# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 598 IstB_IS21 PF01695.12 178 8.1e-07 20.0 0.0 1 2 1.5e-06 4.9e-05 14.2 0.0 46 85 32 71 25 84 0.89 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_28 - 598 IstB_IS21 PF01695.12 178 8.1e-07 20.0 0.0 2 2 0.005 0.17 2.6 0.1 96 139 108 159 98 182 0.71 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_18 - 142 SSB PF00436.20 104 2.7e-28 89.3 0.1 1 1 1e-29 3.5e-28 89.0 0.1 1 102 1 102 1 104 0.98 # 14947 # 15372 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_10 - 331 DUF87 PF01935.12 229 3.7e-05 15.0 0.1 1 1 4.5e-06 7.6e-05 14.0 0.1 28 48 165 185 157 193 0.84 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_21 - 923 DUF87 PF01935.12 229 0.00049 11.3 7.1 1 2 0.00015 0.0025 9.0 0.0 26 49 548 571 539 582 0.84 # 16537 # 19305 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_21 - 923 DUF87 PF01935.12 229 0.00049 11.3 7.1 2 2 0.011 0.19 2.8 0.1 101 165 639 700 633 732 0.74 # 16537 # 19305 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_10 - 331 Septin PF00735.13 281 2.5e-05 14.7 0.0 1 1 1.2e-06 4e-05 14.1 0.0 6 29 162 185 158 209 0.80 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_22 PF13401.1 131 6.4e-06 17.7 0.0 1 1 3.9e-07 1.3e-05 16.7 0.0 4 41 160 208 156 256 0.70 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 ATP_bind_1 PF03029.12 238 7.8e-05 13.6 0.0 1 1 3.7e-06 0.00013 13.0 0.0 1 23 165 187 165 193 0.87 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 PRK PF00485.13 194 0.00021 12.3 0.0 1 1 1.2e-05 0.00039 11.4 0.0 2 24 163 185 162 221 0.83 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_17 PF13207.1 121 3.1e-06 19.5 0.1 1 1 2.2e-07 7.6e-06 18.2 0.1 2 49 163 207 162 303 0.82 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 MobB PF03205.9 140 2e-05 15.7 0.6 1 2 2.2e-06 7.6e-05 13.8 0.0 3 27 163 187 161 199 0.81 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 MobB PF03205.9 140 2e-05 15.7 0.6 2 2 0.074 2.5 -0.8 0.1 20 44 296 320 294 321 0.80 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 T2SE PF00437.15 272 1.1e-63 206.0 0.0 1 1 3.8e-65 1.3e-63 205.8 0.0 5 269 13 312 9 315 0.94 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 Zeta_toxin PF06414.7 201 4.2e-05 14.1 0.0 1 1 2e-06 7e-05 13.4 0.0 17 49 161 194 146 218 0.85 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 Arch_ATPase PF01637.13 234 8.9e-05 13.6 0.0 1 1 4.1e-06 0.00014 13.0 0.0 23 81 163 225 151 273 0.83 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_16 PF13191.1 185 1.6e-05 16.3 0.0 1 1 6.4e-07 2.2e-05 15.9 0.0 24 81 160 234 144 305 0.76 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_23 PF13476.1 202 0.0013 10.4 6.5 1 2 0.09 3 -0.6 0.3 106 106 110 110 7 158 0.50 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_23 PF13476.1 202 0.0013 10.4 6.5 2 2 8.7e-06 0.0003 12.5 1.5 22 37 163 178 160 184 0.89 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_18 PF13238.1 129 0.0001 14.1 1.3 1 1 4.9e-06 0.00017 13.3 0.0 1 18 163 180 163 227 0.76 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_28 - 598 KaiC PF06745.8 227 1.2e-05 15.8 0.1 1 2 1.8e-06 6.3e-05 13.5 0.0 16 71 30 84 23 214 0.73 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_28 - 598 KaiC PF06745.8 227 1.2e-05 15.8 0.1 2 2 0.081 2.7 -1.7 0.0 133 156 329 352 321 358 0.83 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_10 - 331 AAA_14 PF13173.1 128 1.6e-05 16.2 0.1 1 1 2.2e-06 7.6e-05 14.0 0.0 2 54 160 211 159 254 0.75 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 GvpD PF07088.6 484 0.00016 11.4 0.0 1 1 6.1e-06 0.00021 11.0 0.0 8 42 158 192 150 258 0.83 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_29 PF13555.1 62 1.6e-05 15.8 0.0 1 1 1.1e-06 3.7e-05 14.6 0.0 22 40 159 177 142 184 0.85 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 Sigma54_activat PF00158.21 168 3.4e-05 14.8 0.0 1 1 2.1e-06 7.3e-05 13.7 0.0 11 43 149 181 142 198 0.84 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_9 - 604 TraG-D_C PF12696.2 128 1e-28 91.2 0.0 1 2 1.9e-29 6.3e-28 88.6 0.0 2 127 406 528 405 529 0.89 # 7006 # 8817 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_9 - 604 TraG-D_C