# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 182 IstB_IS21 PF01695.12 178 5.3e-05 13.8 0.2 1 1 3.9e-06 0.00011 12.8 0.0 45 70 2 27 1 48 0.84 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 NB-ARC PF00931.17 287 1.2e-05 15.4 0.0 1 1 7.4e-07 2.2e-05 14.6 0.0 20 47 5 32 1 46 0.86 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_22 PF13401.1 131 5.4e-08 24.2 0.2 1 2 8.8e-09 2.6e-07 22.0 0.1 3 33 3 33 1 85 0.83 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_22 PF13401.1 131 5.4e-08 24.2 0.2 2 2 0.049 1.4 0.2 0.0 60 82 121 143 91 180 0.63 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 SRP54 PF00448.17 196 3.1e-05 14.6 0.1 1 1 1.9e-06 5.4e-05 13.8 0.1 3 40 6 42 4 50 0.82 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_3 PF07726.6 131 0.0002 12.2 0.1 1 1 2e-05 0.00057 10.7 0.0 2 29 7 34 6 43 0.82 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_17 PF13207.1 121 2.4e-14 45.4 0.0 1 1 9.6e-16 2.8e-14 45.2 0.0 1 115 6 129 6 164 0.69 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 Miro PF08477.8 119 2.9e-05 15.8 0.3 1 1 3.9e-06 0.00011 13.9 0.0 2 33 7 38 6 53 0.83 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 MobB PF03205.9 140 0.00019 12.3 0.1 1 1 1.4e-05 0.00041 11.2 0.1 2 29 6 30 5 41 0.76 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 PhoH PF02562.11 205 0.00012 12.5 0.1 1 1 7.6e-06 0.00022 11.6 0.1 18 46 3 31 1 36 0.81 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 T2SE PF00437.15 272 2.4e-05 14.5 0.1 1 1 1.4e-06 4.1e-05 13.7 0.1 129 152 5 28 1 42 0.84 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 Cytidylate_kin2 PF13189.1 179 2.2e-06 18.9 0.9 1 2 0.00019 0.0054 7.8 0.1 1 24 6 29 6 33 0.92 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 Cytidylate_kin2 PF13189.1 179 2.2e-06 18.9 0.9 2 2 3.8e-05 0.0011 10.0 0.1 88 147 71 138 30 162 0.72 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 Zeta_toxin PF06414.7 201 1.9e-11 34.5 0.1 1 1 1.4e-12 4e-11 33.5 0.1 17 147 5 130 2 176 0.78 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_16 PF13191.1 185 1e-06 20.0 0.0 1 1 6.1e-08 1.8e-06 19.2 0.0 23 63 3 44 2 88 0.80 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_23 PF13476.1 202 0.00036 12.0 1.1 1 2 3.4e-05 0.00098 10.6 0.6 21 38 6 23 2 25 0.88 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_23 PF13476.1 202 0.00036 12.0 1.1 2 2 0.067 1.9 -0.2 0.0 95 95 127 127 36 176 0.60 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_18 PF13238.1 129 5.4e-17 53.5 0.0 1 1 2.5e-18 7.4e-17 53.1 0.0 1 123 7 135 7 143 0.73 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 CbiA PF01656.18 195 0.00096 9.7 4.0 1 1 0.00027 0.008 6.7 4.0 1 63 6 101 6 172 0.53 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 KaiC PF06745.8 227 1.1e-05 15.8 0.4 1 2 8.9e-07 2.6e-05 14.6 0.0 18 38 3 23 1 40 0.86 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 KaiC PF06745.8 227 1.1e-05 15.8 0.4 2 2 0.066 1.9 -1.4 0.1 96 124 121 158 99 175 0.49 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_14 PF13173.1 128 2.1e-08 25.3 0.0 1 1 1e-09 3e-08 24.8 0.0 2 120 4 137 3 145 0.70 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 GvpD PF07088.6 484 0.00013 11.4 0.3 1 2 1.9e-05 0.00056 9.4 0.0 9 26 3 20 1 39 0.88 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 GvpD PF07088.6 484 0.00013 11.4 0.3 2 2 0.013 0.37 0.1 0.0 35 377 101 134 93 171 0.65 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA PF00004.24 132 9.1e-09 26.8 0.0 1 2 3.4e-09 9.8e-08 23.5 0.0 2 25 8 31 7 84 0.80 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA PF00004.24 132 9.1e-09 26.8 0.0 2 2 0.024 0.7 1.3 0.0 104 131 108 135 92 136 0.83 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 Sigma54_activat PF00158.21 168 0.00011 12.8 0.0 1 1 6.9e-06 0.0002 12.0 0.0 25 51 7 33 1 89 0.73 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 NTPase_1 PF03266.10 168 1.7e-05 15.8 0.2 1 1 1.4e-06 4e-05 14.5 0.2 2 22 7 27 6 37 0.87 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_33 PF13671.1 143 5.2e-15 46.7 0.0 1 1 2.4e-16 7e-15 46.3 0.0 2 129 7 137 6 146 0.84 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 KTI12 