# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 334 Mg_chelatase PF01078.16 207 0.00011 13.4 0.0 1 1 8e-06 0.00042 11.5 0.0 18 60 157 197 140 244 0.77 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_15 - 154 DUF2122 PF09895.4 106 0.0003 13.1 0.3 1 1 8.9e-06 0.00047 12.4 0.3 23 84 37 101 30 111 0.80 # 10369 # 10830 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.255 1_19 - 334 cobW PF02492.14 178 0.00035 12.1 0.0 1 1 1.1e-05 0.00061 11.3 0.0 3 33 164 194 162 207 0.75 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 IstB_IS21 PF01695.12 178 0.00014 13.3 0.0 1 1 1.5e-05 0.00079 10.9 0.0 41 63 155 177 123 185 0.83 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 MipZ PF09140.6 261 3.3e-16 51.1 0.4 1 1 1.3e-16 7.1e-15 46.7 0.4 2 140 2 122 1 132 0.80 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_28 - 137 SSB PF00436.20 104 1.8e-20 64.9 0.1 1 1 4.4e-22 2.4e-20 64.4 0.1 1 104 1 103 1 103 0.95 # 22132 # 22542 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_19 - 334 DUF87 PF01935.12 229 9.4e-05 14.3 0.0 1 1 1.1e-05 0.00028 12.7 0.0 28 47 166 185 159 195 0.83 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_11 - 925 DUF87 PF01935.12 229 0.00061 11.6 0.0 1 1 2.3e-05 0.00061 11.6 0.0 27 50 551 577 548 599 0.79 # 4688 # 7462 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_19 - 334 AAA_22 PF13401.1 131 2.6e-05 16.4 0.1 1 1 1.4e-06 7.2e-05 15.0 0.1 3 38 160 206 158 312 0.82 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 ATP_bind_1 PF03029.12 238 1.3e-05 16.8 0.0 1 1 5.9e-07 3.1e-05 15.6 0.0 1 25 166 190 166 196 0.88 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 PRK PF00485.13 194 0.00018 13.1 0.0 1 1 6.6e-06 0.00035 12.2 0.0 2 28 164 190 163 226 0.76 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 SRP54 PF00448.17 196 5e-07 21.3 0.3 1 1 2.9e-08 1.6e-06 19.7 0.2 11 100 11 97 8 127 0.75 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 3_5 - 344 AAA_15 PF13175.1 415 4.2e-14 44.3 36.4 1 3 4.7e-08 2.5e-06 18.7 18.5 1 157 2 155 2 182 0.67 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 3_5 - 344 AAA_15 PF13175.1 415 4.2e-14 44.3 36.4 2 3 2.9e-12 1.6e-10 32.6 8.9 282 415 145 277 136 277 0.73 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 3_5 - 344 AAA_15 PF13175.1 415 4.2e-14 44.3 36.4 3 3 0.044 2.3 -1.0 1.1 17 35 295 316 281 327 0.61 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_19 - 334 AAA_17 PF13207.1 121 1.7e-05 17.7 0.0 1 2 0.044 2.3 1.1 0.0 73 110 113 147 32 153 0.64 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 AAA_17 PF13207.1 121 1.7e-05 17.7 0.0 2 2 4.6e-06 0.00025 13.9 0.0 2 19 164 181 163 255 0.79 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 3_5 - 344 AAA_21 PF13304.1 303 5.7e-25 80.8 17.7 1 1 1.1e-26 5.7e-25 80.8 17.7 1 303 23 278 23 278 0.83 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_19 - 334 Miro PF08477.8 119 0.00033 13.2 0.2 1 1 1.8e-05 0.00096 11.7 0.2 2 22 164 184 163 295 0.79 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 MobB PF03205.9 140 2.4e-05 16.1 0.1 1 2 3.7e-06 0.0002 13.1 0.1 3 34 164 194 162 201 0.80 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 MobB PF03205.9 140 2.4e-05 16.1 0.1 2 2 0.036 1.9 0.2 0.0 74 97 286 311 251 330 0.77 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 2_1 - 1933 Helicase_C PF00271.26 78 2.2e-07 22.8 0.2 1 1 3.4e-08 1.8e-06 19.8 0.1 12 78 1512 1580 1505 1580 0.86 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_3 - 223 ArsA_ATPase PF02374.10 305 4.9e-07 21.0 4.0 1 3 1.5e-07 8e-06 17.0 0.1 9 49 9 48 2 61 0.85 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 