# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 1871 Helicase_C PF00271.26 78 3.6e-08 23.4 0.3 1 2 0.053 0.74 -0.0 0.0 14 40 1017 1043 1003 1045 0.84 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 Helicase_C PF00271.26 78 3.6e-08 23.4 0.3 2 2 4e-08 5.6e-07 19.6 0.0 12 78 1454 1522 1447 1522 0.86 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_6 - 187 CbiA PF01656.18 195 1.4e-08 24.4 0.1 1 2 1.2e-06 1.7e-05 14.4 0.0 1 24 3 26 3 30 0.92 # 2438 # 2998 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.244 1_6 - 187 CbiA PF01656.18 195 1.4e-08 24.4 0.1 2 2 8.4e-05 0.0012 8.4 0.0 95 180 54 133 29 150 0.69 # 2438 # 2998 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.244 1_8 - 1871 Methyltransf_26 PF13659.1 117 7.3e-14 42.0 0.0 1 1 1.6e-14 2.3e-13 40.4 0.0 3 116 250 360 248 361 0.84 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 MTS PF05175.9 170 6.5e-06 15.7 0.0 1 1 1.3e-06 1.9e-05 14.2 0.0 32 142 248 361 240 381 0.75 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_14 - 90 Dynamin_N PF00350.18 168 0.00011 12.1 0.0 1 1 9.5e-06 0.00013 11.9 0.0 11 47 15 50 12 74 0.79 # 13549 # 13818 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.367 1_8 - 1871 Eco57I PF07669.6 106 9.1e-09 25.9 0.3 1 1 6.5e-10 9.1e-09 25.9 0.3 3 104 310 411 308 413 0.84 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 ResIII PF04851.10 184 6.1e-11 32.6 9.9 1 2 4.4e-12 6.1e-11 32.6 9.9 2 161 938 1134 937 1181 0.61 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 ResIII PF04851.10 184 6.1e-11 32.6 9.9 2 2 0.088 1.2 -1.0 2.1 69 164 1782 1849 1732 1867 0.46 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 DEAD PF00270.24 169 4.3e-09 26.2 0.8 1 2 3.2e-08 4.4e-07 19.6 0.2 2 107 942 1048 941 1183 0.80 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 DEAD PF00270.24 169 4.3e-09 26.2 0.8 2 2 0.034 0.48 0.0 0.0 120 148 1824 1857 1783 1864 0.70 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 SNF2_N PF00176.18 299 1.3e-21 66.7 4.9 1 3 1.7e-22 2.4e-21 65.9 0.4 24 204 953 1213 893 1274 0.76 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 SNF2_N PF00176.18 299 1.3e-21 66.7 4.9 2 3 0.01 0.15 0.9 0.1 194 286 1400 1496 1382 1505 0.73 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 1_8 - 1871 SNF2_N PF00176.18 299 1.3e-21 66.7 4.9 3 3 0.061 0.85 -1.6 0.0 123 151 1811 1840 1775 1859 0.75 # 3500 # 9112 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.297 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ff7a094e-a9ff-463c-8353-738c985a20fc # Target file: checkm_output/bins/pNZ_AAFL01000022.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_AAFL01000022.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ff7a094e-a9ff-463c-8353-738c985a20fc checkm_output/bins/pNZ_AAFL01000022.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:04 2020 # [ok]