# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_63 - 459 cobW PF02492.14 178 0.00071 12.1 0.1 1 1 1.9e-05 0.0022 10.5 0.0 3 33 52 83 50 94 0.82 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_53 - 176 SSB PF00436.20 104 4.1e-32 103.3 0.2 1 1 6.1e-34 7e-32 102.6 0.2 2 104 3 105 2 105 0.99 # 29799 # 30326 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_95 - 485 UvrD_C_2 PF13538.1 104 6.8e-11 35.4 0.0 1 1 2.5e-12 2.9e-10 33.4 0.0 46 103 378 463 337 463 0.69 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_63 - 459 DUF87 PF01935.12 229 4.1e-06 19.8 0.3 1 1 4.3e-07 4.9e-05 16.3 0.3 24 69 50 102 43 292 0.53 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_63 - 459 AAA_22 PF13401.1 131 0.0001 15.6 0.0 1 1 5e-06 0.00029 14.1 0.0 4 28 49 73 44 111 0.79 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_72 - 390 AAA_22 PF13401.1 131 0.0012 12.1 0.3 1 2 0.098 5.6 0.2 0.2 83 101 115 136 39 156 0.61 # 42457 # 43626 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_72 - 390 AAA_22 PF13401.1 131 0.0012 12.1 0.3 2 2 0.00044 0.025 7.8 0.0 5 32 170 197 166 339 0.78 # 42457 # 43626 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_40 - 292 N6_N4_Mtase PF01555.13 231 1.5e-07 24.2 0.4 1 2 6.1e-05 0.0069 8.9 0.0 197 223 41 67 30 69 0.87 # 23030 # 23905 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_40 - 292 N6_N4_Mtase PF01555.13 231 1.5e-07 24.2 0.4 2 2 2.4e-06 0.00027 13.5 0.2 3 116 86 228 84 287 0.64 # 23030 # 23905 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_95 - 485 PhoH PF02562.11 205 3.9e-06 19.3 0.4 1 2 0.00031 0.035 6.4 0.0 6 34 4 31 1 54 0.83 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 PhoH PF02562.11 205 3.9e-06 19.3 0.4 2 2 1.7e-05 0.0019 10.5 0.0 122 181 195 248 190 268 0.74 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_63 - 459 Zeta_toxin PF06414.7 201 9.2e-05 14.7 0.0 1 1 1.7e-06 0.00019 13.7 0.0 8 50 42 85 35 109 0.84 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_63 - 459 Arch_ATPase PF01637.13 234 2e-05 17.4 0.0 1 1 7e-07 7.9e-05 15.5 0.0 15 57 44 86 35 166 0.85 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_63 - 459 AAA_16 PF13191.1 185 3.6e-05 16.9 0.0 1 1 7.3e-07 8.3e-05 15.7 0.0 18 51 43 76 34 105 0.79 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_47 - 134 RNA_pol_Rpb8 PF03870.10 138 0.00015 15.0 0.0 1 1 2.9e-06 0.00033 14.0 0.0 31 70 58 97 45 113 0.78 # 26443 # 26844 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.346 1_72 - 390 KaiC PF06745.8 227 3.3e-05 16.2 0.0 1 1 5.8e-07 6.6e-05 15.2 0.0 16 180 166 332 159 355 0.73 # 42457 # 43626 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 1_63 - 459 AAA_14 PF13173.1 128 9.2e-05 15.5 0.0 1 2 0.0001 0.012 8.6 0.0 5 37 52 85 48 148 0.76 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_63 - 459 AAA_14 PF13173.1 128 9.2e-05 15.5 0.0 2 2 0.0029 0.33 4.0 0.0 61 114 308 358 254 366 0.72 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_16 - 82 tRNA-synt_1g PF09334.6 391 8.7e-05 14.3 0.7 1 1 8.7e-07 9.9e-05 14.1 0.7 135 176 9 50 2 58 0.87 # 11458 # 11703 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.313 1_95 - 485 UvrD_C PF13361.1 351 7.5e-14 44.9 2.2 1 3 0.053 6.1 -0.8 0.0 208 269 60 139 13 163 0.57 