# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 313 Mg_chelatase PF01078.16 207 0.00021 11.8 0.0 1 1 1.4e-05 0.00044 10.7 0.0 11 54 132 175 126 199 0.78 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 Thymidylate_kin PF02223.12 186 7.3e-06 16.7 0.2 1 2 9.2e-06 0.0003 11.5 0.0 6 44 11 51 10 62 0.77 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 229 Thymidylate_kin PF02223.12 186 7.3e-06 16.7 0.2 2 2 0.0039 0.13 2.9 0.3 133 169 187 225 150 228 0.74 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_2 - 148 FeoB_N PF02421.13 156 0.0001 12.9 1.2 1 1 4.6e-06 0.00015 12.4 1.2 13 94 56 135 47 139 0.92 # 924 # 1367 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.241 1_12 - 313 IstB_IS21 PF01695.12 178 4.4e-06 17.5 0.0 1 1 2.5e-07 7.9e-06 16.7 0.0 44 82 140 180 112 209 0.72 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 MipZ PF09140.6 261 1.3e-16 51.7 0.3 1 2 3.5e-15 5.5e-14 43.1 0.2 2 140 2 121 1 136 0.83 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 229 MipZ PF09140.6 261 1.3e-16 51.7 0.3 2 2 0.077 1.2 -0.7 0.0 127 169 131 173 123 205 0.74 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 MipZ PF09140.6 261 2.8e-05 14.6 0.0 1 1 2.4e-06 3.9e-05 14.1 0.0 5 46 7 48 3 85 0.90 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_20 - 229 YhjQ PF06564.7 244 2.5e-05 15.0 0.0 1 1 2.7e-06 4.3e-05 14.2 0.0 10 42 9 41 1 54 0.89 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 YhjQ PF06564.7 244 0.00032 11.4 0.0 1 1 3.7e-05 0.00059 10.5 0.0 7 45 9 46 3 55 0.87 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_29 - 121 SSB PF00436.20 104 5.6e-22 69.0 0.0 1 1 2.1e-23 6.7e-22 68.7 0.0 1 103 2 98 2 99 0.96 # 23966 # 24328 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 1_4 - 232 DNA_pack_N PF02500.10 284 8e-06 16.8 0.1 1 1 5e-07 1.6e-05 15.8 0.1 201 262 41 103 39 110 0.74 # 2535 # 3230 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 DUF87 PF01935.12 229 8.6e-07 20.2 4.4 1 2 0.072 0.77 0.8 0.2 101 147 135 177 74 201 0.60 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 DUF87 PF01935.12 229 8.6e-07 20.2 4.4 2 2 2.6e-07 2.7e-06 18.6 0.0 10 59 441 490 436 492 0.75 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 DUF87 PF01935.12 229 2.2e-06 18.9 0.0 1 1 4e-07 4.3e-06 18.0 0.0 25 58 145 179 126 216 0.90 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 DUF87 PF01935.12 229 6.6e-05 14.1 1.4 1 2 0.00021 0.0022 9.1 0.0 33 60 11 37 9 39 0.94 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 229 DUF87 PF01935.12 229 6.6e-05 14.1 1.4 2 2 0.0071 0.076 4.0 0.4 54 146 81 182 63 225 0.66 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 822 AAA_22 PF13401.1 131 1.5e-10 32.6 0.2 1 2 0.024 0.76 1.3 0.0 86 112 130 162 84 176 0.74 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_22 PF13401.1 131 1.5e-10 32.6 0.2 2 2 1e-08 3.3e-07 21.8 0.0 5 88 455 569 451 690 0.75 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 ATP_bind_1 PF03029.12 238 0.00011 13.0 0.2 1 1 2e-05 0.00032 11.6 0.0 1 24 148 171 148 189 0.82 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 ATP_bind_1 PF03029.12 238 0.00023 12.0 0.1 1 2 0.004 0.065 4.0 0.1 193 237 149 205 105 206 0.69 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 ATP_bind_1 PF03029.12 238 0.00023 12.0 0.1 2 2 0.0014 0.022 5.5 0.0 1 20 459 478 459 490 0.79 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_20 - 229 SRP54 PF00448.17 196 1.3e-08 25.8 0.1 1 1 1e-09 3.3e-08 24.4 0.0 11 99 11 95 2 141 0.84 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 AAA_17 PF13207.1 121 