# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 247 ATP_bind_3 PF01171.15 182 5.2e-05 13.4 0.0 1 1 4.1e-06 8.2e-05 12.8 0.0 2 90 26 118 25 134 0.64 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_12 - 463 TIGR00392 TIGR00392 861 3.8e-09 25.5 1.4 1 2 0.0064 0.13 0.5 0.0 45 78 26 59 7 158 0.75 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 TIGR00392 TIGR00392 861 3.8e-09 25.5 1.4 2 2 1.1e-09 2.2e-08 22.9 0.6 601 682 247 325 241 389 0.80 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 581 AAA_22 PF13401.1 131 3.6e-06 17.8 0.9 1 1 2.4e-06 4.8e-05 14.2 0.9 4 127 366 533 362 536 0.57 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_11 - 581 SRP54 PF00448.17 196 0.00012 12.2 0.6 1 2 5.2e-05 0.001 9.1 0.1 3 39 368 404 366 425 0.92 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_11 - 581 SRP54 PF00448.17 196 0.00012 12.2 0.6 2 2 0.016 0.32 1.0 0.1 73 122 482 530 452 543 0.76 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_11 - 581 AAA_21 PF13304.1 303 1.6e-09 28.7 3.7 1 1 4.3e-09 8.6e-08 23.0 1.3 3 289 370 523 368 536 0.65 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_3 - 309 LpxK PF02606.9 326 7.4e-55 176.7 0.0 1 2 1e-41 2.1e-40 129.2 0.0 2 187 26 203 25 214 0.93 # 2245 # 3171 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.279 1_3 - 309 LpxK PF02606.9 326 7.4e-55 176.7 0.0 2 2 3.4e-16 6.8e-15 45.4 0.6 228 325 215 303 206 304 0.89 # 2245 # 3171 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.279 1_4 - 247 NAD_synthase PF02540.12 242 2.4e-82 266.1 0.1 1 1 1.3e-83 2.7e-82 265.9 0.1 2 242 7 241 6 241 0.96 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_11 - 581 SMC_N PF02463.14 220 7.2e-13 38.9 5.7 1 1 8.7e-13 1.7e-11 34.3 5.7 23 211 365 545 349 550 0.72 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_4 - 247 TIGR02432 TIGR02432 189 0.00011 12.4 0.0 1 1 9.6e-06 0.00019 11.7 0.0 2 67 26 86 25 130 0.68 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_4 - 247 QueC PF06508.8 210 2.7e-07 20.7 0.0 1 2 5.5e-08 1.1e-06 18.7 0.0 3 64 27 88 25 110 0.83 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_4 - 247 QueC PF06508.8 210 2.7e-07 20.7 0.0 2 2 0.056 1.1 -0.9 0.0 157 176 153 172 148 179 0.86 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_11 - 581 AAA_16 PF13191.1 185 8.4e-06 16.5 0.0 1 1 9.4e-07 1.9e-05 15.4 0.0 24 185 366 528 358 529 0.61 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_7 - 260 adh_short PF00106.20 167 7.2e-21 65.4 0.0 1 1 5.6e-22 1.1e-20 64.8 0.0 1 166 8 182 8 183 0.88 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_15 - 184 Ribosomal_S13 PF00416.17 107 1.5e-08 25.8 0.1 1 2 8.7e-07 1.7e-05 15.9 0.0 9 50 67 108 62 110 0.89 # 15461 # 16012 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.332 1_15 - 184 Ribosomal_S13 PF00416.17 107 1.5e-08 25.8 0.1 2 2 0.00019 0.0038 8.4 0.0 16 58 109 150 107 181 0.85 # 15461 # 16012 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.332 1_12 - 463 tRNA-synt_1d PF00750.14 354 2.9e-06 16.9 0.3 1 3 4.6e-06 9.3e-05 11.9 0.0 14 60 11 57 2 68 0.86 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1d PF00750.14 354 2.9e-06 16.9 0.3 2 3 0.0083 0.17 1.2 0.0 147 196 84 136 58 147 0.72 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1d PF00750.14 354 2.9e-06 16.9 0.3 3 3 0.038 0.75 -0.9 0.1 80 123 340 383 334 391 0.80 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1 PF00133.17 601 1e-09 27.5 0.0 1 2 7.3e-05 0.0015 7.1 0.0 19 66 13 60 6 178 0.85 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1 PF00133.17 601 1e-09 27.5 0.0 2 2 6.1e-08 1.2e-06 17.3 0.0 550 597 245 291 225 295 0.84 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1g PF09334.6 391 1.3e-16 50.8 1.8 1 3 1.5e-08 3.1e-07 19.9 0.0 12 131 30 149 22 175 0.85 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1g PF09334.6 391 1.3e-16 50.8 1.8 2 3 2.6e-11 5.3e-10 29.0 0.0 316 372 245 300 223 308 0.83 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1g PF09334.6 391 1.3e-16 50.8 1.8 3 3 0.038 0.75 -1.1 0.1 189 226 351 389 333 449 0.78 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_15 - 184 TIGR00084 TIGR00084 192 2.4e-44 141.4 2.4 1 1 1.3e-45 2.7e-44 141.3 2.4 1 190 1 182 1 183 0.95 # 15461 # 16012 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.332 1_11 - 581 AAA_29 PF13555.1 62 3.4e-05 14.0 0.4 1 1 4.2e-06 8.5e-05 