# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 312 Mg_chelatase PF01078.16 207 0.00021 11.7 0.0 1 1 1.4e-05 0.00042 10.7 0.0 11 54 131 174 125 198 0.78 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 Thymidylate_kin PF02223.12 186 5.3e-06 17.2 0.2 1 2 9.2e-06 0.00029 11.5 0.0 6 44 11 51 10 62 0.77 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_24 - 229 Thymidylate_kin PF02223.12 186 5.3e-06 17.2 0.2 2 2 0.0029 0.09 3.4 0.4 129 169 183 225 150 228 0.71 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_6 - 146 FeoB_N PF02421.13 156 7.5e-05 13.3 1.3 1 1 3.7e-06 0.00012 12.7 1.3 13 94 56 135 53 140 0.93 # 2433 # 2870 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.256 1_16 - 312 IstB_IS21 PF01695.12 178 4e-06 17.6 0.0 1 1 2.5e-07 7.7e-06 16.7 0.0 44 82 139 179 111 208 0.72 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 MipZ PF09140.6 261 7.9e-17 52.4 0.4 1 2 2.6e-15 4e-14 43.5 0.3 2 140 2 121 1 132 0.83 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_24 - 229 MipZ PF09140.6 261 7.9e-17 52.4 0.4 2 2 0.072 1.1 -0.6 0.0 128 173 132 177 127 205 0.73 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 MipZ PF09140.6 261 2.7e-05 14.6 0.0 1 1 2.4e-06 3.7e-05 14.1 0.0 5 46 7 48 3 85 0.90 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_24 - 229 YhjQ PF06564.7 244 2.5e-05 15.0 0.0 1 1 2.8e-06 4.3e-05 14.2 0.0 10 42 9 41 1 54 0.89 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 YhjQ PF06564.7 244 0.00031 11.4 0.0 1 1 3.7e-05 0.00057 10.5 0.0 7 45 9 46 3 55 0.87 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_2 - 121 SSB PF00436.20 104 5e-23 72.3 0.1 1 1 2e-24 6.1e-23 72.0 0.1 1 103 2 98 2 99 0.96 # 113 # 475 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.309 1_13 - 822 DUF87 PF01935.12 229 6.2e-07 20.7 3.5 1 2 0.061 0.63 1.0 0.2 100 154 114 167 75 201 0.64 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 DUF87 PF01935.12 229 6.2e-07 20.7 3.5 2 2 2.5e-07 2.6e-06 18.6 0.0 10 59 441 490 436 493 0.76 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 DUF87 PF01935.12 229 2.2e-06 18.9 0.1 1 1 4.3e-07 4.5e-06 17.8 0.1 25 58 144 178 125 210 0.91 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 DUF87 PF01935.12 229 4.5e-05 14.6 1.7 1 2 0.00021 0.0021 9.1 0.0 33 60 11 37 9 39 0.94 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_24 - 229 DUF87 PF01935.12 229 4.5e-05 14.6 1.7 2 2 0.0045 0.046 4.7 0.5 46 147 72 183 63 225 0.66 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_13 - 822 AAA_22 PF13401.1 131 4.3e-11 34.4 0.8 1 2 0.0067 0.21 3.0 0.1 78 113 122 163 75 176 0.76 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_22 PF13401.1 131 4.3e-11 34.4 0.8 2 2 1.3e-08 3.9e-07 21.6 0.0 5 88 455 569 451 690 0.71 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 ATP_bind_1 PF03029.12 238 9.3e-05 13.3 0.3 1 1 2e-05 0.0003 11.6 0.0 1 24 147 170 147 189 0.82 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 ATP_bind_1 PF03029.12 238 0.00026 11.8 0.1 1 2 0.0055 0.085 3.6 0.1 190 237 146 205 105 206 0.71 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 ATP_bind_1 PF03029.12 238 0.00026 11.8 0.1 2 2 0.0014 0.021 5.5 0.0 1 20 459 478 459 490 0.79 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_24 - 229 SRP54 PF00448.17 196 9.6e-09 26.2 0.1 1 1 9.8e-10 3e-08 24.5 0.0 11 98 11 94 2 124 0.83 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 AAA_17 PF13207.1 121 3.4e-05 15.9 0.2 1 1 9.2e-06 7.1e-05 14.9 0.2 5 