GvpD PF07088.6 484 0.00032 11.3 0.0 1 1 6.6e-06 0.00043 10.9 0.0 8 42 158 192 150 258 0.83 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_25 - 640 TIGR03594 TIGR03594 432 1.2e-08 26.3 0.3 1 3 0.044 2.9 -1.3 0.0 176 211 4 42 2 50 0.74 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_25 - 640 TIGR03594 TIGR03594 432 1.2e-08 26.3 0.3 2 3 2e-08 1.3e-06 19.6 0.1 31 123 51 135 47 154 0.87 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_25 - 640 TIGR03594 TIGR03594 432 1.2e-08 26.3 0.3 3 3 0.0017 0.11 3.3 0.0 304 348 196 240 186 266 0.82 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_37 - 340 AAA_29 PF13555.1 62 2.7e-05 16.0 0.0 1 1 9.5e-07 6.2e-05 14.8 0.0 22 40 159 177 140 184 0.81 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 AAA PF00004.24 132 3.2e-08 26.2 0.3 1 2 1e-08 3.3e-07 22.9 0.1 2 34 8 41 7 82 0.79 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 AAA PF00004.24 132 3.2e-08 26.2 0.3 2 2 0.037 1.2 1.7 0.0 104 131 108 135 58 136 0.86 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_53 - 598 AAA PF00004.24 132 6.9e-05 15.4 0.2 1 2 5e-05 0.0016 10.9 0.0 2 105 37 166 36 177 0.66 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_53 - 598 AAA PF00004.24 132 6.9e-05 15.4 0.2 2 2 0.05 1.6 1.2 0.0 47 74 411 434 377 459 0.70 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_37 - 340 Sigma54_activat PF00158.21 168 9.4e-05 14.2 0.0 1 1 6.5e-06 0.00021 13.1 0.0 14 43 152 181 143 198 0.84 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 Sigma54_activat PF00158.21 168 0.00015 13.5 0.0 1 1 8.8e-06 0.00028 12.7 0.0 25 68 7 57 1 89 0.75 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_25 - 640 MMR_HSR1 PF01926.18 116 3e-08 26.0 0.1 1 1 8.6e-10 5.6e-08 25.1 0.1 4 116 8 129 5 129 0.68 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_35 - 604 TraG-D_C PF12696.2 128 1.8e-27 88.1 0.0 1 1 1.1e-28 6.9e-27 86.2 0.0 2 127 406 528 405 529 0.88 # 31360 # 33171 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_19 - 182 NTPase_1 PF03266.10 168 8.5e-05 14.6 0.4 1 1 6.4e-06 0.00021 13.3 0.4 2 22 7 27 6 35 0.85 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 NTPase_1 PF03266.10 168 0.00045 12.3 0.1 1 1 2.7e-05 0.00089 11.3 0.1 1 23 162 184 162 192 0.88 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 AAA_33 PF13671.1 143 9.8e-14 43.7 0.0 1 1 2.1e-15 1.3e-13 43.3 0.0 2 129 7 137 6 146 0.84 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 KTI12 PF08433.5 270 6e-06 17.9 0.0 1 2 2.2e-07 1.4e-05 16.6 0.0 3 43 6 45 5 87 0.71 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 KTI12 PF08433.5 270 6e-06 17.9 0.0 2 2 0.084 5.5 -1.7 0.0 250 268 126 144 102 173 0.61 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_53 - 598 DnaB_C PF03796.10 259 3.4e-06 18.4 0.0 1 2 2.1e-07 1.4e-05 16.3 0.0 13 117 27 136 23 156 0.79 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_53 - 598 DnaB_C PF03796.10 259 3.4e-06 18.4 0.0 2 2 0.011 0.73 0.9 0.0 129 185 119 177 101 179 0.77 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_3 - 1932 Methyltransf_26 PF13659.1 117 3.6e-13 41.9 0.0 1 1 1.7e-14 1.1e-12 40.3 0.0 3 116 311 421 309 422 0.84 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_19 - 182 AAA_30 PF13604.1 196 5e-05 15.2 0.1 1 1 2.9e-06 9.4e-05 14.3 0.1 17 40 3 26 1 38 0.83 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_30 PF13604.1 196 0.00092 11.1 0.0 1 1 4.4e-05 0.0014 10.5 0.0 12 44 155 186 146 193 0.72 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_37 - 340 FtsK_SpoIIIE PF01580.13 205 7.4e-08 24.4 0.0 1 1 1.9e-09 1.2e-07 23.6 0.0 36 59 154 181 134 187 0.77 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_3 - 1932 MTS PF05175.9 170 3.2e-05 15.7 0.0 1 1 1.4e-06 9e-05 14.2 0.0 32 142 309 422 301 442 0.75 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 340 ABC_tran PF00005.22 137 2.6e-07 23.3 