3.5e-05 15.9 0.2 1 1 9.2e-06 7.3e-05 14.9 0.2 5 78 9 113 6 215 0.69 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 313 AAA_17 PF13207.1 121 4.2e-05 15.7 1.4 1 1 1.8e-05 0.00014 14.0 1.4 2 19 146 163 145 230 0.89 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 AAA_17 PF13207.1 121 4.9e-05 15.5 0.4 1 1 3.1e-05 0.00025 13.2 0.4 9 32 11 39 10 222 0.81 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 822 AAA_17 PF13207.1 121 0.00016 13.8 2.1 1 1 0.00011 0.00089 11.4 0.0 3 19 458 474 457 561 0.87 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 MobB PF03205.9 140 0.00034 11.6 0.1 1 2 0.081 2.6 -0.9 0.0 92 110 242 259 230 275 0.79 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 MobB PF03205.9 140 0.00034 11.6 0.1 2 2 0.00012 0.0039 8.2 0.0 4 38 458 490 456 498 0.76 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_20 - 229 ArsA_ATPase PF02374.10 305 1.4e-10 31.9 0.6 1 1 1.8e-11 2.9e-10 30.9 0.6 6 109 6 110 1 217 0.86 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 ArsA_ATPase PF02374.10 305 1.6e-06 18.6 0.1 1 1 2.2e-07 3.5e-06 17.5 0.0 4 40 6 42 3 59 0.92 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 313 PhoH PF02562.11 205 4.8e-05 13.9 0.3 1 1 3e-06 9.7e-05 12.9 0.1 6 56 129 180 126 202 0.75 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 T2SE PF00437.15 272 1.5e-82 267.8 0.7 1 1 1.2e-83 1.9e-82 267.4 0.7 8 270 24 286 19 288 0.98 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 T2SE PF00437.15 272 8.6e-06 16.1 0.0 1 1 1e-06 1.6e-05 15.1 0.0 121 155 447 481 423 490 0.80 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 Zeta_toxin PF06414.7 201 1.8e-05 15.2 0.0 1 1 2e-06 3.3e-05 14.3 0.0 15 48 142 179 130 215 0.82 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 Zeta_toxin PF06414.7 201 5e-05 13.7 0.2 1 2 1.9e-05 0.0003 11.2 0.0 25 55 10 42 8 103 0.72 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 229 Zeta_toxin PF06414.7 201 5e-05 13.7 0.2 2 2 0.057 0.91 -0.2 0.0 154 188 144 178 138 191 0.80 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 822 SMC_N PF02463.14 220 0.00024 11.6 3.4 1 2 0.034 1.1 -0.3 0.1 70 125 53 108 42 118 0.67 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 SMC_N PF02463.14 220 0.00024 11.6 3.4 2 2 1e-05 0.00033 11.2 0.0 25 55 455 483 447 491 0.84 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_20 - 229 VirC1 PF07015.6 231 2.2e-13 41.0 0.1 1 1 1.2e-14 3.9e-13 40.2 0.1 4 150 3 145 1 205 0.76 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 229 Fer4_NifH PF00142.13 273 6.3e-08 23.3 0.1 1 1 1.3e-08 2.2e-07 21.6 0.0 7 54 8 53 2 92 0.74 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 Fer4_NifH PF00142.13 273 5.4e-06 17.0 0.0 1 1 5.7e-07 9.2e-06 16.2 0.0 4 74 7 75 4 92 0.77 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_9 - 822 Arch_ATPase PF01637.13 234 1.8e-05 15.8 3.6 1 2 8.2e-07 2.6e-05 15.3 0.0 23 59 457 493 455 502 0.90 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 Arch_ATPase PF01637.13 234 1.8e-05 15.8 3.6 2 2 0.057 1.8 -0.6 0.1 84 146 610 670 548 692 0.58 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_25 - 240 AAA_16 PF13191.1 185 4.7e-05 14.7 0.0 1 1 8e-06 6.4e-05 14.3 0.0 27 119 6 102 5 147 0.78 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 313 AAA_16 PF13191.1 185 6.3e-05 14.3 0.1 1 1 1.8e-05 0.00015 13.1 0.1 22 50 141 169 133 280 0.86 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 AAA_16 PF13191.1 185 0.00011 13.5 0.2 1 1 7.2e-05 0.00057 11.2 0.0 26 50 456 480 446 504 0.84 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_20 - 