ArsA_ATPase PF02374.10 305 4.9e-07 21.0 4.0 2 3 0.002 0.11 3.5 0.1 118 134 72 88 61 91 0.81 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 ArsA_ATPase PF02374.10 305 4.9e-07 21.0 4.0 3 3 0.018 0.95 0.4 0.1 159 201 125 177 100 218 0.47 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 334 T2SE PF00437.15 272 1.5e-68 222.6 0.0 1 1 3.6e-70 1.9e-68 222.3 0.0 8 269 18 313 12 316 0.96 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 Methyltransf_24 PF13578.1 106 3.2e-05 16.8 0.0 1 1 1.1e-06 5.7e-05 16.0 0.0 4 79 11 90 8 105 0.73 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 334 Zeta_toxin PF06414.7 201 2.5e-05 15.4 0.0 1 1 1.1e-06 5.6e-05 14.3 0.0 10 49 155 195 146 221 0.81 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 3_5 - 344 SMC_N PF02463.14 220 5.2e-10 30.9 1.4 1 1 1.5e-11 7.8e-10 30.3 0.3 1 47 1 44 1 54 0.93 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_3 - 223 VirC1 PF07015.6 231 1.5e-09 29.3 0.0 1 1 3.1e-11 1.7e-09 29.1 0.0 3 149 2 145 1 192 0.87 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 Fer4_NifH PF00142.13 273 1.1e-05 16.6 0.1 1 1 4.3e-07 2.3e-05 15.7 0.1 7 43 8 43 2 92 0.79 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 334 AAA_16 PF13191.1 185 0.00011 14.2 0.0 1 1 2.9e-06 0.00015 13.8 0.0 25 82 162 239 137 318 0.71 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 3_5 - 344 AAA_23 PF13476.1 202 4.1e-10 32.3 20.3 1 1 5.5e-11 1.5e-09 30.5 20.3 2 143 5 149 4 329 0.64 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_19 - 334 AAA_23 PF13476.1 202 0.071 5.4 12.3 1 2 0.049 1.3 1.3 1.5 116 175 61 155 6 164 0.47 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 AAA_23 PF13476.1 202 0.071 5.4 12.3 2 2 0.00056 0.015 7.6 6.8 5 37 148 179 143 307 0.92 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 AAA_18 PF13238.1 129 3.3e-06 19.5 0.3 1 2 0.01 0.28 3.5 0.1 23 69 24 73 4 149 0.70 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 AAA_18 PF13238.1 129 3.3e-06 19.5 0.3 2 2 8.2e-06 0.00022 13.6 0.0 1 20 164 189 164 259 0.72 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 AAA_18 PF13238.1 129 0.00012 14.4 3.0 1 2 2.6e-05 0.00069 12.0 1.9 8 94 11 102 10 171 0.68 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 AAA_18 PF13238.1 129 0.00012 14.4 3.0 2 2 0.072 1.9 0.8 0.2 59 88 155 184 113 191 0.58 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 CbiA PF01656.18 195 4.4e-27 86.7 0.4 1 1 1.1e-28 6e-27 86.3 0.4 1 191 3 182 3 186 0.73 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 334 AAA_14 PF13173.1 128 3e-06 19.2 0.3 1 1 2.3e-07 1.2e-05 17.2 0.0 3 57 162 215 160 262 0.74 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 3_5 - 344 AAA_29 PF13555.1 62 1.3e-06 19.9 0.0 1 1 1.1e-07 2.9e-06 18.8 0.0 3 45 4 43 2 53 0.80 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_19 - 334 AAA_29 PF13555.1 62 5.6e-05 14.7 0.0 1 1 4.9e-06 0.00013 13.5 0.0 23 40 161 178 145 189 0.82 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 Sigma54_activat PF00158.21 168 8.2e-05 14.1 0.1 1 1 6e-06 0.00032 12.2 0.0 10 50 149 189 142 201 0.81 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_21 - 599 TraG-D_C PF12696.2 128 1.3e-25 81.8 0.0 1 1 4.5e-27 2.4e-25 80.9 0.0 2 126 405 523 404 525 0.89 # 15398 # 17194 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.292 1_3 - 223 AAA_31 PF13614.1 157 7.3e-11 34.2 0.9 1 3 5e-08 2.6e-06 19.4 0.0 2 40 2 39 1 46 0.88 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 AAA_31 PF13614.1 157 7.3e-11 34.2 0.9 2 3 2.3e-05 0.0012 10.8 0.0 106 152 67 114 58 119 0.83 