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 UvrD_C PF13361.1 351 7.5e-14 44.9 2.2 2 3 0.044 5 -0.5 0.0 2 44 252 292 251 318 0.68 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 UvrD_C PF13361.1 351 7.5e-14 44.9 2.2 3 3 8.4e-15 9.6e-13 41.3 2.1 171 346 285 463 281 465 0.62 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_63 - 459 TraG-D_C PF12696.2 128 7.2e-13 41.6 0.1 1 1 2.4e-14 1.4e-12 40.7 0.1 1 83 309 390 309 422 0.85 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_1 - 831 TraG-D_C PF12696.2 128 5.9e-05 16.1 0.0 1 1 2.8e-06 0.00016 14.6 0.0 1 69 664 740 664 749 0.75 # 1 # 2493 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_40 - 292 Methyltransf_26 PF13659.1 117 7.7e-05 15.8 0.1 1 1 3.9e-05 0.0045 10.1 0.1 65 102 79 126 36 133 0.70 # 23030 # 23905 # -1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_95 - 485 AAA_30 PF13604.1 196 5.3e-07 22.5 0.1 1 2 5.6e-08 6.4e-06 18.9 0.0 2 67 3 63 2 97 0.75 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 AAA_30 PF13604.1 196 5.3e-07 22.5 0.1 2 2 0.039 4.5 -0.1 0.0 97 132 196 227 171 258 0.79 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_63 - 459 FtsK_SpoIIIE PF01580.13 205 6e-05 15.7 0.0 1 1 9.9e-07 0.00011 14.8 0.0 39 80 45 87 17 104 0.80 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_95 - 485 AAA_19 PF13245.1 76 4.6e-07 22.7 0.0 1 1 8.2e-09 9.4e-07 21.7 0.0 11 75 17 77 9 78 0.85 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_1 - 831 AAA_10 PF12846.2 304 1.5e-48 158.8 1.1 1 1 5.1e-50 2.9e-48 157.9 1.1 1 301 453 753 453 756 0.91 # 1 # 2493 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_63 - 459 AAA_10 PF12846.2 304 2.8e-23 75.8 0.2 1 1 6.4e-25 3.6e-23 75.5 0.2 2 301 50 387 49 390 0.74 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_95 - 485 ResIII PF04851.10 184 6.8e-05 15.8 1.4 1 3 5.8e-06 0.00066 12.6 0.0 28 93 19 90 1 113 0.76 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 ResIII PF04851.10 184 6.8e-05 15.8 1.4 2 3 0.076 8.7 -0.8 0.0 137 155 183 201 118 205 0.75 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 ResIII PF04851.10 184 6.8e-05 15.8 1.4 3 3 0.028 3.2 0.6 0.1 87 121 378 412 350 445 0.69 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_1 - 831 Zot PF05707.7 193 2.3e-05 17.0 0.0 1 1 4.7e-07 5.3e-05 15.8 0.0 83 129 667 710 653 714 0.87 # 1 # 2493 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_95 - 485 Viral_helicase1 PF01443.13 234 7.1e-11 35.1 0.8 1 3 0.00093 0.11 5.1 0.0 2 23 20 44 19 82 0.70 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 Viral_helicase1 PF01443.13 234 7.1e-11 35.1 0.8 2 3 3.1e-07 3.6e-05 16.4 0.0 45 141 176 265 157 312 0.75 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 Viral_helicase1 PF01443.13 234 7.1e-11 35.1 0.8 3 3 2.6e-05 0.003 10.2 0.0 183 231 395 462 309 464 0.74 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_63 - 459 DUF853 PF05872.7 504 2.9e-05 15.6 0.0 1 1 4.4e-07 5e-05 14.8 0.0 16 71 44 99 29 119 0.77 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_63 - 459 TrwB_AAD_bind PF10412.4 386 3.5e-21 68.3 0.0 1 2 6.3e-11 3.6e-09 28.7 0.0 12 55 46 89 36 232 0.84 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_63 - 459 TrwB_AAD_bind PF10412.4 386 3.5e-21 68.3 