78 9 113 6 215 0.69 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_24 - 229 AAA_17 PF13207.1 121 4.8e-05 15.5 0.3 1 1 3.2e-05 0.00024 13.2 0.3 9 32 11 39 10 224 0.83 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_16 - 312 AAA_17 PF13207.1 121 5.2e-05 15.4 1.8 1 1 2.3e-05 0.00018 13.6 1.0 2 19 145 162 144 167 0.93 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 AAA_17 PF13207.1 121 0.00015 13.9 1.5 1 1 0.00012 0.00094 11.3 0.0 3 18 458 473 457 540 0.90 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 MobB PF03205.9 140 0.00015 12.8 0.0 1 2 0.076 2.4 -0.9 0.0 92 110 242 259 230 274 0.79 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 MobB PF03205.9 140 0.00015 12.8 0.0 2 2 4.5e-05 0.0014 9.6 0.0 4 42 458 494 456 499 0.86 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_24 - 229 ArsA_ATPase PF02374.10 305 3.8e-10 30.5 1.1 1 2 5.4e-11 8.3e-10 29.3 0.2 6 109 6 110 1 130 0.76 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_24 - 229 ArsA_ATPase PF02374.10 305 3.8e-10 30.5 1.1 2 2 0.057 0.89 -0.3 0.0 89 105 152 168 103 212 0.56 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 ArsA_ATPase PF02374.10 305 1.5e-06 18.6 0.1 1 1 2.2e-07 3.4e-06 17.5 0.0 4 40 6 42 3 59 0.92 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 312 PhoH PF02562.11 205 3.9e-05 14.2 0.1 1 1 2.9e-06 9.1e-05 13.0 0.1 6 56 128 179 125 202 0.75 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 T2SE PF00437.15 272 9.2e-83 268.4 0.8 1 1 7.4e-84 1.1e-82 268.1 0.8 8 270 23 285 18 287 0.98 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 T2SE PF00437.15 272 8.8e-06 16.0 0.0 1 1 1e-06 1.6e-05 15.1 0.0 121 155 447 481 424 490 0.79 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 Zeta_toxin PF06414.7 201 1.5e-05 15.4 0.0 1 1 1.7e-06 2.6e-05 14.6 0.0 15 49 141 179 129 218 0.77 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 Zeta_toxin PF06414.7 201 6.7e-05 13.3 0.2 1 1 1.7e-05 0.00026 11.3 0.0 25 55 10 42 8 103 0.69 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_13 - 822 SMC_N PF02463.14 220 0.00017 12.1 2.8 1 2 0.041 1.3 -0.6 0.1 70 124 53 107 42 118 0.66 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 SMC_N PF02463.14 220 0.00017 12.1 2.8 2 2 1e-05 0.00031 11.2 0.0 25 55 455 483 446 491 0.84 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_24 - 229 VirC1 PF07015.6 231 2.4e-13 40.9 0.1 1 1 1.4e-14 4.4e-13 40.0 0.1 4 150 3 145 1 204 0.76 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_24 - 229 Fer4_NifH PF00142.13 273 5e-08 23.6 0.2 1 1 1.1e-08 1.7e-07 21.9 0.0 6 60 7 59 2 94 0.72 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 Fer4_NifH PF00142.13 273 5.2e-06 17.0 0.0 1 1 5.7e-07 8.9e-06 16.2 0.0 4 74 7 75 4 92 0.77 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 822 Arch_ATPase PF01637.13 234 1.3e-05 16.2 3.3 1 3 0.091 2.8 -1.3 0.3 94 113 141 165 81 199 0.51 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 Arch_ATPase PF01637.13 234 1.3e-05 16.2 3.3 2 3 1e-06 3.2e-05 14.9 0.0 23 58 457 492 455 501 0.90 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 Arch_ATPase PF01637.13 234 1.3e-05 16.2 3.3 3 3 0.046 1.4 -0.3 0.1 83 150 609 674 547 695 0.60 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_29 - 240 AAA_16 PF13191.1 185 4.6e-05 14.7 0.0 1 1 8e-06 6.2e-05 14.3 0.0 27 119 6 102 5 147 0.78 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 822 AAA_16 PF13191.1 185 6.1e-05 14.3 0.1 1 1 4.8e-05 0.00037 11.7 0.1 26 51 