12.8 0.1 15 40 359 383 354 394 0.83 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_3 - 309 AAA PF00004.24 132 5.7e-05 14.0 0.2 1 1 8.9e-06 0.00018 12.4 0.1 8 66 66 154 64 163 0.79 # 2245 # 3171 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.279 1_7 - 260 KR PF08659.5 181 9.5e-07 19.3 0.0 1 2 3.4e-07 6.7e-06 16.5 0.0 2 97 9 102 8 182 0.68 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_7 - 260 KR PF08659.5 181 9.5e-07 19.3 0.0 2 2 0.014 0.28 1.4 0.1 32 71 150 205 126 219 0.57 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_11 - 581 MMR_HSR1 PF01926.18 116 4.4e-05 14.1 1.7 1 1 1.2e-05 0.00024 11.7 1.6 2 60 369 467 368 555 0.47 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_11 - 581 DUF258 PF03193.11 161 2.1e-07 20.9 0.1 1 1 1.8e-08 3.5e-07 20.2 0.1 9 66 337 397 330 411 0.71 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_4 - 247 Asn_synthase PF00733.16 255 1.1e-06 18.9 0.0 1 1 7.7e-08 1.5e-06 18.4 0.0 9 81 17 85 9 114 0.66 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_11 - 581 AAA_30 PF13604.1 196 8.5e-05 12.8 0.4 1 1 5.7e-05 0.0011 9.1 0.4 19 127 367 528 363 541 0.65 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_15 - 184 RuvA_N PF01330.16 61 5.5e-20 61.7 1.9 1 1 3e-21 6.1e-20 61.5 0.6 1 61 1 62 1 62 0.99 # 15461 # 16012 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.332 1_12 - 463 tRNA-synt_1f PF01921.13 360 1.5e-06 17.7 2.2 1 2 0.0016 0.032 3.4 0.0 11 77 7 74 2 173 0.80 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 463 tRNA-synt_1f PF01921.13 360 1.5e-06 17.7 2.2 2 2 1.1e-06 2.2e-05 13.8 0.1 275 340 250 316 245 343 0.82 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_11 - 581 ABC_tran PF00005.22 137 5.5e-34 108.1 0.1 1 1 5.1e-35 1e-33 107.2 0.1 1 137 356 503 356 503 0.83 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_12 - 463 tRNA-synt_1e PF01406.14 301 1.1e-112 366.5 0.7 1 1 9.4e-114 1.9e-112 365.8 0.7 4 301 13 304 10 304 0.96 # 10683 # 12071 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_7 - 260 NAD_binding_10 PF13460.1 183 9.3e-05 13.1 0.0 1 1 1.7e-05 0.00035 11.2 0.0 2 101 11 156 10 235 0.71 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_11 - 581 AAA_10 PF12846.2 304 2.3e-05 14.5 0.8 1 2 2.8e-05 0.00057 9.9 0.1 4 33 369 398 366 406 0.87 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_11 - 581 AAA_10 PF12846.2 304 2.3e-05 14.5 0.8 2 2 0.0045 0.091 2.7 0.0 145 205 477 533 426 553 0.62 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_7 - 260 adh_short_C2 PF13561.1 241 1.6e-46 149.6 0.3 1 1 9.4e-48 1.9e-46 149.4 0.3 6 240 17 256 14 257 0.94 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_11 - 581 SbcCD_C PF13558.1 90 1.2e-06 19.1 0.1 1 1 2.8e-07 5.5e-06 17.0 0.1 19 89 461 518 447 519 0.76 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_7 - 260 RRM_3 PF08777.6 105 1e-05 16.0 0.2 1 2 2.7e-05 0.00053 10.5 0.1 40 92 32 83 23 87 0.90 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_7 - 260 RRM_3 PF08777.6 105 1e-05 16.0 0.2 2 2 0.0048 0.096 3.3 0.0 49 96 166 212 150 218 0.72 # 4943 # 5722 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.353 1_15 - 184 TIGR00615 TIGR00615 196 3.2e-06 17.0 0.1 1 2 0.039 0.77 -0.5 0.0 8 28 69 89 64 107 0.80 # 15461 # 16012 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.332 1_15 - 184 TIGR00615 TIGR00615 196 3.2e-06 17.0 0.1 2 2 9.8e-07 2e-05 14.4 0.0 13 38 109 134 96 151 0.83 # 15461 # 16012 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.332 1_4 - 247 tRNA_Me_trans PF03054.11 356 6.1e-09 25.4 0.0 1 2 1.5e-08 3.1e-07 19.8 0.0 3 71 26 86 24 99 0.81 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_4 - 247 tRNA_Me_trans PF03054.11 356 6.1e-09 25.4 0.0 2 2 0.0014 0.028 3.5 0.0 162 193 148 181 140 185 0.80 # 3175 # 3915 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_11 - 581 PPV_E1_C PF00519.12 432 9.3e-05 11.7 0.0 1 1 9.7e-06 0.00019 10.7 0.0 240 330 341 433 325 440 0.76 # 8948 # 10690 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6d4719c0-ce5a-4c5f-bef2-e4eb2d907871 # Target file: checkm_output/bins/pNZ_CM007885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_CM007885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6d4719c0-ce5a-4c5f-bef2-e4eb2d907871 checkm_output/bins/pNZ_CM007885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:18 2020 # [ok]