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 AAA_31 PF13614.1 157 7.3e-11 34.2 0.9 3 3 0.02 1.1 1.2 0.1 15 63 123 166 120 221 0.51 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 2_1 - 1933 Methyltransf_26 PF13659.1 117 8.9e-12 37.1 0.0 1 1 4.1e-13 2.2e-11 35.9 0.0 3 116 306 416 304 417 0.82 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_19 - 334 FtsK_SpoIIIE PF01580.13 205 8.5e-08 23.9 0.0 1 1 6e-09 1.6e-07 23.0 0.0 33 59 155 182 144 185 0.85 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_11 - 925 FtsK_SpoIIIE PF01580.13 205 2e-05 16.1 0.0 1 1 1.4e-06 3.8e-05 15.2 0.0 38 64 547 573 525 578 0.87 # 4688 # 7462 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 2_1 - 1933 MTS PF05175.9 170 2.2e-05 15.9 0.0 1 1 1.4e-06 7.2e-05 14.2 0.0 31 142 303 417 296 437 0.74 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 3_5 - 344 DUF2813 PF11398.3 373 1.1e-10 33.1 0.1 1 2 2e-07 1e-05 16.7 0.0 5 44 4 43 1 60 0.87 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 3_5 - 344 DUF2813 PF11398.3 373 1.1e-10 33.1 0.1 2 2 1.1e-06 5.8e-05 14.2 0.0 286 332 234 283 219 325 0.82 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_19 - 334 ABC_tran PF00005.22 137 1.3e-06 20.8 0.0 1 1 1.6e-07 4.3e-06 19.1 0.0 8 51 158 202 154 243 0.85 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 3_5 - 344 ABC_tran PF00005.22 137 0.0014 11.0 5.1 1 2 6e-05 0.0016 10.8 0.1 12 44 22 54 13 170 0.74 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 3_5 - 344 ABC_tran PF00005.22 137 0.0014 11.0 5.1 2 2 0.037 0.97 1.7 1.4 21 48 214 241 212 327 0.72 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 2_1 - 1933 Eco57I PF07669.6 106 2e-08 26.6 1.9 1 1 2.4e-09 1.3e-07 24.0 0.5 3 104 366 467 364 469 0.81 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_19 - 334 AAA_19 PF13245.1 76 0.00029 12.6 0.0 1 1 1.6e-05 0.00085 11.1 0.0 6 32 157 182 152 199 0.73 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_11 - 925 AAA_10 PF12846.2 304 6.7e-37 119.5 0.3 1 1 4.6e-38 1.2e-36 118.6 0.3 2 296 548 840 547 846 0.88 # 4688 # 7462 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 1_19 - 334 AAA_10 PF12846.2 304 1.8e-05 16.3 0.1 1 1 8.2e-07 2.2e-05 16.0 0.1 3 34 163 194 161 319 0.88 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_22 - 146 AAA_12 PF13087.1 200 0.00029 12.3 0.2 1 1 6.7e-06 0.00036 11.9 0.2 16 102 37 124 26 135 0.74 # 17178 # 17615 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 2_1 - 1933 ResIII PF04851.10 184 9.8e-11 33.8 8.5 1 2 3.7e-12 9.8e-11 33.8 8.5 2 160 994 1189 993 1237 0.64 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 2_1 - 1933 ResIII PF04851.10 184 9.8e-11 33.8 8.5 2 2 0.0028 0.074 4.8 3.8 51 163 1799 1903 1782 1928 0.68 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_19 - 334 ResIII PF04851.10 184 0.0009 11.1 4.6 1 2 0.08 2.1 0.1 0.2 64 133 8 72 3 119 0.61 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 ResIII PF04851.10 184 0.0009 11.1 4.6 2 2 2.2e-05 0.00059 11.7 0.5 23 70 159 208 139 231 0.69 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 DUF2075 PF09848.4 352 6.6e-05 13.9 0.2 1 1 2.5e-06 0.00013 12.9 0.2 11 90 11 87 7 96 0.59 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 Methyltransf_3 PF01596.12 205 0.00011 13.3 0.1 1 1 3.4e-06 0.00018 12.6 0.1 57 129 13 88 10 136 0.82 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 2_1 - 1933 DEAD PF00270.24 169 1.2e-08 26.6 0.9 1 1 2e-08 5.3e-07 21.3 0.2 2 109 998 1106 997 1241 0.73 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 1_19 - 334 DEAD PF00270.24 169 5.9e-05 14.6 0.0 1 1 5.2e-06 0.00014 13.4 0.0 14 70 