# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 5_7 - 600 IstB_IS21 PF01695.12 178 2.1e-06 20.2 0.0 1 2 1.5e-06 0.00016 14.1 0.0 46 85 32 71 27 84 0.89 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 5_7 - 600 IstB_IS21 PF01695.12 178 2.1e-06 20.2 0.0 2 2 0.0038 0.39 3.0 0.0 96 140 108 160 98 181 0.73 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 2_5 - 1176 ATP_bind_1 PF03029.12 238 0.00023 13.7 0.1 1 2 0.0079 0.82 2.1 0.0 1 14 129 142 129 148 0.91 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_5 - 1176 ATP_bind_1 PF03029.12 238 0.00023 13.7 0.1 2 2 6.8e-05 0.007 8.8 0.1 133 180 251 297 217 362 0.62 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_5 - 1176 AAA_17 PF13207.1 121 0.0068 10.2 5.1 1 1 7.8e-05 0.0081 10.0 0.4 1 19 126 144 126 270 0.50 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_5 - 1176 Miro PF08477.8 119 0.0001 15.7 0.2 1 1 1.8e-05 0.0018 11.7 0.2 2 49 127 175 126 285 0.70 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 5_10 - 187 CbiA PF01656.18 195 1.2e-07 24.2 0.1 1 2 1.4e-06 0.00015 14.2 0.0 1 24 3 26 3 30 0.92 # 4526 # 5086 # -1 # ID=5_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 5_10 - 187 CbiA PF01656.18 195 1.2e-07 24.2 0.1 2 2 8.1e-05 0.0084 8.4 0.0 95 181 54 134 29 151 0.69 # 4526 # 5086 # -1 # ID=5_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 5_7 - 600 KaiC PF06745.8 227 8.7e-06 17.9 0.1 1 2 4.7e-07 4.8e-05 15.5 0.0 16 172 30 183 24 215 0.69 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 5_7 - 600 KaiC PF06745.8 227 8.7e-06 17.9 0.1 2 2 0.081 8.3 -1.7 0.0 133 156 329 352 321 358 0.83 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 2_5 - 1176 AAA_29 PF13555.1 62 0.00019 13.9 0.0 1 2 1.9e-05 0.002 10.7 0.0 16 40 114 141 110 143 0.72 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_5 - 1176 AAA_29 PF13555.1 62 0.00019 13.9 0.0 2 2 0.063 6.5 -0.6 0.0 24 38 841 856 831 863 0.78 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 5_7 - 600 AAA PF00004.24 132 0.00051 13.2 1.0 1 2 5.9e-05 0.0061 9.7 0.0 2 105 37 166 36 169 0.58 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 5_7 - 600 AAA PF00004.24 132 0.00051 13.2 1.0 2 2 0.051 5.3 0.2 0.0 57 74 417 436 384 457 0.76 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 2_5 - 1176 MMR_HSR1 PF01926.18 116 2.4e-05 17.3 0.1 1 1 9.5e-07 9.8e-05 15.3 0.1 2 105 127 266 126 283 0.61 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_5 - 1176 DUF258 PF03193.11 161 9.6e-06 17.8 0.0 1 1 2.8e-07 2.9e-05 16.3 0.0 24 96 110 182 89 199 0.73 # 5826 # 9353 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 5_7 - 600 DnaB_C PF03796.10 259 1.1e-05 17.4 0.0 1 2 1.5e-06 0.00015 13.6 0.0 13 111 27 130 23 135 0.81 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 5_7 - 600 DnaB_C PF03796.10 259 1.1e-05 17.4 0.0 2 2 0.0022 0.23 3.2 0.0 117 185 108 177 96 180 0.77 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 1_8 - 116 AAA_27 PF13514.1 1111 5.5e-05 13.9 0.1 1 1 6.2e-07 6.4e-05 13.7 0.1 705 768 21 85 18 101 0.91 # 4449 # 4796 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.236 3_11 - 260 RRF PF01765.14 165 0.004 9.6 6.3 1 2 4e-05 0.0041 9.5 0.2 128 155 165 192 155 199 0.84 # 9859 # 10638 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 3_11 - 260 RRF PF01765.14 165 0.004 9.6 6.3 2 2 0.0068 0.7 2.3 1.4 122 149 215 242 207 256 0.77 # 9859 # 10638 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 11_3 - 104 Ribosomal_S2 PF00318.15 211 5.4e-05 15.4 1.3 1 1 6.3e-07 6.5e-05 15.1 1.3 106 158 22 90 5 97 0.78 # 315 # 626 # -1 # ID=11_3;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=8bp;gc_cont=0.269 5_7 - 600 AAA_25 PF13481.1 194 1.2e-21 69.9 0.0 1 1 2.2e-23 2.3e-21 69.0 0.0 30 193 30 175 27 176 0.89 # 2131 # 3930 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.268 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/163e2c37-90f9-4d66-b243-9b15de8e8564 # Target file: checkm_output/bins/pNZ_CP014345.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP014345.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/163e2c37-90f9-4d66-b243-9b15de8e8564 checkm_output/bins/pNZ_CP014345.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:34 2020 # [ok]