229 AAA_16 PF13191.1 185 0.00012 13.4 0.0 1 1 2.3e-05 0.00019 12.8 0.0 34 77 11 61 9 180 0.70 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 822 AAA_23 PF13476.1 202 9.5e-07 20.6 1.5 1 2 0.0024 0.039 5.5 0.8 102 200 90 168 14 201 0.50 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_23 PF13476.1 202 9.5e-07 20.6 1.5 2 2 5.9e-08 9.5e-07 20.6 1.5 20 44 455 479 443 626 0.75 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 AAA_23 PF13476.1 202 0.00089 10.9 5.3 1 1 5.3e-05 0.00085 11.0 2.9 18 39 142 163 125 306 0.91 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 AAA_18 PF13238.1 129 6.2e-07 21.1 1.0 1 1 4.7e-07 5e-06 18.2 0.0 8 81 11 110 9 129 0.65 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 822 AAA_18 PF13238.1 129 0.00021 12.9 2.0 1 2 0.036 0.38 2.4 0.6 11 69 95 183 95 203 0.59 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_18 PF13238.1 129 0.00021 12.9 2.0 2 2 0.00056 0.006 8.2 0.0 2 17 458 473 458 510 0.88 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 AAA_18 PF13238.1 129 0.00089 10.9 7.3 1 2 0.00036 0.0038 8.9 1.5 1 17 146 162 146 170 0.91 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 AAA_18 PF13238.1 129 0.00089 10.9 7.3 2 2 0.0066 0.071 4.8 0.1 72 113 173 210 161 225 0.81 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 CbiA PF01656.18 195 7.2e-26 82.0 0.7 1 1 1.3e-26 1.3e-25 81.2 0.7 1 176 3 161 3 193 0.74 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 CbiA PF01656.18 195 1.9e-11 35.0 0.2 1 1 2.2e-12 2.3e-11 34.7 0.2 3 48 7 50 5 185 0.75 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_9 - 822 CbiA PF01656.18 195 0.00012 12.8 0.0 1 1 3.1e-05 0.00034 11.3 0.0 8 49 463 515 457 593 0.67 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 KaiC PF06745.8 227 7.7e-06 16.4 0.0 1 1 4.7e-07 1.5e-05 15.5 0.0 12 46 136 169 114 203 0.80 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 AAA_14 PF13173.1 128 0.00088 10.5 0.0 1 5 0.055 1.8 -0.2 1.8 60 83 132 158 74 235 0.65 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_14 PF13173.1 128 0.00088 10.5 0.0 2 5 0.083 2.7 -0.7 0.0 51 85 259 303 238 310 0.64 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_14 PF13173.1 128 0.00088 10.5 0.0 3 5 2.8e-05 0.00088 10.5 0.0 5 39 457 491 455 503 0.79 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_14 PF13173.1 128 0.00088 10.5 0.0 4 5 0.0082 0.26 2.5 0.0 48 108 630 699 598 710 0.58 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_14 PF13173.1 128 0.00088 10.5 0.0 5 5 0.049 1.6 0.0 0.1 14 42 769 808 767 820 0.57 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_29 PF13555.1 62 3.9e-07 20.9 0.0 1 1 6.6e-08 1.1e-06 19.5 0.0 22 41 454 472 444 484 0.81 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 AAA_29 PF13555.1 62 1.1e-05 16.3 1.3 1 1 7.6e-07 1.2e-05 16.1 0.1 22 44 142 164 131 174 0.85 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 AAA PF00004.24 132 1.3e-05 16.7 0.4 1 3 0.0028 0.09 4.3 0.0 31 74 287 331 258 344 0.84 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA PF00004.24 132 1.3e-05 16.7 0.4 2 3 0.0019 0.06 4.9 0.0 2 21 458 477 457 500 0.80 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA PF00004.24 132 1.3e-05 16.7 0.4 3 3 0.011 0.34 2.4 0.0 49 113 635 691 630 708 0.77 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 Sigma54_activat PF00158.21 168 8.2e-05 13.4 0.0 1 1 5e-06 0.00016 12.5 0.0 14 45 135 166 124 198 0.73 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 MMR_HSR1 PF01926.18 116 0.00035 11.8 2.1 1 1 6.2e-05 0.002 9.4 2.1 2 26 146 169 145 311 0.74 