0.0 1 1 1.7e-08 5.5e-07 22.3 0.0 5 50 154 200 152 226 0.84 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 ABC_tran PF00005.22 137 1.1e-05 18.0 0.1 1 1 4.7e-07 1.5e-05 17.6 0.1 9 43 2 35 1 133 0.85 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 TIGR03263 TIGR03263 180 9.8e-05 14.0 0.2 1 2 7.5e-06 0.00049 11.7 0.0 1 36 4 38 4 75 0.87 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 TIGR03263 TIGR03263 180 9.8e-05 14.0 0.2 2 2 0.025 1.6 0.3 0.1 110 142 103 135 96 172 0.67 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 ATP-synt_ab PF00006.20 215 0.00016 13.5 0.0 1 1 2.9e-06 0.00019 13.3 0.0 14 48 3 37 1 179 0.70 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_3 - 1932 Eco57I PF07669.6 106 1.5e-08 27.3 2.3 1 1 6.8e-10 4.4e-08 25.8 0.3 3 104 371 472 369 474 0.84 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_19 - 182 RuvB_N PF05496.7 234 1.1e-05 16.9 0.2 1 1 4.1e-07 2.7e-05 15.6 0.0 53 76 7 30 3 41 0.85 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 AAA_19 PF13245.1 76 1.3e-07 23.7 0.1 1 1 4.8e-09 3.1e-07 22.4 0.1 10 32 4 25 1 34 0.84 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_48 - 923 AAA_10 PF12846.2 304 5.4e-38 123.3 1.5 1 2 0.091 2 -0.0 0.0 126 161 221 283 153 336 0.76 # 41700 # 44468 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_48 - 923 AAA_10 PF12846.2 304 5.4e-38 123.3 1.5 2 2 7.4e-39 1.6e-37 121.8 0.4 2 301 546 843 545 845 0.83 # 41700 # 44468 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_37 - 340 AAA_10 PF12846.2 304 2.8e-06 19.2 0.0 1 1 1.7e-07 3.6e-06 18.9 0.0 2 38 161 197 160 337 0.68 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_35 - 604 AAA_10 PF12846.2 304 0.00012 13.8 0.0 1 1 9.6e-06 0.00021 13.1 0.0 32 302 154 490 127 491 0.75 # 31360 # 33171 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_3 - 1932 ResIII PF04851.10 184 2.6e-10 32.7 10.0 1 1 8.1e-12 2.6e-10 32.7 10.0 2 161 999 1195 998 1242 0.61 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 340 ResIII PF04851.10 184 4.6e-05 15.6 0.0 1 1 2.9e-06 9.4e-05 14.6 0.0 3 64 145 201 143 237 0.72 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_25 - 640 GTP_EFTU_D2 PF03144.20 74 4.2e-09 28.8 0.0 1 1 1.3e-10 8.7e-09 27.8 0.0 3 60 265 316 263 323 0.90 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_19 - 182 DUF2075 PF09848.4 352 7.4e-06 17.4 0.0 1 1 1.6e-07 1e-05 16.9 0.0 2 29 5 32 4 85 0.83 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 TIP49 PF06068.8 398 0.00013 13.0 0.1 1 2 6.2e-06 0.0004 11.4 0.0 50 77 4 31 2 45 0.84 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 TIP49 PF06068.8 398 0.00013 13.0 0.1 2 2 0.043 2.8 -1.3 0.1 149 178 127 156 106 172 0.73 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_3 - 1932 DEAD PF00270.24 169 1.5e-08 26.6 0.8 1 3 9.4e-08 3.1e-06 19.1 0.0 2 106 1003 1108 1002 1113 0.80 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_3 - 1932 DEAD PF00270.24 169 1.5e-08 26.6 0.8 2 3 0.01 0.34 2.7 0.1 114 133 1172 1194 1158 1244 0.75 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_3 - 1932 DEAD PF00270.24 169 1.5e-08 26.6 0.8 3 3 0.073 2.4 -0.1 0.0 120 150 1885 1917 1843 1926 0.70 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 340 DEAD PF00270.24 169 3.5e-06 18.9 0.0 1 1 1.9e-07 6.2e-06 18.1 0.0 2 69 148 212 147 243 0.71 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_35 - 604 TrwB_AAD_bind PF10412.4 386 1.8e-20 65.1 0.0 1 2 2.5e-06 8.1e-05 13.6 0.0 39 150 147 270 124 297 0.71 # 31360 # 33171 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_35 - 604 TrwB_AAD_bind PF10412.4 386 1.8e-20 65.1 0.0 2 2 3e-17 9.6e-16 49.6 0.0 185 380 345 542 306 544 0.84 # 31360 # 33171 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_37 - 340 TrwB_AAD_bind PF10412.4 386 0.00013 13.0 0.0 1 1 6.3e-06 0.0002 12.3 0.0 16 42 161 187 154 217 0.85 