0.0 2 2 1.2e-13 6.6e-12 37.7 0.0 215 326 280 390 254 435 0.78 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_1 - 831 TrwB_AAD_bind PF10412.4 386 2.9e-09 29.0 0.0 1 2 5.3e-07 3e-05 15.8 0.0 17 78 455 525 440 618 0.77 # 1 # 2493 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_1 - 831 TrwB_AAD_bind PF10412.4 386 2.9e-09 29.0 0.0 2 2 2e-05 0.0011 10.6 0.0 219 285 639 710 620 737 0.82 # 1 # 2493 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.333 1_95 - 485 AAA_11 PF13086.1 236 8.3e-05 15.3 0.4 1 3 0.0013 0.14 4.7 0.0 19 63 18 52 3 90 0.74 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 AAA_11 PF13086.1 236 8.3e-05 15.3 0.4 2 3 0.00019 0.022 7.4 0.0 186 228 186 227 174 227 0.87 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 AAA_11 PF13086.1 236 8.3e-05 15.3 0.4 3 3 0.081 9.2 -1.2 0.2 101 134 364 412 350 457 0.56 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_63 - 459 T4SS-DNA_transf PF02534.9 469 1.3e-13 43.4 0.6 1 1 1.6e-15 1.8e-13 42.9 0.6 44 385 35 388 5 421 0.79 # 36517 # 37893 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_32 - 351 AAA_32 PF13654.1 509 0.0032 9.2 15.0 1 2 0.00045 0.051 5.2 4.4 146 235 47 137 28 173 0.78 # 17666 # 18718 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_32 - 351 AAA_32 PF13654.1 509 0.0032 9.2 15.0 2 2 2.2e-05 0.0025 9.5 3.1 122 195 178 251 168 273 0.86 # 17666 # 18718 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_45 - 78 Methyltransf_23 PF13489.1 161 0.00018 14.3 0.0 1 1 1.7e-06 0.00019 14.2 0.0 8 46 25 62 11 74 0.83 # 25137 # 25370 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_19 - 69 RNA_pol_Rpb1_1 PF04997.7 337 6.5e-05 15.4 0.7 1 1 5.8e-07 6.6e-05 15.3 0.7 172 227 7 62 1 65 0.82 # 13278 # 13484 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 1_66 - 230 S1 PF00575.18 74 0.00086 12.5 1.5 1 2 2.7e-05 0.0031 10.7 0.1 3 60 100 154 98 168 0.77 # 39304 # 39993 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.309 1_66 - 230 S1 PF00575.18 74 0.00086 12.5 1.5 2 2 0.087 9.9 -0.5 0.0 52 73 197 218 196 219 0.86 # 39304 # 39993 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.309 1_16 - 82 Terminase_GpA PF05876.7 557 0.00049 11.5 0.5 1 1 5e-06 0.00057 11.3 0.5 202 240 12 51 8 61 0.85 # 11458 # 11703 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.313 1_95 - 485 UvrD-helicase PF00580.16 315 2.7e-15 49.5 7.9 1 2 2.1e-12 2.4e-10 33.2 2.3 254 303 190 236 3 240 0.66 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_95 - 485 UvrD-helicase PF00580.16 315 2.7e-15 49.5 7.9 2 2 0.049 5.6 -0.8 0.3 172 199 375 402 287 479 0.64 # 58026 # 59480 # -1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.335 1_72 - 390 AAA_25 PF13481.1 194 2.5e-20 65.8 0.0 1 1 3.3e-22 3.7e-20 65.2 0.0 22 193 156 319 140 320 0.79 # 42457 # 43626 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.279 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7bcf81a1-3be8-40a9-80a6-ff2743b06db0 # Target file: checkm_output/bins/pNZ_CP009044.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP009044.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7bcf81a1-3be8-40a9-80a6-ff2743b06db0 checkm_output/bins/pNZ_CP009044.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:29 2020 # [ok]