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_26 - 608 TraG-D_C PF12696.2 128 1.8e-31 100.0 0.1 1 1 1.1e-32 3.4e-31 99.1 0.1 2 127 432 552 431 553 0.90 # 19801 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_20 - 229 AAA_31 PF13614.1 157 3.6e-13 41.0 0.1 1 1 6e-13 9.6e-12 36.4 0.0 2 124 2 120 1 120 0.88 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 AAA_31 PF13614.1 157 1.3e-06 19.7 0.1 1 2 8.8e-07 1.4e-05 16.4 0.0 1 79 3 75 3 110 0.77 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_25 - 240 AAA_31 PF13614.1 157 1.3e-06 19.7 0.1 2 2 0.039 0.63 1.3 0.1 25 63 175 214 173 226 0.76 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 313 AAA_33 PF13671.1 143 0.00025 12.3 1.1 1 1 2.1e-05 0.00068 10.8 1.1 2 20 146 164 146 280 0.81 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 AAA_30 PF13604.1 196 3.2e-06 18.1 0.0 1 1 2.1e-07 6.6e-06 17.1 0.0 2 51 128 178 127 209 0.81 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 FtsK_SpoIIIE PF01580.13 205 9.4e-10 29.5 0.0 1 1 1.2e-10 1.9e-09 28.6 0.0 34 93 139 197 124 218 0.79 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 FtsK_SpoIIIE PF01580.13 205 7.1e-07 20.1 0.0 1 1 1.2e-07 1.9e-06 18.7 0.0 33 64 447 480 428 498 0.77 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 ABC_tran PF00005.22 137 1.4e-06 20.0 0.2 1 1 5.6e-07 9e-06 17.3 0.0 4 37 447 480 445 597 0.81 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_12 - 313 ABC_tran PF00005.22 137 7.3e-05 14.4 0.6 1 1 1e-05 0.00016 13.3 0.4 8 37 140 169 136 233 0.82 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 AAA_19 PF13245.1 76 5.9e-06 17.3 0.0 1 1 8.4e-07 1.3e-05 16.2 0.0 2 48 135 179 134 197 0.79 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 AAA_19 PF13245.1 76 1.8e-05 15.8 0.0 1 1 2.7e-06 4.3e-05 14.6 0.0 20 48 11 35 3 48 0.89 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_9 - 822 AAA_10 PF12846.2 304 3.1e-36 116.6 0.2 1 2 0.0085 0.055 4.1 0.1 84 185 117 279 78 286 0.56 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_10 PF12846.2 304 3.1e-36 116.6 0.2 2 2 4.6e-35 2.9e-34 110.1 0.0 2 290 455 716 454 725 0.87 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_26 - 608 AAA_10 PF12846.2 304 1.9e-08 25.3 0.0 1 1 6e-09 3.8e-08 24.3 0.0 3 298 152 505 150 511 0.69 # 19801 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 313 AAA_10 PF12846.2 304 2.4e-06 18.4 0.0 1 1 5.6e-07 3.6e-06 17.8 0.0 2 37 144 182 143 292 0.82 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_25 - 240 AAA_10 PF12846.2 304 1.2e-05 16.1 0.2 1 1 3.4e-06 2.2e-05 15.3 0.2 3 64 5 67 4 221 0.78 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_20 - 229 AAA_10 PF12846.2 304 4e-05 14.4 0.1 1 1 1e-05 6.6e-05 13.7 0.1 11 115 11 128 9 226 0.60 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 313 ResIII PF04851.10 184 3.2e-06 18.4 0.1 1 1 2.1e-07 6.7e-06 17.3 0.1 5 63 129 186 123 207 0.85 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 Zot PF05707.7 193 3.3e-06 18.0 0.2 1 2 0.035 1.1 -0.1 0.0 80 127 273 325 244 354 0.68 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 Zot PF05707.7 193 3.3e-06 18.0 0.2 2 2 2.1e-06 6.7e-05 13.7 0.0 81 127 648 690 629 694 0.83 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_20 - 229 DUF2075 PF09848.4 352 0.00019 11.7 0.2 1 2 2e-05 0.00064 10.0 0.0 5 90 5 86 2 130 0.79 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_20 - 229 DUF2075 PF09848.4 352 0.00019 11.7 0.2 2 2 0.03 0.95 -0.5 0.1 200 225 152 177 150 210 0.75 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_25 - 240 Epimerase PF01370.16 