456 481 446 655 0.90 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 AAA_16 PF13191.1 185 6.7e-05 14.2 0.1 1 1 3.3e-05 0.00026 12.3 0.1 22 49 140 167 132 178 0.84 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 AAA_16 PF13191.1 185 0.00014 13.1 0.0 1 1 2.7e-05 0.00021 12.6 0.0 34 75 11 59 9 178 0.75 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_13 - 822 AAA_23 PF13476.1 202 3.7e-07 21.9 0.1 1 2 0.002 0.031 5.8 0.8 130 198 93 166 12 200 0.52 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_23 PF13476.1 202 3.7e-07 21.9 0.1 2 2 2.4e-08 3.7e-07 21.9 0.1 20 43 455 478 443 632 0.80 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 AAA_23 PF13476.1 202 0.0015 10.1 6.1 1 1 6.2e-05 0.00095 10.7 3.2 18 39 141 162 124 309 0.89 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 AAA_18 PF13238.1 129 5.7e-07 21.2 1.3 1 1 3.4e-07 3.5e-06 18.6 0.5 8 85 11 114 9 194 0.72 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_13 - 822 AAA_18 PF13238.1 129 0.00038 12.1 0.9 1 1 0.00059 0.0061 8.2 0.0 2 17 458 473 458 495 0.87 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 AAA_18 PF13238.1 129 0.0023 9.5 6.3 1 2 0.00029 0.003 9.1 1.1 1 17 145 161 145 167 0.92 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 AAA_18 PF13238.1 129 0.0023 9.5 6.3 2 2 0.042 0.44 2.2 0.0 72 111 172 207 160 222 0.78 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 CbiA PF01656.18 195 6.9e-26 82.1 0.7 1 1 1.2e-26 1.3e-25 81.2 0.7 1 177 3 162 3 193 0.73 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 CbiA PF01656.18 195 1.8e-11 35.0 0.2 1 1 2.2e-12 2.2e-11 34.7 0.2 3 48 7 50 5 185 0.75 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_13 - 822 CbiA PF01656.18 195 0.00012 12.8 0.0 1 1 3.3e-05 0.00034 11.3 0.0 8 49 463 513 457 594 0.70 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 KaiC PF06745.8 227 7.3e-06 16.4 0.0 1 1 4.8e-07 1.5e-05 15.4 0.0 12 46 135 168 113 197 0.79 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 AAA_14 PF13173.1 128 0.00077 10.6 0.0 1 4 0.045 1.4 0.1 1.3 61 80 136 155 74 235 0.63 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_14 PF13173.1 128 0.00077 10.6 0.0 2 4 0.091 2.8 -0.9 0.0 50 83 258 301 228 310 0.63 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_14 PF13173.1 128 0.00077 10.6 0.0 3 4 2.5e-05 0.00077 10.6 0.0 5 39 457 491 455 507 0.81 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_14 PF13173.1 128 0.00077 10.6 0.0 4 4 0.026 0.8 0.9 0.0 52 107 633 698 599 711 0.61 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_29 PF13555.1 62 3.1e-07 21.2 0.0 1 1 6.6e-08 1e-06 19.5 0.0 22 41 454 472 444 484 0.81 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 AAA_29 PF13555.1 62 1e-05 16.3 1.3 1 1 7.6e-07 1.2e-05 16.1 0.1 22 44 141 163 130 173 0.85 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 AAA PF00004.24 132 1.4e-05 16.5 0.9 1 4 0.016 0.49 1.9 0.0 58 92 272 308 252 321 0.72 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA PF00004.24 132 1.4e-05 16.5 0.9 2 4 0.0028 0.087 4.3 0.0 31 74 287 331 281 337 0.83 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA PF00004.24 132 1.4e-05 16.5 0.9 3 4 0.0019 0.06 4.8 0.0 2 20 458 476 457 497 0.80 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA PF00004.24 132 1.4e-05 16.5 0.9 4 4 0.015 0.47 1.9 0.0 49 114 635 692 629 708 0.77 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 Sigma54_activat PF00158.21 168 8.2e-05 13.4 0.0 1 1 4.9e-06 0.00015 12.5 0.0 