PF08433.5 270 1e-06 19.2 0.0 1 2 8.3e-08 2.4e-06 18.0 0.0 3 43 6 45 5 87 0.74 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 KTI12 PF08433.5 270 1e-06 19.2 0.0 2 2 0.084 2.4 -1.7 0.0 250 268 126 144 102 173 0.61 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_30 PF13604.1 196 5.8e-06 17.1 0.1 1 1 3.8e-07 1.1e-05 16.2 0.1 17 40 3 26 1 37 0.86 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 ABC_tran PF00005.22 137 4.7e-06 18.1 0.1 1 1 2e-07 5.8e-06 17.8 0.0 9 50 2 42 1 142 0.85 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 TIGR03263 TIGR03263 180 1.3e-05 15.8 0.1 1 2 2.3e-06 6.7e-05 13.4 0.0 1 36 4 38 4 77 0.84 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 TIGR03263 TIGR03263 180 1.3e-05 15.8 0.1 2 2 0.025 0.72 0.3 0.1 110 142 103 135 96 172 0.67 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 ATP-synt_ab PF00006.20 215 9.2e-05 13.1 0.0 1 1 4e-06 0.00012 12.8 0.0 14 45 3 34 1 179 0.76 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 RuvB_N PF05496.7 234 7.1e-05 13.1 0.2 1 1 5.9e-06 0.00017 11.8 0.0 53 76 7 30 3 40 0.85 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_19 PF13245.1 76 1.9e-08 25.2 0.2 1 1 1.6e-09 4.7e-08 24.0 0.2 10 31 4 25 1 32 0.85 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 Viral_helicase1 PF01443.13 234 2.8e-05 14.9 0.0 1 1 1.6e-06 4.5e-05 14.2 0.0 1 60 7 75 7 88 0.65 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 DUF2075 PF09848.4 352 1e-06 19.0 0.0 1 1 5.1e-08 1.5e-06 18.5 0.0 2 26 5 31 4 84 0.84 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 TIP49 PF06068.8 398 9.7e-06 15.6 0.1 1 2 1e-06 3e-05 14.0 0.0 50 75 4 29 2 45 0.82 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 TIP49 PF06068.8 398 9.7e-06 15.6 0.1 2 2 0.043 1.2 -1.3 0.1 149 178 127 156 106 172 0.73 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_11 PF13086.1 236 1.3e-05 16.0 0.3 1 1 7.4e-07 2.1e-05 15.3 0.3 17 41 4 28 1 177 0.73 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 CPT PF07931.7 174 8.3e-13 39.5 0.0 1 1 5.6e-14 1.6e-12 38.5 0.0 1 172 4 172 4 174 0.82 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 2_3 - 107 Ribosomal_S2 PF00318.15 211 5.9e-05 13.5 3.3 1 1 2.7e-06 7.8e-05 13.1 3.3 106 158 25 93 2 100 0.79 # 213 # 533 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.268 1_4 - 182 ArgK PF03308.11 267 0.00021 11.2 0.1 1 1 1.3e-05 0.00039 10.4 0.1 30 52 5 27 2 34 0.86 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 RNA_helicase PF00910.17 107 9e-05 13.9 0.0 1 1 5.3e-06 0.00015 13.1 0.0 1 35 7 42 7 77 0.71 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_24 PF13479.1 213 6.4e-05 13.7 0.1 1 1 4.6e-06 0.00013 12.7 0.0 5 23 6 24 2 44 0.84 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 NACHT PF05729.7 166 9.3e-05 13.3 0.0 1 1 6.6e-06 0.00019 12.3 0.0 1 29 5 33 5 64 0.75 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_25 PF13481.1 194 1e-05 16.2 0.5 1 2 9.6e-07 2.8e-05 14.7 0.3 32 54 3 25 1 38 0.88 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_25 PF13481.1 194 1e-05 16.2 0.5 2 2 0.08 2.3 -1.3 0.0 120 176 56 76 27 87 0.48 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_28 PF13521.1 163 6.5e-09 27.1 0.1 1 2 7.4e-10 2.1e-08 25.4 0.0 2 65 7 74 6 86 0.69 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 AAA_28 PF13521.1 163 6.5e-09 27.1 0.1 2 2 0.092 2.7 -0.9 0.1 73 89 145 161 96 178 0.55 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 APS_kinase PF01583.15 157 4e-06 17.7 0.0 1 2 2.7e-06 7.8e-05 13.5 0.0 1 84 3 90 3 114 0.65 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_4 - 182 APS_kinase PF01583.15 157 4e-06 17.7 0.0 2 2 0.007 0.2 2.4 0.0 44 74 118 148 97 155 0.85 # 2289 # 2834 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.396 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6c9619e8-2997-486c-9500-847c5e6cc32d # Target file: checkm_output/bins/pNZ_AAFL01000021.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pNZ_AAFL01000021.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6c9619e8-2997-486c-9500-847c5e6cc32d checkm_output/bins/pNZ_AAFL01000021.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:51:04 2020 # [ok]