236 4e-05 14.4 0.0 1 1 2.5e-06 8.1e-05 13.4 0.0 7 123 16 122 14 147 0.80 # 19071 # 19790 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.290 1_12 - 313 DEAD PF00270.24 169 6.9e-08 23.4 0.1 1 1 3.7e-09 1.2e-07 22.7 0.1 1 64 129 193 129 235 0.77 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_26 - 608 TrwB_AAD_bind PF10412.4 386 8.4e-27 84.9 0.0 1 1 8.2e-27 1.3e-25 81.0 0.0 12 368 147 554 138 568 0.75 # 19801 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_12 - 313 TrwB_AAD_bind PF10412.4 386 1.5e-07 21.5 0.2 1 1 2.2e-08 3.5e-07 20.4 0.1 8 52 136 182 131 200 0.82 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_21 - 132 Sigma54_activ_2 PF14532.1 138 8.5e-05 13.9 0.2 1 1 3.9e-06 0.00012 13.4 0.2 74 119 60 104 45 111 0.86 # 17135 # 17530 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.247 1_26 - 608 T4SS-DNA_transf PF02534.9 469 5.2e-100 326.4 0.1 1 1 2.4e-101 7.5e-100 325.9 0.1 10 459 110 598 101 605 0.83 # 19801 # 21624 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.319 1_20 - 229 NAD_binding_5 PF07994.7 295 0.0002 12.2 0.1 1 1 7.9e-06 0.00025 11.8 0.1 124 184 148 206 91 215 0.74 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 313 Pox_A32 PF04665.7 241 0.00061 10.4 2.5 1 2 2.1e-05 0.00068 10.2 0.2 15 37 145 167 135 179 0.83 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 Pox_A32 PF04665.7 241 0.00061 10.4 2.5 2 2 0.028 0.88 0.0 0.0 185 220 167 204 160 212 0.73 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 GTP_EFTU PF00009.22 188 0.00041 11.1 1.8 1 2 4.6e-05 0.0015 9.3 0.1 4 33 144 173 141 202 0.83 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 GTP_EFTU PF00009.22 188 0.00041 11.1 1.8 2 2 0.016 0.5 1.0 0.2 107 135 262 290 244 311 0.71 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 RNA_helicase PF00910.17 107 0.00014 13.4 0.1 1 1 2.3e-05 0.00075 11.0 0.1 1 25 146 170 146 200 0.80 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_12 - 313 UPF0079 PF02367.12 123 0.00011 13.2 0.2 1 1 1.7e-05 0.00054 10.9 0.0 12 41 140 169 131 186 0.80 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 AAA_24 PF13479.1 213 3.6e-05 14.7 0.4 1 1 2.2e-06 7.1e-05 13.7 0.1 11 79 9 90 3 104 0.74 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 313 NACHT PF05729.7 166 1.9e-05 15.7 0.0 1 1 2.8e-06 4.5e-05 14.4 0.0 3 47 146 187 144 203 0.82 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_9 - 822 NACHT PF05729.7 166 0.0002 12.3 0.0 1 1 5.2e-05 0.00083 10.3 0.0 4 28 458 482 456 489 0.83 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_9 - 822 AAA_25 PF13481.1 194 2.6e-05 15.0 0.0 1 1 7.2e-06 7.6e-05 13.4 0.0 33 57 455 478 432 539 0.85 # 6192 # 8657 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.307 1_20 - 229 AAA_25 PF13481.1 194 6.2e-05 13.7 0.1 1 1 1.6e-05 0.00017 12.3 0.0 42 66 10 36 5 87 0.86 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_12 - 313 AAA_25 PF13481.1 194 0.00021 12.0 0.0 1 1 4.2e-05 0.00045 10.9 0.0 19 54 129 164 110 216 0.80 # 9252 # 10190 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.345 1_20 - 229 APS_kinase PF01583.15 157 7.5e-05 13.7 0.0 1 1 7e-06 0.00022 12.2 0.0 11 39 10 38 3 50 0.91 # 16357 # 17043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e00f1a8e-76c2-4e27-a601-a303e4b205e8 # Target file: checkm_output/bins/pNZ_CP017867.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP017867.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e00f1a8e-76c2-4e27-a601-a303e4b205e8 checkm_output/bins/pNZ_CP017867.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:46 2020 # [ok]