PF12696.2 128 1e-28 91.2 0.0 2 2 0.069 2.3 -0.5 0.0 52 70 580 601 560 603 0.74 # 7006 # 8817 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_10 - 331 NTPase_1 PF03266.10 168 0.00024 12.2 0.1 1 1 1.3e-05 0.00045 11.3 0.1 1 23 162 184 162 192 0.88 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_28 - 598 DnaB_C PF03796.10 259 8e-06 16.2 0.0 1 2 8.4e-07 2.9e-05 14.4 0.0 13 112 27 131 21 156 0.81 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_28 - 598 DnaB_C PF03796.10 259 8e-06 16.2 0.0 2 2 0.015 0.51 0.5 0.0 122 185 113 177 98 179 0.69 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_10 - 331 FtsK_SpoIIIE PF01580.13 205 5.4e-08 23.9 0.0 1 1 5.4e-09 9.1e-08 23.1 0.0 39 59 157 181 132 187 0.81 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_21 - 923 FtsK_SpoIIIE PF01580.13 205 3.3e-05 14.8 0.0 1 1 4.3e-06 7.4e-05 13.7 0.0 39 63 539 570 514 576 0.74 # 16537 # 19305 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_32 - 70 RBD PF02196.10 71 0.00019 12.6 0.0 1 1 7.6e-06 0.00026 12.2 0.0 22 49 34 62 32 65 0.82 # 26002 # 26211 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_10 - 331 ABC_tran PF00005.22 137 1.1e-07 23.6 0.0 1 1 6.9e-09 2.3e-07 22.6 0.0 4 50 153 200 151 226 0.84 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_21 - 923 AAA_10 PF12846.2 304 1.3e-39 127.7 1.4 1 1 3.2e-40 3.6e-39 126.3 0.3 2 297 546 839 545 845 0.84 # 16537 # 19305 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.290 1_10 - 331 AAA_10 PF12846.2 304 1.9e-06 18.8 0.0 1 1 2e-07 2.3e-06 18.6 0.0 2 37 161 196 160 323 0.79 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_9 - 604 AAA_10 PF12846.2 304 2.2e-05 15.3 0.0 1 1 3e-06 3.4e-05 14.7 0.0 25 302 147 490 126 491 0.70 # 7006 # 8817 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_10 - 331 ResIII PF04851.10 184 2.5e-05 15.5 0.0 1 1 1.5e-06 5e-05 14.6 0.0 3 64 145 201 140 237 0.70 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 DEAD PF00270.24 169 3.1e-06 18.1 0.0 1 1 1.7e-07 5.9e-06 17.2 0.0 3 69 149 212 147 243 0.69 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_9 - 604 TrwB_AAD_bind PF10412.4 386 5.8e-20 62.5 0.0 1 2 3.8e-05 0.00065 9.7 0.0 42 125 150 245 121 290 0.72 # 7006 # 8817 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_9 - 604 TrwB_AAD_bind PF10412.4 386 5.8e-20 62.5 0.0 2 2 1.2e-17 2.1e-16 50.8 0.0 185 380 345 542 307 544 0.84 # 7006 # 8817 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_10 - 331 TrwB_AAD_bind PF10412.4 386 6.8e-05 12.9 0.0 1 1 5.8e-06 9.9e-05 12.4 0.0 16 42 161 187 153 217 0.85 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_9 - 604 T4SS-DNA_transf PF02534.9 469 1.9e-107 351.0 0.1 1 1 8.5e-109 2.9e-107 350.4 0.1 2 461 93 565 82 571 0.84 # 7006 # 8817 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.299 1_10 - 331 RNA_helicase PF00910.17 107 6.9e-05 14.4 0.0 1 1 5.8e-06 0.0002 13.0 0.0 1 23 163 185 163 224 0.79 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 UPF0079 PF02367.12 123 9.6e-06 16.7 0.0 1 1 5.3e-07 1.8e-05 15.8 0.0 8 42 153 187 147 205 0.85 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 AAA_24 PF13479.1 213 8.8e-05 13.5 0.0 1 1 4.9e-06 0.00017 12.6 0.0 5 33 162 188 159 217 0.84 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_10 - 331 NACHT PF05729.7 166 1.2e-05 16.4 0.0 1 1 5.9e-07 2e-05 15.7 0.0 3 22 163 182 161 188 0.89 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 1_28 - 598 AAA_25 PF13481.1 194 3.3e-22 70.2 0.0 1 1 3.5e-23 6e-22 69.3 0.0 30 193 30 175 27 176 0.89 # 21850 # 23643 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.262 1_10 - 331 AAA_25 PF13481.1 194 8.7e-05 13.3 0.0 1 1 7.7e-06 0.00013 12.8 0.0 26 56 154 183 128 200 0.76 # 8818 # 9810 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.320 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3e61351a-8d50-4999-89dd-210032c57a28 # Target file: checkm_output/bins/pNZ_CP013735.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP013735.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3e61351a-8d50-4999-89dd-210032c57a28 checkm_output/bins/pNZ_CP013735.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:33 2020 # [ok]