14 45 134 165 123 197 0.73 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 MMR_HSR1 PF01926.18 116 0.00036 11.8 2.4 1 1 7.2e-05 0.0022 9.2 2.4 2 27 145 169 144 310 0.74 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_30 - 608 TraG-D_C PF12696.2 128 4.5e-31 98.7 0.1 1 1 2.8e-32 8.6e-31 97.8 0.1 2 127 432 552 431 553 0.90 # 20820 # 22643 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_24 - 229 AAA_31 PF13614.1 157 1.8e-13 42.0 0.1 1 1 3.3e-13 5.1e-12 37.2 0.0 2 124 2 120 1 120 0.87 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_29 - 240 AAA_31 PF13614.1 157 1.2e-06 19.7 0.1 1 2 8.8e-07 1.4e-05 16.4 0.0 1 79 3 75 3 110 0.77 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_29 - 240 AAA_31 PF13614.1 157 1.2e-06 19.7 0.1 2 2 0.039 0.61 1.3 0.1 25 63 175 214 173 226 0.76 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 312 AAA_33 PF13671.1 143 0.00023 12.3 0.8 1 1 2.3e-05 0.00072 10.7 0.8 2 20 145 163 145 233 0.81 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 AAA_30 PF13604.1 196 3.1e-06 18.1 0.0 1 1 2.1e-07 6.6e-06 17.0 0.0 2 51 127 177 126 205 0.82 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 FtsK_SpoIIIE PF01580.13 205 6.8e-10 30.0 0.0 1 1 8.2e-11 1.3e-09 29.1 0.0 34 100 138 198 123 222 0.77 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 FtsK_SpoIIIE PF01580.13 205 4.5e-07 20.7 0.0 1 1 1.2e-07 1.9e-06 18.7 0.0 33 64 447 480 428 498 0.77 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 ABC_tran PF00005.22 137 8.9e-07 20.6 0.2 1 1 4.8e-07 7.5e-06 17.6 0.0 4 37 447 480 445 608 0.76 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 ABC_tran PF00005.22 137 7.3e-05 14.3 0.4 1 1 1.2e-05 0.00019 13.0 0.4 8 36 139 167 135 204 0.81 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 AAA_19 PF13245.1 76 5.5e-06 17.4 0.0 1 1 8.3e-07 1.3e-05 16.2 0.0 2 48 134 178 133 196 0.79 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 AAA_19 PF13245.1 76 1.6e-05 15.9 0.0 1 1 2.5e-06 3.8e-05 14.7 0.0 20 48 11 35 3 49 0.88 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_13 - 822 AAA_10 PF12846.2 304 2.7e-36 116.7 0.4 1 2 0.0039 0.024 5.2 0.1 76 185 147 279 79 288 0.61 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_10 PF12846.2 304 2.7e-36 116.7 0.4 2 2 7.9e-35 4.9e-34 109.3 0.0 2 289 455 715 454 724 0.89 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_30 - 608 AAA_10 PF12846.2 304 5.4e-09 27.1 0.0 1 1 1.7e-09 1.1e-08 26.1 0.0 3 298 152 505 150 511 0.71 # 20820 # 22643 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_16 - 312 AAA_10 PF12846.2 304 2.8e-06 18.2 0.0 1 1 6.7e-07 4.1e-06 17.6 0.0 2 36 143 180 142 285 0.88 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_29 - 240 AAA_10 PF12846.2 304 1.2e-05 16.1 0.2 1 1 3.4e-06 2.1e-05 15.3 0.2 3 64 5 67 4 221 0.78 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_24 - 229 AAA_10 PF12846.2 304 4e-05 14.4 0.1 1 1 1.6e-05 9.9e-05 13.1 0.1 11 114 11 127 9 226 0.58 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_16 - 312 ResIII PF04851.10 184 3.3e-06 18.3 0.0 1 1 2.2e-07 6.9e-06 17.2 0.0 5 62 128 184 122 201 0.86 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 Zot PF05707.7 193 2.2e-06 18.5 0.1 1 1 7.3e-07 2.3e-05 15.2 0.0 80 127 647 690 629 695 0.86 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_29 - 240 Epimerase PF01370.16 236 3.8e-05 14.4 0.0 1 1 2.5e-06 7.8e-05 13.4 0.0 7 123 16 122 14 147 0.80 # 20090 # 20809 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_16 - 312 DEAD PF00270.24 169 7.5e-08 23.3 0.1 1 1 4.3e-09 1.3e-07 22.5 0.1 1 64 128 192 128 233 0.78 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_30 - 608 TrwB_AAD_bind PF10412.4 386 7.6e-26 81.8 0.0 1 1 7e-26 1.1e-24 78.0 0.0 11 368 146 554 138 568 0.76 # 20820 # 22643 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_16 - 312 TrwB_AAD_bind PF10412.4 386 1.6e-07 21.4 0.3 1 1 2.2e-08 3.4e-07 20.4 0.1 8 52 135 181 130 199 0.82 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_30 - 608 T4SS-DNA_transf PF02534.9 469 1e-99 325.4 0.1 1 1 5.2e-101 1.6e-99 324.7 0.1 10 459 110 598 101 605 0.84 # 20820 # 22643 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_24 - 229 NAD_binding_5 PF07994.7 295 0.00011 13.0 0.2 1 1 4.5e-06 0.00014 12.6 0.2 124 184 148 206 91 215 0.74 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_16 - 312 Pox_A32 PF04665.7 241 0.00061 10.3 2.7 1 2 2e-05 0.00062 10.3 0.2 14 37 143 166 133 179 0.83 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 Pox_A32 PF04665.7 241 0.00061 10.3 2.7 2 2 0.036 1.1 -0.4 0.0 186 219 167 202 160 210 0.72 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 GTP_EFTU PF00009.22 188 0.00028 11.6 1.4 1 2 4.3e-05 0.0013 9.4 0.1 4 33 143 172 140 206 0.84 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 GTP_EFTU PF00009.22 188 0.00028 11.6 1.4 2 2 0.016 0.5 1.0 0.2 108 135 262 289 243 310 0.70 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_16 - 312 RNA_helicase PF00910.17 107 0.00014 13.3 0.0 1 1 4.3e-05 0.00067 11.1 0.0 1 25 145 169 145 202 0.80 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 RNA_helicase PF00910.17 107 0.0007 11.1 1.8 1 1 0.00018 0.0028 9.2 0.0 2 36 458 488 457 497 0.73 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_16 - 312 UPF0079 PF02367.12 123 0.0001 13.2 0.2 1 1 1.6e-05 0.00051 11.0 0.0 12 41 139 168 130 186 0.80 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 AAA_24 PF13479.1 213 2.8e-05 15.0 0.5 1 1 1.6e-06 5e-05 14.2 0.1 11 79 9 90 2 104 0.75 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_16 - 312 NACHT PF05729.7 166 1.7e-05 15.8 0.0 1 1 2.8e-06 4.4e-05 14.4 0.0 3 47 145 186 143 201 0.82 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_13 - 822 NACHT PF05729.7 166 0.00018 12.4 0.1 1 1 5.2e-05 0.0008 10.3 0.0 4 28 458 482 456 489 0.83 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_13 - 822 AAA_25 PF13481.1 194 1.9e-05 15.4 0.1 1 1 7.8e-06 8.1e-05 13.3 0.0 33 56 455 477 432 508 0.82 # 7507 # 9972 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 1_24 - 229 AAA_25 PF13481.1 194 6.1e-05 13.7 0.1 1 1 1.6e-05 0.00016 12.3 0.0 42 66 10 36 5 87 0.86 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 1_16 - 312 AAA_25 PF13481.1 194 0.00018 12.2 0.0 1 1 3e-05 0.00031 11.4 0.0 19 58 128 167 109 245 0.77 # 10567 # 11502 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.341 1_24 - 229 APS_kinase PF01583.15 157 7.2e-05 13.7 0.0 1 1 7.3e-06 0.00022 12.1 0.0 11 39 10 38 4 50 0.92 # 17377 # 18063 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.303 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9dc538f3-218f-418c-a0f2-33c3fbf51c11 # Target file: checkm_output/bins/pNZ_CP017870.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP017870.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9dc538f3-218f-418c-a0f2-33c3fbf51c11 checkm_output/bins/pNZ_CP017870.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:46 2020 # [ok]