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 AAA_11 PF13086.1 236 6.4e-05 14.9 0.6 1 1 1.6e-06 0.00011 14.2 0.6 17 44 4 41 1 178 0.70 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 CPT PF07931.7 174 1.1e-11 36.9 0.0 1 1 3.3e-13 2.1e-11 36.0 0.0 1 172 4 172 4 174 0.81 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_35 - 604 T4SS-DNA_transf PF02534.9 469 3e-106 348.0 0.1 1 1 6.4e-108 4.2e-106 347.5 0.1 3 460 94 563 82 571 0.88 # 31360 # 33171 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.311 1_25 - 640 GTP_EFTU PF00009.22 188 4.2e-60 194.7 0.4 1 1 9.3e-62 6.1e-60 194.1 0.4 2 185 2 237 1 240 0.92 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_37 - 340 RNA_helicase PF00910.17 107 0.00017 14.1 0.0 1 1 1.2e-05 0.00039 12.9 0.0 1 23 163 185 163 224 0.79 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 RNA_helicase PF00910.17 107 0.00033 13.2 0.0 1 1 1.8e-05 0.00057 12.4 0.0 1 24 7 31 7 78 0.68 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 UPF0079 PF02367.12 123 2.1e-05 16.5 0.0 1 1 6.1e-07 4e-05 15.6 0.0 8 42 153 187 147 205 0.85 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_25 - 640 EFG_IV PF03764.13 120 8.2e-26 82.3 0.0 1 1 3.5e-27 2.3e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 20413 # 22332 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 1_37 - 340 AAA_24 PF13479.1 213 0.00016 13.6 0.0 1 1 1e-05 0.00033 12.6 0.0 5 33 162 188 159 217 0.84 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 AAA_24 PF13479.1 213 0.00034 12.5 0.2 1 1 2.1e-05 0.00069 11.5 0.0 5 22 6 23 2 39 0.86 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 NACHT PF05729.7 166 2.3e-05 16.4 0.0 1 1 1.2e-06 4e-05 15.6 0.0 3 22 163 182 161 188 0.89 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_19 - 182 NACHT PF05729.7 166 0.00047 12.1 0.0 1 1 3.4e-05 0.0011 10.9 0.0 1 32 5 36 5 57 0.75 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_53 - 598 AAA_25 PF13481.1 194 7.8e-22 69.9 0.0 1 1 6.8e-23 1.5e-21 69.0 0.0 30 193 30 175 20 176 0.90 # 46376 # 48169 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.274 1_19 - 182 AAA_25 PF13481.1 194 0.00014 13.6 0.5 1 1 2.5e-05 0.00054 11.7 0.3 32 51 3 22 1 28 0.86 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_37 - 340 AAA_25 PF13481.1 194 0.00018 13.2 0.0 1 1 1.3e-05 0.00027 12.6 0.0 29 56 157 183 130 200 0.76 # 33968 # 34987 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.341 1_3 - 1932 SNF2_N PF00176.18 299 1.1e-20 65.8 0.4 1 3 1.7e-22 1.1e-20 65.8 0.4 24 204 1014 1274 954 1335 0.76 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_3 - 1932 SNF2_N PF00176.18 299 1.1e-20 65.8 0.4 2 3 0.0096 0.63 1.0 0.1 194 286 1461 1557 1444 1566 0.73 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_3 - 1932 SNF2_N PF00176.18 299 1.1e-20 65.8 0.4 3 3 0.043 2.8 -1.1 0.1 123 151 1872 1901 1835 1924 0.70 # 1347 # 7142 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_19 - 182 AAA_28 PF13521.1 163 5.7e-07 21.9 0.1 1 2 2.9e-08 1.9e-06 20.2 0.0 2 37 7 47 6 86 0.63 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 AAA_28 PF13521.1 163 5.7e-07 21.9 0.1 2 2 0.092 6 -0.9 0.1 73 89 145 161 96 178 0.55 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 APS_kinase PF01583.15 157 1.7e-05 16.8 0.0 1 2 5.3e-06 0.00034 12.6 0.0 1 84 3 90 3 114 0.66 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_19 - 182 APS_kinase PF01583.15 157 1.7e-05 16.8 0.0 2 2 0.0073 0.47 2.4 0.0 44 74 118 148 98 155 0.85 # 16854 # 17399 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ddab00a5-6b9f-4651-a915-4ec9dd51862a # Target file: checkm_output/bins/pNZ_CP017872.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP017872.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ddab00a5-6b9f-4651-a915-4ec9dd51862a checkm_output/bins/pNZ_CP017872.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:47 2020 # [ok]