161 214 148 244 0.75 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_21 - 599 TrwB_AAD_bind PF10412.4 386 8.5e-19 59.3 0.0 1 2 6.4e-07 1.7e-05 15.5 0.0 42 122 149 241 126 262 0.73 # 15398 # 17194 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.292 1_21 - 599 TrwB_AAD_bind PF10412.4 386 8.5e-19 59.3 0.0 2 2 7.3e-15 1.9e-13 41.7 0.0 152 377 307 535 291 540 0.81 # 15398 # 17194 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.292 1_19 - 334 TrwB_AAD_bind PF10412.4 386 2.6e-06 18.2 0.0 1 1 1.8e-07 4.7e-06 17.4 0.0 15 50 161 196 150 211 0.86 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 3_5 - 344 CPT PF07931.7 174 0.00037 12.1 0.0 1 1 1.3e-05 0.00067 11.3 0.0 4 22 24 42 22 60 0.89 # 2092 # 3123 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_19 - 334 Sigma54_activ_2 PF14532.1 138 0.00036 12.6 0.0 1 2 4.5e-05 0.0024 10.0 0.0 8 57 148 197 145 216 0.85 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 Sigma54_activ_2 PF14532.1 138 0.00036 12.6 0.0 2 2 0.076 4 -0.5 0.0 54 89 274 309 238 320 0.76 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_21 - 599 T4SS-DNA_transf PF02534.9 469 2.1e-105 344.9 0.1 1 1 6.5e-107 3.4e-105 344.2 0.1 2 462 92 561 83 567 0.85 # 15398 # 17194 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.292 1_19 - 334 Pox_A32 PF04665.7 241 1.3e-05 16.5 0.0 1 1 4.9e-07 2.6e-05 15.6 0.0 13 44 161 192 149 227 0.79 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 GTP_EFTU PF00009.22 188 3.3e-06 18.6 0.3 1 1 8.7e-08 4.6e-06 18.2 0.3 14 132 12 146 9 209 0.79 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 334 RNA_helicase PF00910.17 107 0.00025 13.3 0.0 1 1 1.4e-05 0.00072 11.8 0.0 1 26 164 189 164 228 0.76 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 UPF0079 PF02367.12 123 8.5e-05 14.2 0.0 1 1 2.9e-06 0.00015 13.4 0.0 8 44 154 190 147 209 0.80 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_28 - 137 tRNA_anti-codon PF01336.20 75 0.00023 13.0 0.0 1 1 8e-06 0.00043 12.2 0.0 29 73 48 101 42 103 0.84 # 22132 # 22542 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.277 1_3 - 223 AAA_24 PF13479.1 213 5.7e-05 14.7 0.1 1 1 4e-06 0.00011 13.9 0.1 12 78 10 90 8 97 0.81 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_19 - 334 AAA_24 PF13479.1 213 0.00026 12.6 0.1 1 2 0.00011 0.0029 9.2 0.0 5 24 163 183 160 204 0.83 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 AAA_24 PF13479.1 213 0.00026 12.6 0.1 2 2 0.038 1 0.9 0.0 156 183 292 321 269 331 0.64 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_19 - 334 NACHT PF05729.7 166 4.6e-05 15.1 0.1 1 1 2.1e-06 0.00011 13.9 0.1 3 24 164 185 162 191 0.86 # 13836 # 14837 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 1_3 - 223 AAA_25 PF13481.1 194 1.2e-05 16.7 0.8 1 2 4.3e-06 0.00023 12.6 0.2 42 74 10 42 9 91 0.67 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 1_3 - 223 AAA_25 PF13481.1 194 1.2e-05 16.7 0.8 2 2 0.022 1.1 0.5 0.0 114 143 140 169 119 177 0.75 # 1136 # 1804 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.260 2_1 - 1933 SNF2_N PF00176.18 299 1.9e-22 71.4 0.3 1 1 2e-23 1.1e-21 68.9 0.3 21 205 1006 1270 948 1335 0.77 # 2 # 5800 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.277 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/60c8a4c2-8a76-404a-8bc4-4deb153b9dc7 # Target file: checkm_output/bins/pNZ_CP007767.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CP007767.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/60c8a4c2-8a76-404a-8bc4-4deb153b9dc7 checkm_output/bins/pNZ_CP007767.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:25 2020 # [ok]